LOCUS       NM_001108446            3452 bp    mRNA    linear   ROD 23-MAR-2023
DEFINITION  Rattus norvegicus ATP binding cassette subfamily E member 1
            (Abce1), mRNA.
ACCESSION   NM_001108446 XM_001064797 XM_001070444 XM_001070484 XM_341669
VERSION     NM_001108446.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3452)
  AUTHORS   Hlavac V, Brynychova V, Vaclavikova R, Ehrlichova M, Vrana D, Pecha
            V, Kozevnikovova R, Trnkova M, Gatek J, Kopperova D, Gut I and
            Soucek P.
  TITLE     The expression profile of ATP-binding cassette transporter genes in
            breast carcinoma
  JOURNAL   Pharmacogenomics 14 (5), 515-529 (2013)
   PUBMED   23556449
REFERENCE   2  (bases 1 to 3452)
  AUTHORS   Franckenberg S, Becker T and Beckmann R.
  TITLE     Structural view on recycling of archaeal and eukaryotic ribosomes
            after canonical termination and ribosome rescue
  JOURNAL   Curr Opin Struct Biol 22 (6), 786-796 (2012)
   PUBMED   23031510
  REMARK    Review article
REFERENCE   3  (bases 1 to 3452)
  AUTHORS   Hopfner KP.
  TITLE     Rustless translation
  JOURNAL   Biol Chem 393 (10), 1079-1088 (2012)
   PUBMED   23091275
  REMARK    Review article
REFERENCE   4  (bases 1 to 3452)
  AUTHORS   Hlavata I, Mohelnikova-Duchonova B, Vaclavikova R, Liska V, Pitule
            P, Novak P, Bruha J, Vycital O, Holubec L, Treska V, Vodicka P and
            Soucek P.
  TITLE     The role of ABC transporters in progression and clinical outcome of
            colorectal cancer
  JOURNAL   Mutagenesis 27 (2), 187-196 (2012)
   PUBMED   22294766
REFERENCE   5  (bases 1 to 3452)
  AUTHORS   Borel F, Han R, Visser A, Petry H, van Deventer SJ, Jansen PL and
            Konstantinova P.
  CONSRTM   Reseau Centre de Ressources Biologiques Foie (French Liver Biobanks
            Network), France
  TITLE     Adenosine triphosphate-binding cassette transporter genes
            up-regulation in untreated hepatocellular carcinoma is mediated by
            cellular microRNAs
  JOURNAL   Hepatology 55 (3), 821-832 (2012)
   PUBMED   21932399
REFERENCE   6  (bases 1 to 3452)
  AUTHORS   Ghosh D, Lippert D, Krokhin O, Cortens JP and Wilkins JA.
  TITLE     Defining the membrane proteome of NK cells
  JOURNAL   J Mass Spectrom 45 (1), 1-25 (2010)
   PUBMED   19946888
REFERENCE   7  (bases 1 to 3452)
  AUTHORS   Crawford DC, Zheng N, Speelmon EC, Stanaway I, Rieder MJ, Nickerson
            DA, McElrath MJ and Lingappa J.
  TITLE     An excess of rare genetic variation in ABCE1 among Yorubans and
            African-American individuals with HIV-1
  JOURNAL   Genes Immun 10 (8), 715-721 (2009)
   PUBMED   19657357
REFERENCE   8  (bases 1 to 3452)
  AUTHORS   Liu,D.Z., Tian,D.L. and Ren,Y.
  TITLE     [Expression and clinical significance of ABCE1 in human lung
            adenocarcinoma]
  JOURNAL   Zhonghua Zhong Liu Za Zhi 30 (4), 296-297 (2008)
   PUBMED   18788636
REFERENCE   9  (bases 1 to 3452)
  AUTHORS   Le Roy F, Bisbal C, Silhol M, Martinand C, Lebleu B and Salehzada
            T.
  TITLE     The 2-5A/RNase L/RNase L inhibitor (RLI) [correction of (RNI)]
            pathway regulates mitochondrial mRNAs stability in interferon
            alpha-treated H9 cells
  JOURNAL   J Biol Chem 276 (51), 48473-48482 (2001)
   PUBMED   11585831
  REMARK    Erratum:[J Biol Chem 2002 Apr 12;277(15):13354]
REFERENCE   10 (bases 1 to 3452)
  AUTHORS   Bisbal C, Martinand C, Silhol M, Lebleu B and Salehzada T.
  TITLE     Cloning and characterization of a RNAse L inhibitor. A new
            component of the interferon-regulated 2-5A pathway
  JOURNAL   J Biol Chem 270 (22), 13308-13317 (1995)
   PUBMED   7539425
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473972.1.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_341669.3, XM_001064797.1, XM_001070444.1, XM_001070484.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMD00132261,
                              SAMD00132262 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..3452
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="19"
                     /map="19q11"
     gene            1..3452
                     /gene="Abce1"
                     /gene_synonym="Oabp; Rns4i"
                     /note="ATP binding cassette subfamily E member 1"
                     /db_xref="GeneID:361390"
                     /db_xref="RGD:1305301"
     exon            1..99
                     /gene="Abce1"
                     /gene_synonym="Oabp; Rns4i"
                     /inference="alignment:Splign:2.1.0"
     exon            100..229
                     /gene="Abce1"
                     /gene_synonym="Oabp; Rns4i"
                     /inference="alignment:Splign:2.1.0"
     CDS             127..1926
                     /gene="Abce1"
                     /gene_synonym="Oabp; Rns4i"
                     /note="ATP-binding cassette, sub-family E (OABP), member
                     1; ATP-binding cassette, subfamily E (OABP), member 1"
                     /codon_start=1
                     /product="ATP-binding cassette sub-family E member 1"
                     /protein_id="NP_001101916.1"
                     /db_xref="GeneID:361390"
                     /db_xref="RGD:1305301"
                     /translation="MADKLTRIAIVNHDKCKPKKCRQECKKSCPVVRMGKLCIEVTPQ
                     SKIAWISETLCIGCGICIKKCPFGALSIVNLPSNLEKETTHRYCANAFKLHRLPIPRP
                     GEVLGLVGTNGIGKSTALKILAGKQKPNLGKYDDPPDWQEILTYFRGSELQNYFTKIL
                     EDDLKAIIKPQYVDQIPKAAKGTVGSILDRKDETKTQAVVCQQLDLTHLKERNVEDLS
                     GGELQRFACAVVCIQKADIFMFDEPSSYLDVKQRLKAAITIRSLINPDRYIIVVEHDL
                     SVLDYLSDFICCLYGVPSAYGVVTMPFSVREGINIFLDGYVPTENLRFRDASLVFKVA
                     ETANEEEVKKMCMYKYPGMKKKMGEFELAIVAGEFTDSEIMVMLGENGTGKTTFIRML
                     AGRLKPDEGGEVPVLNVSYKPQKISPKSTGSVRQLLHEKIRDAYTHPQFVTDVMKPLQ
                     IENIIDQEVQTLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRLMAARVVKRFI
                     LHAKKTAFVVEHDFIMATYLADRVIVFDGVPSKNTVANSPQTLLAGMNKFLSQLEITF
                     RRDPNNYRPRINKLNSIKDVEQKKSGNYFFLDD"
     exon            230..315
                     /gene="Abce1"
                     /gene_synonym="Oabp; Rns4i"
                     /inference="alignment:Splign:2.1.0"
     exon            316..413
                     /gene="Abce1"
                     /gene_synonym="Oabp; Rns4i"
                     /inference="alignment:Splign:2.1.0"
     exon            414..531
                     /gene="Abce1"
                     /gene_synonym="Oabp; Rns4i"
                     /inference="alignment:Splign:2.1.0"
     exon            532..669
                     /gene="Abce1"
                     /gene_synonym="Oabp; Rns4i"
                     /inference="alignment:Splign:2.1.0"
     exon            670..739
                     /gene="Abce1"
                     /gene_synonym="Oabp; Rns4i"
                     /inference="alignment:Splign:2.1.0"
     exon            740..836
                     /gene="Abce1"
                     /gene_synonym="Oabp; Rns4i"
                     /inference="alignment:Splign:2.1.0"
     exon            837..926
                     /gene="Abce1"
                     /gene_synonym="Oabp; Rns4i"
                     /inference="alignment:Splign:2.1.0"
     exon            927..1048
                     /gene="Abce1"
                     /gene_synonym="Oabp; Rns4i"
                     /inference="alignment:Splign:2.1.0"
     exon            1049..1270
                     /gene="Abce1"
                     /gene_synonym="Oabp; Rns4i"
                     /inference="alignment:Splign:2.1.0"
     exon            1271..1330
                     /gene="Abce1"
                     /gene_synonym="Oabp; Rns4i"
                     /inference="alignment:Splign:2.1.0"
     exon            1331..1389
                     /gene="Abce1"
                     /gene_synonym="Oabp; Rns4i"
                     /inference="alignment:Splign:2.1.0"
     exon            1390..1500
                     /gene="Abce1"
                     /gene_synonym="Oabp; Rns4i"
                     /inference="alignment:Splign:2.1.0"
     exon            1501..1643
                     /gene="Abce1"
                     /gene_synonym="Oabp; Rns4i"
                     /inference="alignment:Splign:2.1.0"
     exon            1644..1766
                     /gene="Abce1"
                     /gene_synonym="Oabp; Rns4i"
                     /inference="alignment:Splign:2.1.0"
     exon            1767..1878
                     /gene="Abce1"
                     /gene_synonym="Oabp; Rns4i"
                     /inference="alignment:Splign:2.1.0"
     exon            1879..3452
                     /gene="Abce1"
                     /gene_synonym="Oabp; Rns4i"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ttggccggtg gcggtaagaa cacgctgtgt gctaagacct gacggctagc cctgctttgg
       61 ctactgcacg gcccattgga aggggaccgt tgtctccaga agagctggat attctgtgtt
      121 acaattatgg cagacaagtt aacaagaatc gctattgtca accacgacaa atgcaaacct
      181 aaaaaatgtc gacaggagtg caaaaaaagt tgccccgtag tccggatggg aaaattatgc
      241 atagaggtta caccccagag caaaatagca tggatttctg aaactctttg tattggttgt
      301 ggtatttgta ttaagaaatg tccctttggc gccttatcaa ttgtcaattt gccaagcaac
      361 ttggaaaaag aaacaacaca tcgctattgt gccaatgcct tcaagcttca caggttgcct
      421 atccctcgtc caggtgaagt tttgggatta gttggaacta atggtattgg aaagtcaact
      481 gctctaaaaa ttttagccgg aaagcaaaag ccaaaccttg gaaagtatga tgatccgcct
      541 gattggcaag agattttgac ttatttccgt ggatctgaat tacaaaatta cttcaccaag
      601 attctagaag atgacctaaa agccattatc aaacctcaat atgtagatca aattcccaag
      661 gcagcaaagg ggacagtggg ctctattctg gaccgaaaag atgaaacaaa gacacaggca
      721 gtcgtctgtc agcagctaga tctgactcac ctgaaggaac ggaacgtgga agatctctcc
      781 ggaggggagc tgcagagatt cgcttgtgcc gtggtttgca tacagaaggc tgacattttt
      841 atgtttgatg aaccttctag ttaccttgat gtcaagcaac gtttaaaggc tgccattact
      901 attcgatctc taataaatcc agatagatac atcattgtgg tggagcatga tctaagtgta
      961 ctagactatc tgtctgactt catctgctgt ctgtatggtg tgccaagtgc ttatggtgtt
     1021 gtcactatgc cttttagtgt gagagaaggc ataaatatat ttttggatgg ctatgttcca
     1081 acagagaact tgaggttcag ggatgcatca cttgtcttta aggtagctga gacagcaaat
     1141 gaagaagaag ttaaaaagat gtgcatgtat aaataccccg ggatgaagaa gaagatgggc
     1201 gagttcgagc tagcaattgt agctggagag ttcactgact cagaaatcat ggtgatgctg
     1261 ggggaaaacg gtacaggtaa aaccacattt atcagaatgc ttgctggaag gcttaagcca
     1321 gacgaaggag gagaagtacc agttctaaat gtcagttata agccacagaa aatcagtccc
     1381 aaatcaacag gaagtgttcg ccagttacta catgaaaaga tcagagatgc ttacactcat
     1441 ccacagtttg tgactgacgt aatgaagccc ctacaaattg aaaacatcat tgaccaagag
     1501 gtgcagacgt tgtctggtgg tgaactgcag cgtgtagctt tagccctttg tctgggcaag
     1561 cctgctgacg tctatttaat tgacgagcca tctgcatatt tggattctga gcaaagatta
     1621 atggcagctc gggtcgtcaa acgtttcatt ctccatgcaa agaagacagc ttttgttgta
     1681 gagcatgact tcatcatggc cacctaccta gcagatcgcg tcatcgtttt tgatggtgtt
     1741 ccttctaaga acacagttgc aaacagtcct cagactcttt tggctggcat gaacaaattt
     1801 ttgtctcagc tcgaaattac gttcagaaga gaccccaaca attacagacc gaggataaat
     1861 aagctcaatt caatcaagga tgtagaacaa aagaagagtg gaaactactt tttcttggat
     1921 gattagattg aatctgaact tatcaataag ccatttactt actgggattt ttatcatata
     1981 aaactttaat caggttttat ggccccacat actctggagc ttgaagtatg attttcttaa
     2041 tgtgacatcg aaagccagtt gtcttgtgaa gtcttgttta agagctattc tgttcttaac
     2101 attaaacctt tgtgcatacc acactaacat ggagacattt caaatatcac ttacctccag
     2161 attatcacga tctgtgggga gattttcagt tgtgtattat attcatgtac cagatccttc
     2221 ctggtgttgc ccatctttga aatcttgcat acaatctgca cttgcctgtt tgctaagtgt
     2281 accagtctaa tggactgccc tcgtctacaa gccagtcaca aacttactgc tgcagtccgt
     2341 ccgaagcacc agggctgcat ctgctacttg gttcagtctg tgcactgtgt tttctatcag
     2401 tgtgtgcttc tgaggaacgg tgtctgctac aaacaccgtt gttgaaagat gtttatgacc
     2461 aacttatgca ttgtttttaa tgggtttttg gtgcttttga acatttgtca aaaattattt
     2521 cagtacccta atttaactgg tttttttttt tgttcttaca ttctacaagc tctataacaa
     2581 cattcacagt aatgttactt ttataaatat atatataatc actgatcaag attagggaga
     2641 aaacatttct gaagaatatt tgcttcctgt aaaaccatag gcttgggctg aggagatggt
     2701 tcaatcagta aagtacaagc cactcattct tgagaaccgc atgtgagact tagtgggact
     2761 cgctaatacc agccaatctg ggagtgaggt caagcagatc catacagctc actggccggc
     2821 cagcctaaca gtgctctggc cccaacacag tgtacacaca cacacacaca cacacacaca
     2881 cacacacaca cacacacaca caccctacag atacagtctt tatagttggt gcctacgtat
     2941 ctggatttta ggggtttagt tttgttttat tttgagacag tgtgtcctac agcccaaatt
     3001 ggcctcaaat tagttattga atttctcagc ccatgcctag gcttaggtta cgcagtactg
     3061 aggatcaagc ccaaggcttg gtgtgtccta ggcaagcact ctaacaactg agctacatcc
     3121 cagccctaca tgtttctaga ctacagcagc caaggacacc cttaacccct gcggggagcc
     3181 tgggcaaagg cagtaaggcg tccattgctg cactgcgcac gcacatgtag gtttatgccc
     3241 aactggaatt ataagggccg tggactacaa ccaacaatgc aagcagaact ttaaataaca
     3301 gatcttgatt aatttggaaa caatgatagt ttgttctgag tgcaactcat taggccttct
     3361 aaaaatgaat ttatatataa tccataaata tctgttgtaa aagaacgcaa atctgcagaa
     3421 gtatatggaa taaaaactct ccttcatcag tt
//
