LOCUS       XM_039088861            4003 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus ABI family member 3 binding protein
            (Abi3bp), transcript variant X49, mRNA.
ACCESSION   XM_039088861
VERSION     XM_039088861.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051346.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4003
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="11"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4003
                     /gene="Abi3bp"
                     /note="ABI family member 3 binding protein; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 49 ESTs, 2 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     12 samples with support for all annotated introns"
                     /db_xref="GeneID:363767"
                     /db_xref="RGD:1562717"
     CDS             106..2862
                     /gene="Abi3bp"
                     /codon_start=1
                     /product="target of Nesh-SH3 isoform X49"
                     /protein_id="XP_038944789.1"
                     /db_xref="GeneID:363767"
                     /db_xref="RGD:1562717"
                     /translation="MLSSLGCLLLCGSIALALGNAQKLPKGKKPSLKVHINTTSDSVL
                     LKFLRPNPNVKLEGFLLGYGSNVSPNQYFPLPTEGKFTEAVVDAEPKYLIVVRPAPPP
                     SQKKSCSGKSRTRKPLQLVVGTLTPSSVFLSWGFLINPHHDWTLPSHCSSDRFYTIRY
                     REKDKEKKWIFQLCPATETIVENLKPNTVYEFGVKDNIEGGIWSKIFNHKTIVGSKNK
                     VNGKIQSTYDQVHSVPAYVPRKLIPITIIKQVIQNVTHRASTKSPDKIPFGGTILVHL
                     IIPGLNDSTVKLPSSIMLEISDALKAQLAKNETLALPAESKTPEVEKVAGQPVTVTPE
                     TVSRSTKPTLASALDTAETALASSEEPWVVPGAKTSEDSRVVQPRTVPKDEQLSHKPD
                     PEVSQSETVLPPVTFRVEPPKTTIVPLETRDIPLIPVISPRPSEEELQTTMEQTDQST
                     QELFTTKIPRTTELAKTTQAPHRLHTTPVRPRIPERPHGRPALNKTTTRPDRTKSRGM
                     SHKNGVGPGTKQTPKPSSTGRNTSVDSHATRKPGLIPGTRHRHTSPRPVPPQRKPLPP
                     NNVTGKPGSAGIISSSRATSPPLKATLKPTGTATERPGAEKKQPTAPASEEEFGNTTD
                     FSSSPTKETDPLGKPRFIGPHVRYIPKPDNKPCSITDSVRRFPTEEATEGNATSPPQN
                     PPTNLTVVTVEGCPSFVILDWEKPLNDTVTEYEVISRENGSFSGKNKSIQITNQTFST
                     VENLKPDTSYEFQVKPKNPLGEGPASNTVAFSTESADPRVSEPISAGRDAIWTERPFN
                     SDSYSECKGKQYVKRTWYKKFVGVQLCNSLRYKIYLSDSLTGKFYNIGDQRGHGEDHC
                     QFVDSFLDGRTGQQLTSDQLPTKEGYFRAVRQEPVQFGEIGGHTQINYVQWYECGTTI
                     PGKW"
ORIGIN      
        1 gagcagcctc cctcctctgt cagtggagga cgtccactta aatgcagttc cagggttgca
       61 gggcacccag ccgcatcact ccccgtgtga gcaggcaaat gcaacatgct ctccagcctg
      121 gggtgtctac ttctctgtgg aagtattgca cttgctctgg gaaatgcaca gaaattgcca
      181 aaaggtaaaa agccaagcct gaaagtgcac atcaatacca ccagcgactc cgtcctcttg
      241 aagttcctgc gtccaaatcc gaacgtaaag ctggaaggat tcctcctggg atatggcagc
      301 aacgtgtctc caaaccagta tttccctctt cccacagaag gaaaattcac ggaggctgtg
      361 gttgatgcag agccgaagta tctgatagtc gtgcgacctg ctcctcctcc cagccagaag
      421 aagtcgtgct caggtaaatc tcgcactcgc aaacccctcc agctggtggt gggcacgttg
      481 acaccgagct ccgtcttcct gtcctggggg ttcctcatca acccccacca tgactggaca
      541 ttgccaagtc actgttccag tgacagattt tatacaattc gatatagaga aaaagataaa
      601 gaaaagaaat ggatttttca actctgccca gctactgaaa caattgtgga aaatctaaag
      661 cccaacacag tttatgaatt tggtgtgaaa gacaatatag aaggtggaat atggagtaag
      721 attttcaatc ataagactat tgttggaagt aaaaacaaag taaatgggaa aatccaaagc
      781 acttatgatc aggtccactc agtgccagca tatgtcccac ggaagctaat tccaataaca
      841 atcatcaagc aagtgattca gaatgttacc cacagggctt caaccaagtc cccagacaag
      901 attccttttg gaggaacaat attggttcat cttattattc ctggtcttaa cgattccact
      961 gtaaaacttc cctcatccat aatgcttgag atttcggatg ctctcaaggc acaattagct
     1021 aagaatgaaa cattggcttt accagcagaa tctaaaacgc cggaggttga aaaagtggca
     1081 gggcagccag taacagtgac tccggaaaca gtttcaagaa gcactaagcc caccctggct
     1141 agtgctttag acactgcaga gacagcactg gcttcaagtg aagagccatg ggtggtacct
     1201 ggagctaaaa catctgaaga ttccagagtt gtgcagcctc gaactgttcc aaaagatgaa
     1261 caactttccc ataaaccaga tcctgaggtc tctcaaagtg aaactgttct gcctcctgtc
     1321 acctttagag ttgagccacc aaagacaaca atagtgcctt tagagacacg ggacattcct
     1381 ctcatacctg tgatttcacc aagacctagt gaagaggaac tacaaaccac catggaacaa
     1441 acagaccagt ctacccaaga gctcttcaca actaagattc cacgaacaac tgaactggca
     1501 aagacaactc aggcaccaca cagattacac acaactcctg tgaggcccag aatacctgaa
     1561 aggccacatg gcaggcctgc cctgaacaaa acaactacaa gacctgatag aaccaaatcc
     1621 agagggatgt cccataaaaa tggagtagga ccaggaacca agcagacacc taagccatca
     1681 agcactggga gaaatacgtc agtagactca catgccacaa gaaaaccagg cttaatccca
     1741 ggaacacgtc atagacatac gtccccaaga cctgtgcctc cacagagaaa gcctttacca
     1801 ccgaataatg tcaccggaaa gccagggagc gcaggaatca tttcctccag tcgggcaact
     1861 tccccacccc tgaaggcaac actcaaaccc actggaacag ccacagagag accaggggca
     1921 gaaaaaaagc aaccaactgc tcctgcttca gaagaagaat ttggtaatac aactgacttt
     1981 agttcaagtc cgaccaaaga aaccgatccc cttgggaagc ccagattcat aggtccccat
     2041 gtgcgataca tcccaaagcc tgacaacaag ccctgttcca tcactgactc cgtcagacgc
     2101 ttcccgacag aggaagccac ggaagggaat gccaccagcc caccacagaa cccacccact
     2161 aacctcaccg tggtcactgt tgaaggctgc ccctcatttg tcatcttgga ctgggagaaa
     2221 cctctaaatg acaccgtcac tgaatatgaa gtcatatcca gagaaaatgg gtcattcagt
     2281 gggaagaaca agtccattca aattacaaat caaacgtttt ctacagtaga aaatctgaaa
     2341 ccagatacaa gctatgaatt ccaggtgaag cccaaaaatc cacttggcga gggccccgcc
     2401 agcaacacag tggcgtttag tacggaatca gctgacccaa gagtgagtga gccaatttct
     2461 gcagggagag acgccatctg gactgaaaga cccttcaatt cagactctta ctcagaatgt
     2521 aaaggcaagc agtatgttaa aaggacgtgg tataagaagt ttgtcggagt gcagctgtgt
     2581 aactctctca gatacaagat ttatttgagc gactccctca caggcaagtt ttacaacata
     2641 ggagatcaaa ggggccatgg agaagatcac tgccagtttg tagattcatt tttagatggc
     2701 cgcacaggac agcaacttac ctctgaccag ttacccacca aagaaggtta tttcagagct
     2761 gttcgtcagg aacctgtcca atttggagaa ataggtggtc atacccaaat caattatgtc
     2821 cagtggtatg aatgtgggac cacaatacct gggaaatggt agatgcaaca aaattatttc
     2881 taaagaactt ctggttcact atcgcaaaaa gaaacagtaa caacaacaac aacaacacaa
     2941 aacaccaaga atagtggtac ttgtcatacc tattcaagcc tatttttgtt tactgtgtgt
     3001 aagtttgcag tctaactgac agcagtacta gatgtttatt attagaaaag attactgaga
     3061 atatttatca ggttttacaa agtcattttt aaaaagcaag atattaacat taataaaata
     3121 acattttagg gaagctggct ccctagtcat attttaaaag atcatttgta tattatttat
     3181 cacactgttg taatgttttc agatactttt ataacaaaat tgtcaaaaat ctttaataat
     3241 ctttataaaa agtatttact ttattgatgt gtacgtgttg ttggtgaatt aattccacaa
     3301 acctcttctt ggtttaactt attggatcaa ataatcttca gcatatacat ttgacagaaa
     3361 gtagttcaaa tacgttgatg taaacttcca tttttagaat cagatgaaca gattttaagt
     3421 ttaaatagtt atatattcat gctaataatt ccttaactac cagcaaatta ttgcaaaaag
     3481 cctgaatctg taaattttat ttaaggcaga aacaagtaat aatctggtgt gtgtcagatg
     3541 ataatgcctt ttcttctgta cccatactac tatgtctcag atactttcaa gagcttcctg
     3601 taagccgttt ccagtggttc tatggtttcc agtggttcta tggttcagct gtatgtagag
     3661 actgggtgtg aggtcacatg gaaagataat gcatggtgag aagctatggt ttcataggat
     3721 atattatata tttatatgtt taggccatgg atgaatgtat cacagaatgt ttttgcgaca
     3781 atgtttactt aagctgtaac aaaactgact cattttatgg aaaaaaagaa aaaagcattg
     3841 ctttccttca tgtgtgggag ggagcctaga atattattgc ttgccctgaa aagatttttt
     3901 ttctgtatgt atctttcaac atgctttggt tttatcatta ctacattttg tattttcaag
     3961 caagtataaa caactgcaat aaaaagatgt aggtttttaa aaa
//
