LOCUS       NM_001398837            2543 bp    mRNA    linear   ROD 29-MAR-2024
DEFINITION  Rattus norvegicus ATP binding cassette subfamily F member 2
            (Abcf2), transcript variant 1, mRNA.
ACCESSION   NM_001398837 XM_006235929
VERSION     NM_001398837.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2543)
  AUTHORS   Ghosh,D., Lippert,D., Krokhin,O., Cortens,J.P. and Wilkins,J.A.
  TITLE     Defining the membrane proteome of NK cells
  JOURNAL   J Mass Spectrom 45 (1), 1-25 (2010)
   PUBMED   19946888
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000004.1.
            
            On Dec 27, 2021 this sequence version replaced XM_006235929.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643293.21231.1,
                                           SRR26643291.11540.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-84                JAXUCZ010000004.1  11487322-11487405
            85-290              JAXUCZ010000004.1  11488025-11488230
            291-503             JAXUCZ010000004.1  11490479-11490691
            504-686             JAXUCZ010000004.1  11491092-11491274
            687-858             JAXUCZ010000004.1  11491362-11491533
            859-954             JAXUCZ010000004.1  11493482-11493577
            955-1057            JAXUCZ010000004.1  11494321-11494423
            1058-1153           JAXUCZ010000004.1  11496205-11496300
            1154-1273           JAXUCZ010000004.1  11496511-11496630
            1274-1363           JAXUCZ010000004.1  11496709-11496798
            1364-1474           JAXUCZ010000004.1  11497050-11497160
            1475-1537           JAXUCZ010000004.1  11497746-11497808
            1538-1666           JAXUCZ010000004.1  11498029-11498157
            1667-1870           JAXUCZ010000004.1  11498648-11498851
            1871-2543           JAXUCZ010000004.1  11499395-11500067
FEATURES             Location/Qualifiers
     source          1..2543
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q11"
     gene            1..2543
                     /gene="Abcf2"
                     /note="ATP binding cassette subfamily F member 2"
                     /db_xref="GeneID:311959"
                     /db_xref="RGD:1304942"
     exon            1..84
                     /gene="Abcf2"
                     /inference="alignment:Splign:2.1.0"
     exon            85..290
                     /gene="Abcf2"
                     /inference="alignment:Splign:2.1.0"
     CDS             125..2008
                     /gene="Abcf2"
                     /note="isoform 1 is encoded by transcript variant 1;
                     ATP-binding cassette sub-family F member 2; ATP-binding
                     cassette, sub-family F (GCN20), member 2; ATP-binding
                     cassette, subfamily F (GCN20), member 2"
                     /codon_start=1
                     /product="ATP-binding cassette sub-family F member 2
                     isoform 1"
                     /protein_id="NP_001385766.1"
                     /db_xref="GeneID:311959"
                     /db_xref="RGD:1304942"
                     /translation="MPSDLAKKKAAKKKEAAKARQRPRKGHEENGDAVTEPQVAEEKN
                     ETNGRETTGDGEVDLLTKELEDFEMKKAAARAVTGVLASHPNSTDVHIINLSLTFHGQ
                     ELLSDTKLELNSGRRYGLIGLNGIGKSMLLSAVGKREVPIPEHIDIYHLTREMPPSDK
                     TPLQCVMEVDTERAMLEREAERLAHEDAECEKLMELYERLEELDADKAEMRASRILHG
                     LGFTPAMQRKKLKDFSGGWRMRVALARALFIRPFMLLLDEPTNHLDLDACVWLEEELK
                     TFKRILVLVSHSQDFLNGVCTNIIHMHNKKLKYYTGNYDQYVKTRLELEENQMKRFHW
                     EQDQIAHMKNYIARFGHGSAKLARQAQSKEKTLQKMMASGLTERVVSDKTLSFYFPPC
                     GKIPPPVIMVQNVSFKYTKDGPCIYNNLEFGIDLDTRVALVGPNGAGKSTLLKLLTGE
                     LLPTDGMIRKHSHVKIGRYHQHLQEQLDLDLSPLEYMMKCYPEIKEKEEMRKIIGRYG
                     LTGKQQVSPIRNLSDGQKCRVCLAWLAWQNPHMLFLDEPTNHLDIETIDALADAINEF
                     EGGMMLVSHDFRLIQQVAQEIWVCEKQTITKWPGDILAYKEHLKSKLVDEEPQLTKRT
                     HNV"
     exon            291..503
                     /gene="Abcf2"
                     /inference="alignment:Splign:2.1.0"
     exon            504..686
                     /gene="Abcf2"
                     /inference="alignment:Splign:2.1.0"
     exon            687..858
                     /gene="Abcf2"
                     /inference="alignment:Splign:2.1.0"
     exon            859..954
                     /gene="Abcf2"
                     /inference="alignment:Splign:2.1.0"
     exon            955..1057
                     /gene="Abcf2"
                     /inference="alignment:Splign:2.1.0"
     exon            1058..1153
                     /gene="Abcf2"
                     /inference="alignment:Splign:2.1.0"
     exon            1154..1273
                     /gene="Abcf2"
                     /inference="alignment:Splign:2.1.0"
     exon            1274..1363
                     /gene="Abcf2"
                     /inference="alignment:Splign:2.1.0"
     exon            1364..1474
                     /gene="Abcf2"
                     /inference="alignment:Splign:2.1.0"
     exon            1475..1537
                     /gene="Abcf2"
                     /inference="alignment:Splign:2.1.0"
     exon            1538..1666
                     /gene="Abcf2"
                     /inference="alignment:Splign:2.1.0"
     exon            1667..1870
                     /gene="Abcf2"
                     /inference="alignment:Splign:2.1.0"
     exon            1871..2543
                     /gene="Abcf2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gctgtgattg gctggggagc cggccgcacg cggaggagct caaggagcag ctctgttgcg
       61 acagaggccg agcggcgagg ccccactcct gaaagaacag taactacccc tgtggctcat
      121 catcatgcct tccgacctgg ctaagaagaa ggcagccaaa aagaaggaag ccgccaaagc
      181 tcgacagcgg cccaggaagg gacatgaaga aaatggagat gctgtcacag aacctcaggt
      241 ggcagaggag aaaaatgaga ccaatggcag agagaccaca ggtgatggag aagtggattt
      301 gctgaccaag gagctggagg actttgagat gaagaaagct gctgctcgag ctgtcaccgg
      361 tgtcctggct tctcacccca acagtactga cgtccatatc atcaacctct cactcacctt
      421 tcatggtcaa gagctgctca gcgacaccaa actggaatta aactcaggcc ggcgctacgg
      481 cctcattggc ttaaatggaa ttggaaagtc catgctgctc tctgccgttg gaaaacgtga
      541 agtacccatc cctgagcaca tcgacatcta ccatctgact cgggagatgc cccctagcga
      601 taagacaccc ttgcagtgtg tgatggaggt ggacacagag cgggccatgc tggagagaga
      661 ggctgagcgc ttggctcatg aggatgcgga gtgtgagaag ctcatggaac tctatgaacg
      721 gttggaagag ctggatgctg acaaagctga gatgagggcc tcaaggatct tacacggatt
      781 gggtttcaca cctgccatgc agcgcaagaa gctgaaagac ttcagtggtg gctggcggat
      841 gagagttgct cttgctagag ccctcttcat tcggcccttc atgctgctgc tggacgagcc
      901 taccaaccac ctggacctgg atgcttgcgt gtggctggaa gaggaactca agactttcaa
      961 gcgtatcctg gtccttgtgt cccattccca ggacttcctg aatggggtct gcaccaatat
     1021 catccacatg cacaacaaga aactgaagta ctacacgggt aattatgatc agtatgtgaa
     1081 gacacggctg gagctggaag agaaccagat gaagaggttt cactgggagc aggaccagat
     1141 agcacacatg aagaactaca ttgccaggtt tggccatggc agtgccaagc tggcccggca
     1201 ggctcaaagc aaagagaaaa cactacagaa aatgatggca tccggactga cagaaagggt
     1261 tgtgagtgac aagacgctat cattttattt cccaccgtgt ggtaagatcc caccacctgt
     1321 cattatggtg cagaacgtga gcttcaagta tacaaaagac gggccttgca tctacaataa
     1381 tctagaattt ggcattgacc ttgacacacg agtggctctg gtagggccca acggagcagg
     1441 gaagtccact ctgttgaagc tgctaactgg agagcttctg cctacagatg gaatgatccg
     1501 gaagcattct catgtcaaga tagggcgtta ccatcagcac ttacaggagc agctggacct
     1561 ggacctttcc cctttggagt acatgatgaa gtgctaccca gagatcaagg agaaggagga
     1621 aatgaggaag atcattggga gatatggcct cactgggaaa cagcaggtga gcccaatccg
     1681 gaacctgtca gatgggcaga agtgccgagt gtgtctggcc tggctggcct ggcagaatcc
     1741 gcacatgctc tttctggacg agcctaccaa tcacctggac atcgagacca ttgatgctct
     1801 ggcagatgcc atcaatgagt tcgagggtgg catgatgctc gtcagccatg acttcagact
     1861 catccagcag gttgcacagg agatttgggt ctgtgagaag cagacaatca ccaagtggcc
     1921 tggagacatc ctagcctaca aggagcacct caagtccaag ctggtggatg aggagcccca
     1981 gctcaccaag aggacccaca acgtgtgagc cctcagctag gcttgggtca ggaatgccac
     2041 ctggagactg ccagctgaca cctgaccagc cactcaggac aggaccctgg ggccgcactc
     2101 ccgcactgcc gcaatgctgc ccccagcctc tcccctcagc ctgccttcgc tgcatcctat
     2161 ctccagctgg acagcgcctg tccatttcct accctccttc catttgggtc tgtctgtctg
     2221 gactcggctg gctgttccct ccagaccctt gctggtgacc ttgccctgaa agatgcagcc
     2281 aggggtgcct gggttaaccc cagggcccaa gccctgctct ggccctggaa ggattcaaga
     2341 gcctcattat gggtttcggt gatgttggag aaataccacc agcccatcac ccccgttctt
     2401 tattgcttct ggtttggagc tctgggccag ggcctagtcc tggtcggtat tttaataatt
     2461 atttaacagt gtagatctat gtgtcatcta ccaagtgtcc aataaaggag gaggaagcta
     2521 cacaccttcc ttcctgggtc tct
//
