LOCUS       XM_017598119            6042 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus ABI family member 3 binding protein
            (Abi3bp), transcript variant X1, mRNA.
ACCESSION   XM_017598119
VERSION     XM_017598119.2
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051346.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_017598119.3.
            
            On Jan 21, 2021 this sequence version replaced XM_017598119.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6042
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="11"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6042
                     /gene="Abi3bp"
                     /note="ABI family member 3 binding protein; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 49 ESTs, 3 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     18 samples with support for all annotated introns"
                     /db_xref="GeneID:363767"
                     /db_xref="RGD:1562717"
     CDS             111..4901
                     /gene="Abi3bp"
                     /codon_start=1
                     /product="target of Nesh-SH3 isoform X1"
                     /protein_id="XP_017453608.1"
                     /db_xref="GeneID:363767"
                     /db_xref="RGD:1562717"
                     /translation="MLSSLGCLLLCGSIALALGNAQKLPKGKKPSLKVHINTTSDSVL
                     LKFLRPNPNVKLEGFLLGYGSNVSPNQYFPLPTEGKFTEAVVDAEPKYLIVVRPAPPP
                     SQKKSCSGKSRTRKPLQLVVGTLTPSSVFLSWGFLINPHHDWTLPSHCSSDRFYTIRY
                     REKDKEKKWIFQLCPATETIVENLKPNTVYEFGVKDNIEGGIWSKIFNHKTIVGSKNK
                     VNGKIQSTYDQVHSVPAYVPRKLIPITIIKQVIQNVTHRASTKSPDKIPFGGTILVHL
                     IIPGLNDSTVKLPSSIMLEISDALKAQLAKNETLALPAESKTPEVEKVAGQPVTVTPE
                     TVSRSTKPTLASALDTAETALVLSEKTPETAQSVLIPESELLLSSLAPKGSPEFPEAK
                     TAFPSEKPGGSLASSEEPWVVPGAKTSEDSRVVQPRTATYDVVSSSATSDETEVEPHT
                     ATSDPILDSVPPKTSRTAEQPRATLAPSEASFDPRTVEIFTSPEVRPTTAAPQQTTSI
                     PSTPKRQSTPKPPRVKPAPEPETRPSAQSTKAPPHKTKKPGRRRPKTTRSPEVPKSKP
                     ALEPATVPPEILVPTIVPKPPQRPKATRRPEAPQIQPAHEPVTFGSEAPALAIVTTTD
                     IAPVISRTKASVTTLAPKSSRPRTRQRPKYKATPSPKIPQTKPADLGPITAEPSLAST
                     TKKVRRPRPKPKTTPHPEVPQTILVPATSLEPVIRTETPGTTLVPKLSQQPDFPHPKP
                     KTTRSPAAPPTELVSTTVFEPVIPLKEDPVTTIVPFTDLEPATDLETPVAFRTEAPRT
                     TLASKKSQRTRRPRPRPPKATLSPQAPKTKTVPAVVLEPVTLRPEVQVTTLAPKKTQI
                     KHRPRPKPKPIPSPEVAESKPVPTKEREPVTLRTESWVTTKAPKTPKRTHRVRPKPKT
                     TTPEAPLTKPVAATDLESSALSTEVPTTVVLTTALVPATLRTKSPKTTLAPSVQRTRR
                     PRPRPKTTARTDVSESKSVSDDLELVAFSTESPQKTIAPRQTTSPPPKLKPPHSRRPA
                     KEQVPKGSLHTTSKPKMPPSPEVVDITSVPKDEQLSHKPDPEVSQSETVLPPVTFRVE
                     PPKTTIVPLETRDIPLIPVISPRPSEEELQTTMEQTDQSTQELFTTKIPRTTELAKTT
                     QAPHRLHTTPVRPRIPERPHGRPALNKTTTRPDRTKSRGMSHKNGVGPGTKQTPKPSS
                     TGRNTSVDSHATRKPGLIPGTRHRHTSPRPVPPQRKPLPPNNVTGKPGSAGIISSSRA
                     TSPPLKATLKPTGTATERPGAEKKQPTAPASEEEFGNTTDFSSSPTKETDPLGKPRFI
                     GPHVRYIPKPDNKPCSITDSVRRFPTEEATEGNATSPPQNPPTNLTVVTVEGCPSFVI
                     LDWEKPLNDTVTEYEVISRENGSFSGKNKSIQITNQTFSTVENLKPDTSYEFQVKPKN
                     PLGEGPASNTVAFSTESADPRVSEPISAGRDAIWTERPFNSDSYSECKGKQYVKRTWY
                     KKFVGVQLCNSLRYKIYLSDSLTGKFYNIGDQRGHGEDHCQFVDSFLDGRTGQQLTSD
                     QLPTKEGYFRAVRQEPVQFGEIGGHTQINYVQWYECGTTIPGKW"
ORIGIN      
        1 gctcagagca gcctccctcc tctgtcagtg gaggacgtcc acttaaatgc agttccaggg
       61 ttgcagggca cccagccgca tcactccccg tgtgagcagg caaatgcaac atgctctcca
      121 gcctggggtg tctacttctc tgtggaagta ttgcacttgc tctgggaaat gcacagaaat
      181 tgccaaaagg taaaaagcca agcctgaaag tgcacatcaa taccaccagc gactccgtcc
      241 tcttgaagtt cctgcgtcca aatccgaacg taaagctgga aggattcctc ctgggatatg
      301 gcagcaacgt gtctccaaac cagtatttcc ctcttcccac agaaggaaaa ttcacggagg
      361 ctgtggttga tgcagagccg aagtatctga tagtcgtgcg acctgctcct cctcccagcc
      421 agaagaagtc gtgctcaggt aaatctcgca ctcgcaaacc cctccagctg gtggtgggca
      481 cgttgacacc gagctccgtc ttcctgtcct gggggttcct catcaacccc caccatgact
      541 ggacattgcc aagtcactgt tccagtgaca gattttatac aattcgatat agagaaaaag
      601 ataaagaaaa gaaatggatt tttcaactct gcccagctac tgaaacaatt gtggaaaatc
      661 taaagcccaa cacagtttat gaatttggtg tgaaagacaa tatagaaggt ggaatatgga
      721 gtaagatttt caatcataag actattgttg gaagtaaaaa caaagtaaat gggaaaatcc
      781 aaagcactta tgatcaggtc cactcagtgc cagcatatgt cccacggaag ctaattccaa
      841 taacaatcat caagcaagtg attcagaatg ttacccacag ggcttcaacc aagtccccag
      901 acaagattcc ttttggagga acaatattgg ttcatcttat tattcctggt cttaacgatt
      961 ccactgtaaa acttccctca tccataatgc ttgagatttc ggatgctctc aaggcacaat
     1021 tagctaagaa tgaaacattg gctttaccag cagaatctaa aacgccggag gttgaaaaag
     1081 tggcagggca gccagtaaca gtgactccgg aaacagtttc aagaagcact aagcccaccc
     1141 tggctagtgc tttagacact gcagagacag cactggtcct cagtgagaag acaccagaaa
     1201 cagcacaatc tgttctaatc cctgagtctg aattgctttt gagctcttta gctccaaaag
     1261 ggtccccaga gtttcctgag gcgaaaacag ccttcccatc cgagaaacct gggggttccc
     1321 tggcttcaag tgaagagcca tgggtggtac ctggagctaa aacatctgaa gattccagag
     1381 ttgtgcagcc tcgaactgca acttacgatg ttgtctcaag ctcagcaact tctgatgaga
     1441 ctgaagtaga gccccacaca gcaacaagtg atcctattct ggactctgtc ccacctaaaa
     1501 cttctagaac tgctgaacag ccaagggcaa cactggctcc aagtgaagca tcgtttgatc
     1561 cccgaaccgt ggaaatcttc accagtcctg aagtacgacc tacgacagct gctccccagc
     1621 aaactacatc tattccttcc acacccaaac gacagtcaac tcccaaaccg ccaagagtca
     1681 aacctgcccc agaacccgag actcgaccat ctgcacagtc aacaaaggct ccaccacaca
     1741 agaccaaaaa gccaggtcgc cgccgtccta aaaccacccg tagtccagaa gtacccaagt
     1801 ccaagcctgc tctggaaccc gctactgtac caccagagat cttggtaccc acaattgttc
     1861 ccaaaccacc ccagagacct aaagccacac gcaggccaga ggcaccccaa atccagcctg
     1921 ctcatgagcc ggtcacattt ggaagcgaag cccctgccct agccatagtt actactacag
     1981 acattgcacc tgtaatttcg agaaccaagg catcagtgac aacattagct ccaaaatcgt
     2041 caagaccaag aactcgtcaa cgtcccaaat acaaagccac ccccagccca aagatacctc
     2101 agactaaacc agcagacttg ggacctatca ctgctgagcc atctttagct tcaacaacaa
     2161 aaaaagtccg ccgtccacgt cccaaaccta aaaccacacc ccacccagaa gtacctcaga
     2221 caattttggt tcctgctaca agccttgaac cagttattag aactgagact ccagggacaa
     2281 cattagttcc caaactgtct caacaaccag actttccaca tcccaaacct aaaaccacaa
     2341 ggagccctgc agcacctccg acagaactgg tttctactac agtctttgaa ccagttattc
     2401 ccttaaaaga ggatccggtg accacaatag ttccttttac agaccttgaa cctgctacag
     2461 accttgaaac acctgttgct tttagaaccg aggcccccag gacaacgcta gctagcaaaa
     2521 aatcacaaag aacccgccgt ccacgaccaa gaccacctaa agccacattg agccctcaag
     2581 cacctaaaac aaaaactgtt cctgctgtag tcctggaacc tgtcactctt agacctgagg
     2641 tccaagtaac aacactagct cctaaaaaaa cacagataaa acatcgtcca cgtcccaaac
     2701 caaagcctat accaagtcct gaagtagccg agtccaagcc agttcccaca aaagagcgtg
     2761 aacctgtgac actcagaact gagagttggg tgacaacaaa agctcctaaa acaccaaaac
     2821 gaacccatcg tgtgcgcccc aaacctaaaa ccacaactcc tgaggctcct ctaactaaac
     2881 ctgttgctgc tacagatctt gaatccagtg ctcttagcac cgaagtgcct acaaccgtgg
     2941 ttcttactac agcccttgta cctgccactc ttagaaccaa gtctcccaag acaacattag
     3001 ctcctagtgt acagcggaca cgccgtccac gtcccagacc taaaaccaca gcaagaactg
     3061 acgtgtctga gtccaagtcg gtttctgatg acctggaatt ggttgcgttt agtactgagt
     3121 caccacagaa gacaatcgct cccaggcaga caaccagccc gcctcccaag ctcaaaccac
     3181 cacactcaag aaggccagca aaagagcaag tccctaaggg atccctgcat actacttcaa
     3241 agccaaaaat gccaccaagt cctgaagtgg tagacattac atctgttcca aaagatgaac
     3301 aactttccca taaaccagat cctgaggtct ctcaaagtga aactgttctg cctcctgtca
     3361 cctttagagt tgagccacca aagacaacaa tagtgccttt agagacacgg gacattcctc
     3421 tcatacctgt gatttcacca agacctagtg aagaggaact acaaaccacc atggaacaaa
     3481 cagaccagtc tacccaagag ctcttcacaa ctaagattcc acgaacaact gaactggcaa
     3541 agacaactca ggcaccacac agattacaca caactcctgt gaggcccaga atacctgaaa
     3601 ggccacatgg caggcctgcc ctgaacaaaa caactacaag acctgataga accaaatcca
     3661 gagggatgtc ccataaaaat ggagtaggac caggaaccaa gcagacacct aagccatcaa
     3721 gcactgggag aaatacgtca gtagactcac atgccacaag aaaaccaggc ttaatcccag
     3781 gaacacgtca tagacatacg tccccaagac ctgtgcctcc acagagaaag cctttaccac
     3841 cgaataatgt caccggaaag ccagggagcg caggaatcat ttcctccagt cgggcaactt
     3901 ccccacccct gaaggcaaca ctcaaaccca ctggaacagc cacagagaga ccaggggcag
     3961 aaaaaaagca accaactgct cctgcttcag aagaagaatt tggtaataca actgacttta
     4021 gttcaagtcc gaccaaagaa accgatcccc ttgggaagcc cagattcata ggtccccatg
     4081 tgcgatacat cccaaagcct gacaacaagc cctgttccat cactgactcc gtcagacgct
     4141 tcccgacaga ggaagccacg gaagggaatg ccaccagccc accacagaac ccacccacta
     4201 acctcaccgt ggtcactgtt gaaggctgcc cctcatttgt catcttggac tgggagaaac
     4261 ctctaaatga caccgtcact gaatatgaag tcatatccag agaaaatggg tcattcagtg
     4321 ggaagaacaa gtccattcaa attacaaatc aaacgttttc tacagtagaa aatctgaaac
     4381 cagatacaag ctatgaattc caggtgaagc ccaaaaatcc acttggcgag ggccccgcca
     4441 gcaacacagt ggcgtttagt acggaatcag ctgacccaag agtgagtgag ccaatttctg
     4501 cagggagaga cgccatctgg actgaaagac ccttcaattc agactcttac tcagaatgta
     4561 aaggcaagca gtatgttaaa aggacgtggt ataagaagtt tgtcggagtg cagctgtgta
     4621 actctctcag atacaagatt tatttgagcg actccctcac aggcaagttt tacaacatag
     4681 gagatcaaag gggccatgga gaagatcact gccagtttgt agattcattt ttagatggcc
     4741 gcacaggaca gcaacttacc tctgaccagt tacccaccaa agaaggttat ttcagagctg
     4801 ttcgtcagga acctgtccaa tttggagaaa taggtggtca tacccaaatc aattatgtcc
     4861 agtggtatga atgtgggacc acaatacctg ggaaatggta gatgcaacaa aattatttct
     4921 aaagaacttc tggttcacta tcgcaaaaag aaacagtaac aacaacaaca acaacacaaa
     4981 acaccaagaa tagtggtact tgtcatacct attcaagcct atttttgttt actgtgtgta
     5041 agtttgcagt ctaactgaca gcagtactag atgtttatta ttagaaaaga ttactgagaa
     5101 tatttatcag gttttacaaa gtcattttta aaaagcaaga tattaacatt aataaaataa
     5161 cattttaggg aagctggctc cctagtcata ttttaaaaga tcatttgtat attatttatc
     5221 acactgttgt aatgttttca gatactttta taacaaaatt gtcaaaaatc tttaataatc
     5281 tttataaaaa gtatttactt tattgatgtg tacgtgttgt tggtgaatta attccacaaa
     5341 cctcttcttg gtttaactta ttggatcaaa taatcttcag catatacatt tgacagaaag
     5401 tagttcaaat acgttgatgt aaacttccat ttttagaatc agatgaacag attttaagtt
     5461 taaatagtta tatattcatg ctaataattc cttaactacc agcaaattat tgcaaaaagc
     5521 ctgaatctgt aaattttatt taaggcagaa acaagtaata atctggtgtg tgtcagatga
     5581 taatgccttt tcttctgtac ccatactact atgtctcaga tactttcaag agcttcctgt
     5641 aagccgtttc cagtggttct atggtttcca gtggttctat ggttcagctg tatgtagaga
     5701 ctgggtgtga ggtcacatgg aaagataatg catggtgaga agctatggtt tcataggata
     5761 tattatatat ttatatgttt aggccatgga tgaatgtatc acagaatgtt tttgcgacaa
     5821 tgtttactta agctgtaaca aaactgactc attttatgga aaaaaagaaa aaagcattgc
     5881 tttccttcat gtgtgggagg gagcctagaa tattattgct tgccctgaaa agattttttt
     5941 tctgtatgta tctttcaaca tgctttggtt ttatcattac tacattttgt attttcaagc
     6001 aagtataaac aactgcaata aaaagatgta ggtttttaaa aa
//
