LOCUS       NM_001419101            2731 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus ATP-binding cassette, subfamily G (WHITE), member
            3-like 2 (Abcg3l2), mRNA.
ACCESSION   NM_001419101 XM_039092154
VERSION     NM_001419101.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2731)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 2731)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000014.1.
            
            On Mar 28, 2023 this sequence version replaced XM_039092154.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643286.37823.1,
                                           SRR26360186.2278340.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on manual assertion, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-73                JAXUCZ010000014.1  4838045-4838117     c
            74-298              JAXUCZ010000014.1  4834878-4835102     c
            299-358             JAXUCZ010000014.1  4832748-4832807     c
            359-473             JAXUCZ010000014.1  4832054-4832168     c
            474-626             JAXUCZ010000014.1  4831414-4831566     c
            627-763             JAXUCZ010000014.1  4827473-4827609     c
            764-915             JAXUCZ010000014.1  4823268-4823419     c
            916-987             JAXUCZ010000014.1  4822302-4822373     c
            988-1235            JAXUCZ010000014.1  4819797-4820044     c
            1236-1318           JAXUCZ010000014.1  4817175-4817257     c
            1319-1408           JAXUCZ010000014.1  4811779-4811868     c
            1409-1530           JAXUCZ010000014.1  4810257-4810378     c
            1531-1685           JAXUCZ010000014.1  4806437-4806591     c
            1686-1775           JAXUCZ010000014.1  4801697-4801786     c
            1776-1861           JAXUCZ010000014.1  4800787-4800872     c
            1862-2731           JAXUCZ010000014.1  4798053-4798922     c
FEATURES             Location/Qualifiers
     source          1..2731
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="14"
                     /map="14p22"
     gene            1..2731
                     /gene="Abcg3l2"
                     /note="ATP-binding cassette, subfamily G (WHITE), member
                     3-like 2"
                     /db_xref="GeneID:360910"
                     /db_xref="RGD:1359703"
     exon            1..73
                     /gene="Abcg3l2"
                     /inference="alignment:Splign:2.1.0"
     exon            74..298
                     /gene="Abcg3l2"
                     /inference="alignment:Splign:2.1.0"
     CDS             93..2051
                     /gene="Abcg3l2"
                     /note="ATP-binding cassette, sub-family G (WHITE), member
                     3-like 2"
                     /codon_start=1
                     /product="ATP-binding cassette, subfamily G (WHITE),
                     member 3-like 2"
                     /protein_id="NP_001406030.1"
                     /db_xref="GeneID:360910"
                     /db_xref="RGD:1359703"
                     /translation="MSSSNDPTVIPMTERRHSDLPETNTSDPETLTGEAVVLSFHNIS
                     YIETVQSGFPLCQKTRVMERLSSISGIMGPGLNAIMGPQDGSRSLLLDVLAARRDPSG
                     LSGDILVNGKPRPANFKCTSGYVPHNDVVWGTVTVRDNLEFSAALRLPMTITRDEKRR
                     RINEVLELLHLDEKQNTKPRSKELRKRTSIAVELIADHPILFLDDPTTYLDFTTTTYI
                     ISVLRRMSMKGKTIIFSINQPQYSIFRFFDSLSLVASGKLMFHGPARDALEYFTSAGY
                     PADFFLDIINGGFCDTEEDGHEVGNYEELFERQYQATKKLVNMYAQSRLHSDTRARLD
                     QILGQQQLDRNSAVETTCATPFWHQLMWITYQSFKNIRGFLLVTVIQAVIKVTLAALV
                     GITFQFLENDCNEVQIRAGLLYLLTIFQCIASVGVGKLFVIDRDRFLHEHTSGYYRMS
                     CYFFGKLLADLIPRRLLPSTIVLITYFIAGGRMSMSSFFAMLFTVMMLDFSVSSLPLS
                     IGAGKNAVAVPKLLVTIYFVFMLFFSGLSLYSGSLPPQLSWIQYFSILHYGFKALLHN
                     EFLGQNFCPEDTMEELSRCHNYVICAGEEFLAIQGIDLSSWGFWENHLALACIMIILL
                     TITYVQLLQVKTLEVLRSRGRNFLQLFN"
     exon            299..358
                     /gene="Abcg3l2"
                     /inference="alignment:Splign:2.1.0"
     exon            359..473
                     /gene="Abcg3l2"
                     /inference="alignment:Splign:2.1.0"
     exon            474..626
                     /gene="Abcg3l2"
                     /inference="alignment:Splign:2.1.0"
     exon            627..763
                     /gene="Abcg3l2"
                     /inference="alignment:Splign:2.1.0"
     exon            764..915
                     /gene="Abcg3l2"
                     /inference="alignment:Splign:2.1.0"
     exon            916..987
                     /gene="Abcg3l2"
                     /inference="alignment:Splign:2.1.0"
     exon            988..1235
                     /gene="Abcg3l2"
                     /inference="alignment:Splign:2.1.0"
     exon            1236..1318
                     /gene="Abcg3l2"
                     /inference="alignment:Splign:2.1.0"
     exon            1319..1408
                     /gene="Abcg3l2"
                     /inference="alignment:Splign:2.1.0"
     exon            1409..1530
                     /gene="Abcg3l2"
                     /inference="alignment:Splign:2.1.0"
     exon            1531..1685
                     /gene="Abcg3l2"
                     /inference="alignment:Splign:2.1.0"
     exon            1686..1775
                     /gene="Abcg3l2"
                     /inference="alignment:Splign:2.1.0"
     exon            1776..1861
                     /gene="Abcg3l2"
                     /inference="alignment:Splign:2.1.0"
     exon            1862..2731
                     /gene="Abcg3l2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 actttccttc cctggcagcc tctaggaaga agcaagggac tctgtcggag gcttcgggtc
       61 cttgagccgc tgggaaggaa gaacctctca agatgtcttc cagtaacgac cccactgtaa
      121 taccaatgac agaaagacgt cacagtgacc ttcccgaaac aaacaccagt gacccggaga
      181 cactgactgg agaggctgtt gtgttgagtt ttcacaacat cagctacata gaaacagtgc
      241 agagcggctt tccactttgt cagaagacac gtgtgatgga aagactgtcc agcatcagtg
      301 ggatcatggg accaggcctc aatgccataa tgggacctca ggatgggagc agatctctgt
      361 tattagatgt cttagctgca aggagagatc caagtggatt atcaggagat attttggtaa
      421 acggtaaacc tcgacctgct aatttcaaat gtacatctgg ttatgtacca cataatgatg
      481 tggtgtgggg cacagtgacc gtgagagaca atttagagtt ctcagcagct ctccgtcttc
      541 caatgactat aacaagagat gaaaaaagaa ggaggatcaa tgaggtgctt gaacttcttc
      601 atctggatga aaaacaaaat accaagccta gatccaaaga actcaggaaa aggaccagta
      661 tagcagtgga gctgatcgct gaccatccca ttttgttctt ggatgatccc accacttact
      721 tagactttac aactacgact tatatcatat cagtcctgag aaggatgtcg atgaagggaa
      781 agacaatcat cttctccatc aatcagcctc agtactccat cttcagattc tttgatagcc
      841 tctccttagt ggcttcagga aaactcatgt ttcatggacc tgcacgggac gctctggagt
      901 acttcacatc tgcgggttac cctgcagact tcttcctgga catcattaat ggaggtttct
      961 gtgacacaga ggaagatggc catgaagttg gaaactatga agaacttttt gagagacaat
     1021 atcaagccac aaaaaaattg gtcaatatgt atgcccagtc ccgcttacac agtgacacaa
     1081 gagccagact ggatcaaatc ttggggcaac agcagctgga caggaactca gctgtggaga
     1141 ccacatgtgc cacccctttc tggcatcaac tcatgtggat tacctatcaa tcattcaaaa
     1201 atatccgggg ttttctactg gtcactgtga ttcaggctgt tatcaaagtc acactggcag
     1261 cactggtagg catcactttc cagttcctgg aaaatgattg taatgaagtc cagataagag
     1321 ccggcctcct ttacctgctc acaatcttcc agtgcatcgc aagtgtgggt gtaggcaagc
     1381 tctttgtgat tgacagggat cgctttctac atgagcacac cagtggatac tacagaatgt
     1441 catgctattt ctttgggaaa ttgctggctg acctaatacc caggaggctg ttgccaagta
     1501 ctatagtact cataacatac ttcatagcag gaggaagaat gagcatgagc tctttctttg
     1561 ctatgctatt taccgtcatg atgctggatt tttctgtcag ctccctacca ctgtctatag
     1621 gagccgggaa gaatgcagtg gctgtcccaa aactgcttgt gaccatctac tttgtgttca
     1681 tgctgttttt ttcaggttta tcactatatt ctggaagcct cccacctcag ctctcatgga
     1741 ttcaatactt tagcattctt cattatggct ttaaggcttt gctgcacaat gagttccttg
     1801 gacaaaactt ctgtccagaa gacacgatgg aagaactcag tagatgccat aactatgtaa
     1861 tatgtgctgg tgaagaattc ttggcgatcc agggcatcga tctctcatcg tggggcttct
     1921 gggagaatca cctggcttta gcttgtataa tgattatcct cttaacaatt acctatgtgc
     1981 agttattaca ggttaagaca ttagaagttc ttagatcccg ggggaggaat tttcttcagt
     2041 tgtttaacta aataccaaag tatcttctgt atgtctgtaa ttgtattcct ggacaaatgc
     2101 tacatccagc ctgacccaga gaggatccct ctgctgtgaa cactgatgaa cgtagagact
     2161 catggctgct cacagtacag ggctaaggga cactccagtg cttatctcca acaggacacc
     2221 tattgcgtgc cctctatagc tcagagcatt gtacagtaga aagagtgcag gagccagaat
     2281 atgagaagaa ggagtggaaa tgcaatattg tggtcctgca cagccaaggc aaccatggtc
     2341 tgtgtctcaa ctctacggct acctacagaa gactggatcc ctcatcagca cagaaggagc
     2401 agaggagaac tcaatgggtc catcccccat tctgctcaac tattggctac tggaagatca
     2461 tgggggagag gcagtcattg atttcacatg tatgttcaca tttgagccta gagactccag
     2521 tggaaagtcc gaaacactct gatcccacac acagccctgt ttaaactctg tgggtcataa
     2581 gacaaagatg tgggtgtgag aaagagactt gtaaagaaga gtatttgaag ggagtgtaag
     2641 gaaaatgaga gaggtggacg gagggggaaa tggctgaaat gcattatata tggaattgta
     2701 tatttttaaa aataaaatta tagaaaagca a
//
