LOCUS       XM_039091663            1677 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus abraxas 1, BRCA1 A complex subunit
            (Abraxas1), transcript variant X1, mRNA.
ACCESSION   XM_039091663
VERSION     XM_039091663.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051349.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1677
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="14"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1677
                     /gene="Abraxas1"
                     /gene_synonym="Ccdc98; Fam175a; RGD1305287"
                     /note="abraxas 1, BRCA1 A complex subunit; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 3 ESTs, 1 Protein, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 18 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:289468"
                     /db_xref="RGD:1305287"
     CDS             597..1487
                     /gene="Abraxas1"
                     /gene_synonym="Ccdc98; Fam175a; RGD1305287"
                     /codon_start=1
                     /product="BRCA1-A complex subunit Abraxas 1 isoform X1"
                     /protein_id="XP_038947591.1"
                     /db_xref="GeneID:289468"
                     /db_xref="RGD:1305287"
                     /translation="MTFREQLLHRNLQTHLSSPELVFLLLTPSITTESCCTHCLEHGL
                     YKPQSGLFHKVPLVVTNLGMSDQLGYKTESVSCTSTVFSRAVRTYSSQFFNEDGSLKE
                     VRKINEMYAAIQEELKTICQKVEQSEREVEKLLMDVNRLKEVRKKQQAQAKGAGEKSQ
                     NHPQENILLCQALRTFFPESQVLHSCVISLKNRHISHSGCNTDHHLDVVDKLTLMVEY
                     VYSPEASPAPAAPLSKRKALDTQDQWPAKRPRLLESESRPGPAFRGSHQDKASSSSLD
                     IDTEVGSPEDDTDYPRSPTF"
ORIGIN      
        1 acattcagaa atatattcca tgctaccggc tttttagctt ttataattct ttaggtgaag
       61 taaatgaaca cgcactgaag aaaattcttt caaatgtcaa aaaggaatcc cgagaaatgc
      121 cgatgctgtt actgctcata gtagggagtc gctcccgaaa ccatactcag gtctgtgtga
      181 gcactcagtt tgttaaatgt taaagtatgt acgctaagat aacttgaaaa gctttgtaat
      241 tgggtctgtt tctgatttat ataactgaag ctttaccaac agttagaaaa gccattttaa
      301 gacaggtggg gtttgatgcc tttgatccca gcactaggga agcagaggca ggtggatgtg
      361 agcttgaggc cagcctggtc tacagatgaa gttccaggac agccaggact acagagaaag
      421 gcactggcac acgtttttgt ttagtcttgt tgtgtcccca ggctacacca cggtgttctg
      481 gagccactgg gtcactgggt acacggcagc tactgcttca agaccattaa tttttcctgt
      541 attctcttca gactgtggtg ggttggtata aattccgtcg tcactcggat cagataatga
      601 catttagaga gcagttgctc cacagaaact tacagacgca tctttcaagc ccagagcttg
      661 tttttctgtt gttaacacca agtataacaa cagagagctg ctgcactcac tgcctggaac
      721 acggcctgta caaacctcaa agtgggcttt ttcataaggt acctttggtg gttaccaatc
      781 tgggaatgtc tgatcaactg ggttataaaa cagagtctgt ttcctgtacg tccactgtct
      841 ttagcagagc tgtgaggaca tacagttctc aattttttaa tgaagatgga tcattaaagg
      901 aagtacgtaa gataaatgaa atgtatgctg ctatacaaga agaattaaag actatatgcc
      961 aaaaagttga acaaagtgaa cgagaagtag agaaactatt gatggatgta aaccgattaa
     1021 aagaagttag aaaaaaacag caagcacagg ctaaaggagc aggagagaag agccaaaacc
     1081 atccccagga gaacattctc ctctgccaag ctttacgaac attctttcca gagtctcaag
     1141 ttcttcactc ttgcgttatt tctttgaaaa atagacatat ttctcacagt gggtgtaaca
     1201 ctgaccacca tcttgatgtg gtggataagc taaccttaat ggtggagtac gtttacagcc
     1261 ctgaagctag tccagcacct gcagccccac tgagcaaacg taaagctcta gacacacaag
     1321 atcagtggcc tgcgaagaga ccacggctgc tagagtcaga aagcagacct gggccagcat
     1381 ttcgaggcag tcaccaggac aaagcctcct caagcagcct cgatatagac acagaggtgg
     1441 ggagcccgga agatgatact gactaccctc gctctcccac attttgattc tttgtagagg
     1501 acatttttta ctagactgga gtttagggca cttattttta ctctttgctt cctggagtaa
     1561 tagagttcat gcttttactc tattcagctg tttgtaatac atggatattt ttactgttca
     1621 actgcttata atatataggt aagttaatat tttataaagt atcttaaaaa ttcttta
//
