LOCUS       NM_001399504            4055 bp    mRNA    linear   ROD 29-MAR-2024
DEFINITION  Rattus norvegicus actin binding transcription modulator (Abitram),
            mRNA.
ACCESSION   NM_001399504 XM_002729478
VERSION     NM_001399504.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4055)
  AUTHORS   Derlig,K., Giessl,A., Brandstatter,J.H., Enz,R. and Dahlhaus,R.
  TITLE     Special characteristics of the transcription and splicing machinery
            in photoreceptor cells of the mammalian retina
  JOURNAL   Cell Tissue Res 362 (2), 281-294 (2015)
   PUBMED   26013685
REFERENCE   2  (bases 1 to 4055)
  AUTHORS   Derlig,K., Ehrhardt,T., Giessl,A., Brandstatter,J.H., Enz,R. and
            Dahlhaus,R.
  TITLE     Simiate is an Actin binding protein involved in filopodia dynamics
            and arborization of neurons
  JOURNAL   Front Cell Neurosci 8, 99 (2014)
   PUBMED   24782708
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 4055)
  AUTHORS   Derlig,K., Giessl,A., Brandstatter,J.H., Enz,R. and Dahlhaus,R.
  TITLE     Identification and characterisation of Simiate, a novel protein
            linked to the fragile X syndrome
  JOURNAL   PLoS One 8 (12), e83007 (2013)
   PUBMED   24349419
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000005.1.
            
            On Jan 10, 2022 this sequence version replaced XM_002729478.6.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643299.22899.1,
                                           SRR26643297.19044.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-333               JAXUCZ010000005.1  76301054-76301386
            334-385             JAXUCZ010000005.1  76302343-76302394
            386-515             JAXUCZ010000005.1  76302877-76303006
            516-592             JAXUCZ010000005.1  76304396-76304472
            593-662             JAXUCZ010000005.1  76304593-76304662
            663-4055            JAXUCZ010000005.1  76304748-76308140
FEATURES             Location/Qualifiers
     source          1..4055
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q24"
     gene            1..4055
                     /gene="Abitram"
                     /gene_synonym="Fam206a"
                     /note="actin binding transcription modulator"
                     /db_xref="GeneID:298018"
                     /db_xref="RGD:1594560"
     exon            1..333
                     /gene="Abitram"
                     /gene_synonym="Fam206a"
                     /inference="alignment:Splign:2.1.0"
     CDS             219..800
                     /gene="Abitram"
                     /gene_synonym="Fam206a"
                     /note="family with sequence similarity 206, member A"
                     /codon_start=1
                     /product="protein Abitram"
                     /protein_id="NP_001386433.1"
                     /db_xref="GeneID:298018"
                     /db_xref="RGD:1594560"
                     /translation="MEELPCPEAGVVAPEVVMSTEPPAPSLVDRYFTRWYKADVKGKP
                     CEDHCILQHSNRICVITLAGSHPVLQSGKTIKSISYQISNNCSRLQNKVSGKFKRGAQ
                     FLTELAPLCKIYCSDGEEYTISSCIRGRLMEVNENILHQPSLLQEKPSTEGYIAVVLP
                     KFEESKSITEGLLTQQQYEEVLVKRTDATTVTS"
     exon            334..385
                     /gene="Abitram"
                     /gene_synonym="Fam206a"
                     /inference="alignment:Splign:2.1.0"
     exon            386..515
                     /gene="Abitram"
                     /gene_synonym="Fam206a"
                     /inference="alignment:Splign:2.1.0"
     exon            516..592
                     /gene="Abitram"
                     /gene_synonym="Fam206a"
                     /inference="alignment:Splign:2.1.0"
     exon            593..662
                     /gene="Abitram"
                     /gene_synonym="Fam206a"
                     /inference="alignment:Splign:2.1.0"
     exon            663..4055
                     /gene="Abitram"
                     /gene_synonym="Fam206a"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gtagatccga ggtcctagcc tggtagagac agaaggactt tgctgtctgt tgtccctcag
       61 ccctttgacg cccagttgta tttgcccaac agttggactt tggcccagca gcgcaagtga
      121 ctggggttgg gaaggaggtc ggctgcgggc cggggagtcg cgggcgcgcg cgtgcacaac
      181 gttaccacgc gccggaagta ctctcctgga ccagcgggat ggaagagctc ccctgccccg
      241 aagccggggt ggtggcgcca gaggtagtca tgtctaccga acccccagca ccctcccttg
      301 tagatcgata cttcactcgc tggtataaag cggatgttaa aggaaaaccc tgtgaggacc
      361 actgtatact ccagcactcc aaccgaatat gcgtcatcac actggcagga tctcatcccg
      421 ttcttcaaag tggcaaaact attaaaagta tttcctatca gatcagtaac aattgtagca
      481 gacttcagaa caaagtatct gggaaattta aacggggggc acagtttcta acagagcttg
      541 cacctctgtg taagatttac tgctctgatg gagaagaata taccatatct agctgtatta
      601 gaggtcgatt aatggaagtg aatgaaaaca ttcttcatca gccatctctt cttcaggaaa
      661 agccgtccac cgaaggctac attgcagttg tgttacccaa atttgaggaa agtaaaagca
      721 taacagaagg gttactgaca cagcagcagt atgaagaggt cctggtaaaa cgcactgatg
      781 ccaccacagt cacgtcctga gccctgcaat aggggcagca caggattgtc accctactat
      841 cggtgccctg aagacagcca gtgtgtatga agcgtccctc acagccgcca gccgtggaag
      901 gagcctaagc cttcacctaa tttccctcat ttgtctcaac atcacaagcg ttggtcccat
      961 ttgtattcag gctctcagat ctgctttgtc caggtacttg ctttgtgtgc tgggaagtgc
     1021 acttgtgggt attcacttgc gtatgtgtca gaaaacaact tcaagggctc ttttaccttt
     1081 gttaagggct ttggaagttt gccagatagc tcgcgtcctc tgcctcctcg tgtcctctgc
     1141 ctcccatctt acagggctgg tattacaagt acacaccacc ataccagctt tatatgggcc
     1201 tggaaaccca aactctgggc ttcgtgcttt caaggtgtat tagttactgt tcagttgctg
     1261 tcataaaata ccaaactaaa agcttatagt ccagaggact agatgaccac aatagtggga
     1321 aggcacagta gccagagcag gaagctaaga ggtcacatct ctaccacaca ccaagagcag
     1381 agtgaactgg acggagaatg tagttataaa atgcccctgg tgctacaatc cctcagcaag
     1441 actttgcgtc ctaaaagttc cataagctcc ccaaacagta ccaccaactg gggaccaagt
     1501 gctcaaatac ctaagtctat gggcatcatt tttcattcaa tctacaacat tcttcccatg
     1561 atgcctgtag gcccatagtc agctcataca aaacgtagtt agtccaatat caaaagttcc
     1621 cacagtcgtt aacactctca gtgctgctcc agattctctt ctgagactca atgcaagcct
     1681 ttgtctcccc tgtaaatcaa aaagccaatt acatacttcc aacatacgat ggcacagaac
     1741 atagattccc attccaaaag gaagggatga tggcattgta aggaaatatt ggaccaaagg
     1801 ccaaaaccag catggtgaac gccaaaccct gctgctctat ccccactgtg taagggttta
     1861 gtttctgaga cgactctgac ccagcagcac tgagcctgta acagatcatt ctctggatgg
     1921 ctccactctg cagctcatcc cgggcagaca tccagctttg tatcccagtg tcttggggtt
     1981 tgtgccataa cccaagcttt accttcacag cttgacagtg gcttcccatg gcctcttgaa
     2041 gaaaccccaa atctgccaca tggttcccag catcagtgac tttctgaagc cagaagaatc
     2101 cagacttttc attcttgcat cttttatgcc tacaaagcta gtaccatgtg gaaaatgttt
     2161 gaaaattaga ctgtcagctt tcagtgcctt tgatcacatc cacagtagct cttgtgttgc
     2221 tttctgcaag caaacagcca ggttctggtg ctgtccctca tagagcgggg gtttatctga
     2281 aaggattctt gccttgacta acttccattg tcccagtgtg gagcaggaga cttctttttt
     2341 aactctgagt ttcacatcat caccccagtc ccttatctcc ctgacccctc atatcagccc
     2401 tccacacttg gcaacctcaa taaaagacac acacacacac acacacacac acacaccaaa
     2461 gcttagaaag tagtatatca gagtgtgtcc cacagtctat acctgtctat acatcctcac
     2521 ttgcaaatgt tcactgcagt aaatggttgc tctggttcag gatctctggt ttctgtgaca
     2581 ccatcaatat tgcatcctca ttgggacttc tcccagttac tctgttgttg ccctgtgtca
     2641 ttgaaatcct gaagctctgg atggacagga ctggcccttt cacagatgga ggagattttg
     2701 gagtgggtca gttcagagcc ctaggcctgg gcctggtggt agctgagctg gttagcaggc
     2761 cttctcttcc tcatctgcac caccaggggg agctgttgtt ttgtttttta atgtataagt
     2821 attctatctg catgtacacc tccgtgctag aagagggcat cagataatca tgagtcacca
     2881 tgtggttgct gggaattgaa ctcaggacct ctggaagagc agacagtgct cttaactgct
     2941 gagccatcac acaagccaac caggggactt cttatagcac taatctctag taaaagcagc
     3001 ctttcccaat gcatgcctcc gaggtcatta ttaagtcaac attaagcttt cctgtgctct
     3061 tttctgagct gtacatttgt tatttcccca caacatgttt gttttcattg atcattatac
     3121 tgtctagaaa tagctaatgc cagagaaatg ggtccattac ttttaaattc agctttggat
     3181 agaaagcagc cagattcttt gtcaaagggt cacataaatg gcctctactg tctgtattac
     3241 tcacaacact acagtcttac aggctcaaaa cagccagtac tgttcacagt gctttcagca
     3301 ttcaatcatt tttctgatcc aaagtcccag agttccacat tcttacagaa acaaaaaaac
     3361 caacatggtc acactttttt aaaaagattt atttaatgta tgcgagtgca ctgtcgatat
     3421 tttcagacac accagaagag gatatcagat cccattaaag atggctgtga gccatcatgt
     3481 agttgctggg aattgaactc aggacctctg gaagtgtagt attcttaacc gcttagcttt
     3541 ccagctcccc tttccagcct cccctccttt ttttaatggt cacatttttt tcacagcaac
     3601 acccttactt gataccagct tctgtattag ttgcctatct attgctggga taaaacacca
     3661 tgaccaaaag caattcaaaa atttattttg gcttataatc tcgtgggcta gatgctcatg
     3721 gcagcaggca caagaagctg aaaggccaca tcagaaccta ctggaagcac acagtgaagt
     3781 ggaccagggc tataaccaca aagcctgccc ccagcgacat gcctcttcca gcaactctgt
     3841 atcctaaaag ttcctaacat ccccaaacag tgccacaaac cggggaccaa gtatttgaat
     3901 actttagacc acaggggcat tttccttcag tctacagcag gagatgagca ttctactgac
     3961 tgagccattt ccccagcctc gctgtttctc tcttgccacc ctaacaaatg gcgaataagg
     4021 aatactttct gattaaaaaa tacaaagctc ttgag
//
