LOCUS       XM_039087440            8258 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus ATP binding cassette subfamily A
            member 9 (Abca9), transcript variant X1, mRNA.
ACCESSION   XM_039087440
VERSION     XM_039087440.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051345.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039087440.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8258
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..8258
                     /gene="Abca9"
                     /note="ATP binding cassette subfamily A member 9; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 5 ESTs, 2 long SRA reads, 15 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 79 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:287788"
                     /db_xref="RGD:1305931"
     CDS             1024..5985
                     /gene="Abca9"
                     /codon_start=1
                     /product="ATP-binding cassette sub-family A member 9
                     isoform X1"
                     /protein_id="XP_038943368.1"
                     /db_xref="GeneID:287788"
                     /db_xref="RGD:1305931"
                     /translation="MKFLKISASAFLRTFTSTSLKSFKKNKQVKMRKRRLRLGQQMWA
                     LLCKNWLRKFRMRRETLLEWLLSFLLILLAYQLSSNLHQVHDAPEMSMMDLGRVDDFN
                     DSNYIIVFAPESETTHEIMNIAALAPFMKGRTIVACPDESSMSELNLNYSIDAVRVIF
                     KDTFSYHLKFSWGQRIPKTKEHKDHTAPCEPFKNKMVCENSVFWEKGFVAFQTAINAG
                     IIEVTTNHSVMEELMSVIGSVMKMQPFIAQGGVATDFFIFFCVISFSSFIYYLSVNVT
                     QERQSITTLMAMMGLRESAFWLSWGLMYAGFILVVATLMSLIVKSTQVVVLTGFMVVF
                     LLFLLYGLSLITLSFLMSVLLKKPFLTGLAVFLLTVFWGSLGFTALYKHLPAFMEWIL
                     CFLSPFAFINGMAQLIHLDYDVNSNVNLNSPNNSYLILATLFMLVLDALLYLALALYF
                     DKILLSKYGHQRSPLFFLKSSYWFQRRGADHVVLENEIDSAPSLNDSLEPVSPEFQGK
                     EAIRIKNLRKEYTGKHGKVEALRGLGFDIYEGQITALLGHSGAGKTTLINTLSGLSPP
                     TTGSITIYNQTVSETEDSYAVPKLTGVCPQSNIQFGFLTVQENLRLFAKIKGILPQEV
                     EQEVRQVLRDLEMENIQDTLAQNLSGGQKRKLTFGIAILGDPQVLLLDEPTAGLDPLS
                     RHHIWNLLKERRSGRVIVFSTQFMDEADILADRKVFISNGRLRCAGSSLFLKKKWGIG
                     YHLSLHLNETCDPESITSLVKKHIPDARLTAQSDEQLVYILPLERTNKFPDLYRDLDR
                     CSNHGIEDYDVSMTTLNEVFLKLEGKSMAEEPDAGVCGRLLSDGAKDVESLVELERVL
                     PLDSSGSSVSGMALWRQQLCAVAKVRFLKLKNERRSLMTMLLLFGISFVPQLLEHLVY
                     KVYHKSYSWGLSPSMYFLSPGQLPQDPLTHLLVINKTGSSIDNFIHSLRQQGIALDVD
                     ALGTRNGKEEALYNGAVTVLGDEKDLRFSVACNAKRLNCFPVLADILSNGLLGIFNSS
                     ERIQTDRSTVFEDHMLYEYGFMSNAFFWIPVAASLTPYIAMGSISDHKKKVLSQLWTS
                     GLYPSAYWCGQALVDIPIYFLILLLMQIMDSVFSSEEIMSVIESLLIQIPCSIGYASS
                     LIFLTYVISFVFRNGRKNSGIWSFFFLIVTIFFIVATDINEYGFLQLLFCTLLIPPFT
                     LIGSLLIFSEVSYDSVDYLGSSESQLVFLALLIPYLHFLLFFFILRCLERYIRKKTLR
                     VDPVFRISPRSCRAFPNPEDPGEEDEDVQMERVRTSGAMTTPQMDEKPVIIASCLRKE
                     YTVKTKRCFSKTKKKIATRNISFCVKKGEVLGLLGHNGAGKSTTISMITGDTVPTAGQ
                     VFLKGSSGSAALGFLGYCPQENVLWPNLTVKEHLEVYAAVKGLRKKEAIVTITRLVNA
                     LKLQDQLKALVKTLSEGVKRKLCFVLSILGNPSVVLLDEPSTGMDPEGQQQMWQAIRA
                     TFTNTERGALLTTHYMAEAEAVCDRVAIMVSGRLRCIGSIQHLKSKFGKDYLLEMKLK
                     TPALVESLNTEILRLFPQAARQERYSSLMVYKLPVEDVRPLSEAFFKLERLKENFDLE
                     EYSLSQSTLEQVFLELSKEQELGDFDEEGSSSVKWKLLPQEEL"
ORIGIN      
        1 tggttggaga cagagaaact ttcttcctgg gtcccaagaa gttaactaat gtaacaatct
       61 cttcctaccc ctcccccacc tctccttttc ggaggcagat atattgcata tgtgtacgca
      121 ttcagataaa gtccagaaga caaccttggc ccttggctat tatccttaga aacgttgtcc
      181 atccacctcc ctagagacaa ggtctcctat tggttggatc attagtaagg ctaggcgggc
      241 tagcagcaaa ccccagggaa tcttcctgcc tccctccccc ctcatcacta tgaatttatc
      301 ccccaaagcc aatactcctg acattacatg ggttcgggga atcgaactca gttcctaatg
      361 cttgcaaggt aaggacttta cttggcgagc ctccccaggc tgagaataca atctctcaat
      421 attatgcttt ctaacgttag aactgtggtg caagcagcat gcacgcaatg cagtatgggt
      481 aaaaatccag acgcaccctc ttaccctgaa aatagtcaca ttgctccatt gccacgtgta
      541 gattcagctt taaaaaaaaa atccaggaaa ggctttgaga cagcagctta tcctacttgt
      601 gtgtttattt ctgtaattta ggaaattctt ttctgctcca tcttctccga gctggccttt
      661 atactgtttt ttatttaaag tactcttgag aatccactct cctattgtga atttaatcca
      721 aaaggggaaa aaaaatttta aagcccagta ctggtctggt agttgctaac gttccagtct
      781 gtccagccaa ccatttgcaa ccacagattc cctgctgagg aactggcggg aggcagagaa
      841 agaaaaaaac cagtccagga gtgcaagcag agagcgtttg gcagccagtc tgagccctca
      901 gaagaattct cttcagaaac cggagcaaaa cagaaccgtc tgtgataagg aaaatcaaaa
      961 ccaagatgta gcagcgactc gaaagaagaa atgtgacttc tcctccggga cacagatctc
     1021 tggatgaaat ttttgaagat ttctgcttca gctttcctca gaactttcac atctacttcc
     1081 ttgaagtcct ttaaaaaaaa taaacaagtc aaaatgagga agagacgctt gagactgggt
     1141 cagcaaatgt gggctcttct ctgcaagaac tggctcagga agttcaggat gagaagagag
     1201 acgctcctgg aatggcttct ctcatttctc ctaatactgt tggcatatca attatcctcc
     1261 aatttgcatc aagttcacga cgctcctgaa atgtctatga tggatctggg acgtgttgat
     1321 gactttaacg attctaatta tattattgtg tttgctcctg agtctgaaac cacccatgag
     1381 ataatgaaca tagcggcctt agctccattc atgaaaggaa ggacaatcgt ggcgtgtcct
     1441 gacgaaagca gcatgagtga actcaattta aactattcaa tagatgcagt gagagtcatc
     1501 tttaaggata cgttctcata tcatttgaaa ttttcatggg gtcagaggat ccctaagacg
     1561 aaagaacaca aagaccacac agctccttgt gaaccattca agaacaaaat ggtttgtgaa
     1621 aattcagtct tctgggaaaa gggctttgta gcctttcaga ctgccattaa tgctggcatc
     1681 atagaggtga caacaaacca ctcggtgatg gaagagctga tgtcagtgat tggttcggtt
     1741 atgaagatgc agccttttat tgcccaagga ggagtcgcca ctgacttctt tattttcttc
     1801 tgtgttattt ccttttcttc attcatatac tatttatcag tcaacgttac ccaggaaagg
     1861 caatccatta caacattaat ggcgatgatg ggtcttcgag agtctgcttt ctggctttcc
     1921 tggggtctga tgtacgctgg ctttatcctt gttgtggcta ctttgatgtc tcttattgtg
     1981 aaatccaccc aagttgtcgt cttaactggt ttcatggtgg tgttcctcct gtttctcctt
     2041 tatggcctgt ctttgataac tttatctttc ctcatgagtg tgttgttaaa gaaaccattt
     2101 cttactggct tggctgtctt cctccttacc gtcttctggg gaagcctggg attcacagca
     2161 ttgtacaaac atcttcctgc ttttatggaa tggatattgt gttttcttag cccctttgcc
     2221 tttattaatg gaatggccca gcttatacat ttggactatg atgtgaattc taatgtaaat
     2281 ttgaactctc caaacaactc gtacctaatc ctggccaccc tcttcatgtt ggttttggat
     2341 gctcttctct atttggcact ggcattgtat tttgacaaga ttttactcag taagtacgga
     2401 catcagcgtt ctccgttgtt tttcctgaag tcatcttact ggtttcaacg cagaggagct
     2461 gatcatgtgg tccttgagaa tgaaatagac tctgctcctt cactcaatga ctcattggaa
     2521 cccgtgtctc cagaattcca ggggaaagaa gctatcagga tcaaaaatct tagaaaggaa
     2581 tatacaggaa agcatggaaa agtagaagcc ttaagaggtc tgggatttga tatatacgaa
     2641 ggccagatca ctgcccttct tggtcatagt ggagctggga aaaccaccct gataaacaca
     2701 ctcagtggac tgtcacctcc tactacaggc tccatcacca tttataatca gacagtttca
     2761 gagacggagg actcctacgc tgtccccaag ctcactggag tttgcccaca atccaacata
     2821 cagtttggtt tcctcactgt gcaggagaat ctcaggcttt ttgccaagat aaagggaatt
     2881 ctgccgcagg aagtggagca agaggtacga caagttttac gggacttaga aatggaaaat
     2941 atccaagaca ctcttgctca gaatttaagt ggaggacaaa aaaggaagct gacttttggg
     3001 atcgccattt taggagaccc ccaggtcttg ctactggatg aaccaaccgc tgggttggac
     3061 ccgctctcaa ggcatcacat ttggaaccta ctgaaagagc ggagatcagg cagagtaatt
     3121 gtctttagta ctcagttcat ggatgaagct gatatcctgg ctgacaggaa ggtgtttata
     3181 tccaacggga gactgaggtg tgcaggctct tctctgtttc tgaagaagaa atggggcatc
     3241 ggctatcacc taagtttgca tttgaatgaa acttgtgatc cagagagtat aacatcactg
     3301 gtcaaaaagc acataccgga cgccagactg actgcacaaa gcgacgaaca gcttgtctat
     3361 atcttgcccc tggaaaggac aaacaagttt ccagaccttt acagggacct tgacagatgc
     3421 tctaaccacg gcattgagga ttatgatgtt tccatgacaa ccctgaatga ggtgttcctg
     3481 aagttagagg ggaagtccat ggctgaggaa ccggacgctg gagtttgtgg tcgcttgcta
     3541 agcgatgggg caaaagatgt ggaaagcctt gttgagctgg agcgagtgtt gcctctcgat
     3601 tcatcaggga gctcagtgag cggcatggcg ctgtggaggc agcagctctg cgcagtcgcg
     3661 aaggtccgct tcctcaagct caagaacgaa cgaagaagtc tgatgaccat gttattgctt
     3721 tttggcatta gctttgtgcc ccaacttttg gaacatctag tctacaaggt ataccacaaa
     3781 agttactcgt gggggctgtc tccaagtatg tatttccttt caccaggaca gttaccacag
     3841 gatcctctga cccacttact ggtcatcaat aaaacaggtt caagcattga taactttata
     3901 cattcactaa gacagcaggg catagcatta gacgtggatg ccctggggac cagaaatggc
     3961 aaagaagagg ctctgtacaa tggtgctgtc acagtgctgg gtgacgagaa ggacctcaga
     4021 ttttctgtag cgtgtaatgc caaaagacta aactgctttc cagtcctcgc ggatatcctt
     4081 agcaatgggc tgcttggaat ttttaactct tcagagcgca tccagaccga cagaagcaca
     4141 gtctttgaag accatatgct ttatgagtac ggattcatga gcaatgcatt tttctggata
     4201 ccagtggctg ccagcctcac cccttacatt gcgatgggca gcatcagcga ccacaaaaaa
     4261 aaagttcttt cccagctgtg gacttcaggc ctttacccat ctgcttactg gtgtgggcag
     4321 gctctggtgg atattcccat atacttcctg attctcctcc tcatgcaaat aatggacagt
     4381 gttttcagtt cggaggagat catgtctgtg attgagagcc tgttgattca aataccgtgc
     4441 agtattggat atgcgtcatc gctcatattc ttgacatatg tgatttcatt cgtttttcgt
     4501 aatggcagaa aaaatagtgg catctggtca tttttcttcc taattgtcac catcttcttc
     4561 atagttgcta ccgacataaa tgagtatggc tttctacagc tgctcttctg taccctttta
     4621 atacctccct tcacactgat tggctctcta ttaatttttt ctgaggtctc ttacgactcc
     4681 gtggattact taggatcatc agaatctcaa cttgtatttc tggcattgct gataccttac
     4741 cttcattttc tccttttctt tttcatcctg cgatgtctgg aaagatacat caggaagaag
     4801 acgctgagag tggaccctgt gttcaggatt tctccgagaa gctgccgtgc ttttccaaac
     4861 ccagaagatc ctggagaaga ggatgaagat gttcagatgg aaagagtgag aacgtcgggc
     4921 gccatgacaa ccccacagat ggacgagaaa ccagtcatca tcgcgagctg tctgcggaag
     4981 gaatatacag tcaaaacgaa aaggtgcttt tccaaaacga agaaaaagat tgccacaagg
     5041 aacatctcct tctgtgtcaa aaaaggtgaa gtcctagggc tcttaggaca caatggagct
     5101 ggcaaaagta caaccattag tatgataacg ggagacacag taccaaccgc aggtcaggtg
     5161 tttttgaaag ggagtagtgg cagtgctgcc ctcgggttct tggggtactg ccctcaggag
     5221 aatgtgctgt ggcccaacct gaccgtgaag gaacatctgg aggtgtatgc cgctgtgaag
     5281 gggctgagga agaaggaggc tatagtcacc atcacacggt tggtgaatgc cctcaaactg
     5341 caggaccagt tgaaagctct tgtcaagacc ctgtcagagg gagtgaagag aaagctttgt
     5401 tttgtgctga gcatcctggg gaacccttct gtggtgctgc tggatgagcc gtcaactggg
     5461 atggaccccg aggggcagca gcaaatgtgg caggcgatcc gggccacttt tacaaacaca
     5521 gagaggggcg ccctcctgac cacccactac atggcagagg ctgaggctgt gtgtgaccga
     5581 gtggccatca tggtgtctgg gaggctgagg tgtattggtt ctatccaaca tctaaagagc
     5641 aaattcggca aagattacct gctggagatg aagttgaaga ccccggctct ggtggagtcg
     5701 ctcaacacgg agatcctgag gctcttcccc caggctgctc ggcaggaaag gtactcttct
     5761 ctgatggtct ataagttgcc tgttgaggat gtacgacctt tgtccgaggc tttcttcaaa
     5821 ttggagagac tgaaagagaa ctttgacttg gaagaataca gcctctcaca gtccactctg
     5881 gagcaggtct tcctggagct ctccaaggag caggagctgg gtgatttcga tgaggaaggc
     5941 agttcctcag tgaagtggaa gctcctccca caggaagagc tttaaagttc taaatactct
     6001 gtatcttcca gctcacgtcc ctcttaaaga cagtatttaa aagcatcaat gtgccttact
     6061 tacatcaaat gtaacactaa atacttttga aacacacaca cacacacaca cacacacaca
     6121 cacacacaca cacacacaca cgtatgtgat ggccaatgtg atgtagaaca cacagccaga
     6181 ctatgctcaa tcaagtcaca ctgaaagcag tgtggagtct taaactgttt tcaatggtgc
     6241 tgatgcttct gagcgtggca aagagctgga ttgattttct ttacctgaat ttcaaaacag
     6301 taactatttt ctttcctcca tgtctaggta aggtataatt taaacaatat tgattttagg
     6361 gagaagggaa tccattggtt tctcaaccgc acagtatttg ggtttttttt tttttttttt
     6421 ttttttgtaa atcaccctga cctgttcact cattggttct tcttttctca tagtttgcag
     6481 agtgtgggtt gtggagaaat gttttgtcca ttgtgactgc aaaagcaatt tcaaaccggt
     6541 ggacgtaaac acttgcgacc attaaatgcc tgtgtgaata tttacatatg aatcagaaac
     6601 atttctgaaa tttgtttggt aaaaaaaaat gatgcaagtg gtggggaggg gtacccttag
     6661 gtgcaaggac caactttgtg tgtctttatt aaccaagtct gtgaatgcta caacctctct
     6721 actgcaacat cagtacagtc tccctggact cttagtgagg agatttttgt tgttactact
     6781 attattgcta ctaaataaac aaacattcac aggcagttcc atggaaagat ttccttgatg
     6841 ctagggctgt aacttcagag tgtatgtgaa cataaactgt cctcaatttg gaagaattct
     6901 ctagtagatt tttgagcaaa ggtgccaagc ctctcatttt aaaaagagac attactgctg
     6961 gctctgctga tgtacttggc tttatacact acaaattaat caattcaagc caatgcgtta
     7021 aaattgcttt atttgggtac ccatcgtcaa gtgcgatacc cagagtttga tccttgggcg
     7081 ggacccaaat tttggaagga gagaaccatc cctcaagttg ttttctgact tccacatact
     7141 tgcatgccgc gcctgcagca gagataaccg agctccggga cagacatgac gcctgagtgg
     7201 gagccggttc gagggttcgc accacacgtg gttaagcccc ctgcttgcat gcggcggact
     7261 ccaagaagat gtgcacctgg acttgccccc tgctgcaaac ttgtctctgg gctgatgggc
     7321 atctgggtca tgggaaagat cgttgtcagc acttatttct ttattttttc tttgtttgat
     7381 tctgaatatg atcttgacaa gacagagact tcctttaata ataggacaga aggtcgtgat
     7441 ctatttttga tcactaatac cacaagcttt cctgctcctc tttacagcag acagagcctc
     7501 tgatgacagg gactccaagg ttgcagatta tgtcttctct tatagataag gaaatataag
     7561 atttagcaaa gaattatact tataaggata gtgatgcttc ttctattagg tgttggtaga
     7621 actgttgaga aatgattcct tgagctttgg gtcggctatg aatattttac agagtataga
     7681 aacaggtggt ggcaaccagg tacttacagg ggaccatatg tgcatcgacc aacggatgct
     7741 ccattaccat atactggaga atatgattta aattttgata ggtgggttac taaggatgga
     7801 tatagggtca ggtatttgtc actgccttgg tcagaaagat tggcaagagc ccgtcctcct
     7861 tggtgtgtgc tctcagaaga agagaaatga gaggtaaggt cacagatcat cagatacttt
     7921 agacagggat cagacataca atattattgc cccaagcctt ggatgtacat ctataggact
     7981 aacaaagatg ggatcaaagg gttagcgata gaactagata cacagacctg atggcgtaag
     8041 atatgccaga cttgcggtcc cctgaaactt cctccttgat gtgacaaacg gaaaactaga
     8101 ctaggctggc tgactgtggc tcgtctgaaa aaaaaacaag ctataccttt ttgcaaaaaa
     8161 atcaaatgtt cttggccatg gtccaagatt gttatacaat aaaaattgta tataaatgtc
     8221 tgatgctctc tcagtaaagt tgcaacagct gaccacac
//
