LOCUS       NM_001281824            5647 bp    mRNA    linear   ROD 28-MAR-2024
DEFINITION  Rattus norvegicus ATP-binding cassette, subfamily A (ABC1), member
            8a (Abca8a), mRNA.
ACCESSION   NM_001281824 XM_001081603 XM_221100
VERSION     NM_001281824.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 5647)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000010.1.
            
            On or before Aug 9, 2013 this sequence version replaced
            XM_001081603.3, XM_221100.7.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643429.39649.1,
                                           SRR26643299.46356.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760400,
                                           SAMEA5760476 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-157               JAXUCZ010000010.1  95571495-95571651   c
            158-259             JAXUCZ010000010.1  95567078-95567179   c
            260-464             JAXUCZ010000010.1  95565209-95565413   c
            465-629             JAXUCZ010000010.1  95561888-95562052   c
            630-733             JAXUCZ010000010.1  95559774-95559877   c
            734-960             JAXUCZ010000010.1  95558912-95559138   c
            961-1102            JAXUCZ010000010.1  95557011-95557152   c
            1103-1288           JAXUCZ010000010.1  95556570-95556755   c
            1289-1430           JAXUCZ010000010.1  95555444-95555585   c
            1431-1596           JAXUCZ010000010.1  95551947-95552112   c
            1597-1655           JAXUCZ010000010.1  95549044-95549102   c
            1656-1766           JAXUCZ010000010.1  95548650-95548760   c
            1767-1936           JAXUCZ010000010.1  95547606-95547775   c
            1937-2056           JAXUCZ010000010.1  95547075-95547194   c
            2057-2195           JAXUCZ010000010.1  95546762-95546900   c
            2196-2286           JAXUCZ010000010.1  95546164-95546254   c
            2287-2426           JAXUCZ010000010.1  95545395-95545534   c
            2427-2543           JAXUCZ010000010.1  95542369-95542485   c
            2544-2739           JAXUCZ010000010.1  95538308-95538503   c
            2740-2906           JAXUCZ010000010.1  95535646-95535812   c
            2907-3040           JAXUCZ010000010.1  95534226-95534359   c
            3041-3178           JAXUCZ010000010.1  95527943-95528080   c
            3179-3286           JAXUCZ010000010.1  95527020-95527127   c
            3287-3460           JAXUCZ010000010.1  95524665-95524838   c
            3461-3574           JAXUCZ010000010.1  95523841-95523954   c
            3575-3694           JAXUCZ010000010.1  95521870-95521989   c
            3695-3760           JAXUCZ010000010.1  95517433-95517498   c
            3761-3852           JAXUCZ010000010.1  95516528-95516619   c
            3853-3973           JAXUCZ010000010.1  95514944-95515064   c
            3974-4091           JAXUCZ010000010.1  95514476-95514593   c
            4092-4183           JAXUCZ010000010.1  95512669-95512760   c
            4184-4344           JAXUCZ010000010.1  95508224-95508384   c
            4345-4420           JAXUCZ010000010.1  95507665-95507740   c
            4421-4515           JAXUCZ010000010.1  95507476-95507570   c
            4516-4635           JAXUCZ010000010.1  95506900-95507019   c
            4636-4776           JAXUCZ010000010.1  95506541-95506681   c
            4777-4856           JAXUCZ010000010.1  95504686-95504765   c
            4857-4912           JAXUCZ010000010.1  95503134-95503189   c
            4913-5647           JAXUCZ010000010.1  95501798-95502532   c
FEATURES             Location/Qualifiers
     source          1..5647
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q32.1"
     gene            1..5647
                     /gene="Abca8a"
                     /note="ATP-binding cassette, subfamily A (ABC1), member
                     8a"
                     /db_xref="GeneID:303638"
                     /db_xref="RGD:1307333"
     exon            1..157
                     /gene="Abca8a"
                     /inference="alignment:Splign:2.1.0"
     exon            158..259
                     /gene="Abca8a"
                     /inference="alignment:Splign:2.1.0"
     CDS             164..5011
                     /gene="Abca8a"
                     /note="ATP-binding cassette, sub-family A (ABC1), member
                     8a"
                     /codon_start=1
                     /product="ATP-binding cassette sub-family A member 8-A"
                     /protein_id="NP_001268753.1"
                     /db_xref="GeneID:303638"
                     /db_xref="RGD:1307333"
                     /translation="MVKREINVWQQTWALLCKNLLRKKRLKRDTLWELLYTAFILLCL
                     SLFFELHDVYEFSSLSDVDLGRVDSFNDSTFAIAYTPVTPTTQEIMNRVSLVSYMTGR
                     EILAFPNKENMTEFISKHYDDAVGIIFSTAYSYHLKFMKGTRIPIIKEHQDHTAHCFR
                     YEPAISCDLSAFWRHGFVALQAAINSAIIEVTTNHSVMEEMMSLTGKYIKIDSFIAQE
                     GTTTDYFLFLCIIAFSPLTYYISAGVTRERKKMKAFMTVMGLRDSAFWLSWGLLYGVI
                     VFIVTLFLTFVVYSVQFVFMTGFMMIFSLFFFYGLSLISLSFLMSVLLKKSFLTDLVV
                     FFLTVSCGSLGFAALYRYLPVSLEWLLSLLSPFAFMLGMTQLLRLDYDLESSGHPTGN
                     PNVVIATVFLLFFDGVFYLMLTFYFEKVLPGEYGRRHPPLFFLKSSFWTGQNPADRTV
                     LDNERDYEFPDDSFEPVSTDFHGKEVIRIRNLTKEYIQRSKRTEALKDLTLDVYKGQI
                     TAILGHSGAGKSTLLNVLSGLCVPTKGWVTIHDNKLSEMTDLESISKLTGVCPQCNVQ
                     FDFLTVRENLRLFAKIKGIQEVDNEVQRVLLALEMKNIQNTLVQNLSGGQKRKLTFGI
                     AILGDPQIFLLDEPTAGLDPFSRHRVWNLLKERKADRVVLFSTQFMDEADILADRKVF
                     ISQGKLRCAGSSLFLKKKWGIGYHLSLQLSETCVHERITSLVKQHIPDSKLSAESEGK
                     LNYILPLERTNKFPDLYRDLERCPDLGIENYGVSVTTLTEVFLKLEGKSAIDSDIGET
                     EDVQAGGTRGPGRLDGEQFVSLLNEMSKTKGGMALWWQQLCAVTRLRFLKLKYRRKSI
                     VILILILGIGLLHILSANVHRLVNQSDYCWELSPHTYFLTPGQRPQMPLTNLLIINKT
                     GEKIDDFLHSLEQQNIALEVDAFGTRNGTEDSQYNGAIIVAGGEKNYNFTLACNTKRL
                     NCFPVLVDIVSNALLGLFTPSVHIQTDRSSFPEDTGYTQFYHLLYMFSWILLMACVPP
                     YISMTSIDDYKNRAQFQLWISGLSPSAYWFGHALFEIPVYSALILSVYIAFYFSAPPE
                     SMITTRDLFIQILYAGGYAMSVIFMMYVISFICRKGRKNSGIWSLCFYIVSFISLCLM
                     LFKFFEDTFLFSSIALIPVVTLVGCTLLHFQNHEFPEISLYPERYYTYLFFLAPFFHF
                     LIFLFILRCLERKFGMKTMRMDPVFRISSRSDRVFNNPEEPEGEDEDVSLERVRTANA
                     LTSADFQEKPVIIASCLRKEYKGKKKCFVLKGKKKIATRNISLCVRKGEVVGLLGHNG
                     AGKSTSIKMITGEIKPSAGQVQLKGNSTGDTPEFLGYCPQENALWQHMTVREHLEIFA
                     AIKGMSKSDAAVAIARLADALKLQDQLKSPVKTLSEGVKRKLCFVLSILGNPSVVLLD
                     EPSTGMDPEGQQQMWQAIQATFANTERGALLTTHYMAEAEAVCDRVAIMVSGKLRCIG
                     SIQHLKSKFGKEYLLEMKVKTPTQVEPLNMEIMRLFPQAARQERYSSLMVYKLPREDV
                     QPLSQAFFKLETVKQSFDLEEYSLSQSTLEQVFLELSKEQELDDFEEELDPSVKWKLL
                     PQEEA"
     exon            260..464
                     /gene="Abca8a"
                     /inference="alignment:Splign:2.1.0"
     exon            465..629
                     /gene="Abca8a"
                     /inference="alignment:Splign:2.1.0"
     exon            630..733
                     /gene="Abca8a"
                     /inference="alignment:Splign:2.1.0"
     exon            734..960
                     /gene="Abca8a"
                     /inference="alignment:Splign:2.1.0"
     exon            961..1102
                     /gene="Abca8a"
                     /inference="alignment:Splign:2.1.0"
     exon            1103..1288
                     /gene="Abca8a"
                     /inference="alignment:Splign:2.1.0"
     exon            1289..1430
                     /gene="Abca8a"
                     /inference="alignment:Splign:2.1.0"
     exon            1431..1596
                     /gene="Abca8a"
                     /inference="alignment:Splign:2.1.0"
     exon            1597..1655
                     /gene="Abca8a"
                     /inference="alignment:Splign:2.1.0"
     exon            1656..1766
                     /gene="Abca8a"
                     /inference="alignment:Splign:2.1.0"
     exon            1767..1936
                     /gene="Abca8a"
                     /inference="alignment:Splign:2.1.0"
     exon            1937..2056
                     /gene="Abca8a"
                     /inference="alignment:Splign:2.1.0"
     exon            2057..2195
                     /gene="Abca8a"
                     /inference="alignment:Splign:2.1.0"
     exon            2196..2286
                     /gene="Abca8a"
                     /inference="alignment:Splign:2.1.0"
     exon            2287..2426
                     /gene="Abca8a"
                     /inference="alignment:Splign:2.1.0"
     exon            2427..2543
                     /gene="Abca8a"
                     /inference="alignment:Splign:2.1.0"
     exon            2544..2739
                     /gene="Abca8a"
                     /inference="alignment:Splign:2.1.0"
     exon            2740..2906
                     /gene="Abca8a"
                     /inference="alignment:Splign:2.1.0"
     exon            2907..3040
                     /gene="Abca8a"
                     /inference="alignment:Splign:2.1.0"
     exon            3041..3178
                     /gene="Abca8a"
                     /inference="alignment:Splign:2.1.0"
     exon            3179..3286
                     /gene="Abca8a"
                     /inference="alignment:Splign:2.1.0"
     exon            3287..3460
                     /gene="Abca8a"
                     /inference="alignment:Splign:2.1.0"
     exon            3461..3574
                     /gene="Abca8a"
                     /inference="alignment:Splign:2.1.0"
     exon            3575..3694
                     /gene="Abca8a"
                     /inference="alignment:Splign:2.1.0"
     exon            3695..3760
                     /gene="Abca8a"
                     /inference="alignment:Splign:2.1.0"
     exon            3761..3852
                     /gene="Abca8a"
                     /inference="alignment:Splign:2.1.0"
     exon            3853..3973
                     /gene="Abca8a"
                     /inference="alignment:Splign:2.1.0"
     exon            3974..4091
                     /gene="Abca8a"
                     /inference="alignment:Splign:2.1.0"
     exon            4092..4183
                     /gene="Abca8a"
                     /inference="alignment:Splign:2.1.0"
     exon            4184..4344
                     /gene="Abca8a"
                     /inference="alignment:Splign:2.1.0"
     exon            4345..4420
                     /gene="Abca8a"
                     /inference="alignment:Splign:2.1.0"
     exon            4421..4515
                     /gene="Abca8a"
                     /inference="alignment:Splign:2.1.0"
     exon            4516..4635
                     /gene="Abca8a"
                     /inference="alignment:Splign:2.1.0"
     exon            4636..4776
                     /gene="Abca8a"
                     /inference="alignment:Splign:2.1.0"
     exon            4777..4856
                     /gene="Abca8a"
                     /inference="alignment:Splign:2.1.0"
     exon            4857..4912
                     /gene="Abca8a"
                     /inference="alignment:Splign:2.1.0"
     exon            4913..5647
                     /gene="Abca8a"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 aaaagcagcc aggctgactg gaaatgctgg atgcaggcaa acagaatggg agcaacaccg
       61 atgtgataga gaccagggag acatagaacc cattttctta gagtgaggaa acgggggaaa
      121 accaagtctc aggacacgtt cttcagacaa tccaagtacc aagatggtga agagagagat
      181 aaacgtgtgg caacaaacat gggccttatt gtgcaagaat cttctcagaa aaaagagact
      241 gaaaagagac actctttggg aactcctgta cacagcattt atactacttt gtttatcttt
      301 attttttgaa ttgcatgacg tttatgagtt ttcgtcactg tctgatgtgg acttgggacg
      361 cgttgattca tttaatgact ccacctttgc gattgcatac acacctgtca ccccaacaac
      421 tcaggagata atgaaccgtg tctctttggt ctcttacatg acaggaagag aaatattggc
      481 ttttccaaac aaagaaaata tgacagagtt catttcaaaa cattatgatg atgcggtggg
      541 gatcatattc tccaccgctt actcctacca tctgaagttt atgaaaggaa ccaggatccc
      601 aatcataaag gagcatcagg accacacagc tcattgtttt cgatatgaac ctgccatttc
      661 ttgtgacctg tcagccttct ggagacatgg gtttgtggct cttcaagctg ccattaactc
      721 cgccatcata gaagtcacaa caaatcactc agtgatggaa gagatgatgt cacttaccgg
      781 aaaatacatc aagatagact ctttcattgc gcaagaagga acgacgaccg actacttcct
      841 ttttttatgt attattgctt tctccccact tacctactat atctcagctg gtgttacaag
      901 agaaaggaag aagatgaagg cctttatgac agtgatgggc cttcgggact cagcattctg
      961 gctgtcctgg ggtttgctct atggcgtcat tgtcttcatc gtgacccttt tcctgacatt
     1021 cgttgtatat tccgtccaat ttgtctttat gactggattt atgatgatct tcagtctctt
     1081 tttcttctat ggcttatctc tgatctcttt gtctttctta atgagtgtct tactaaagaa
     1141 gtctttcctc accgacttgg tggtgttctt cctcactgtt tcctgcggaa gtcttggatt
     1201 cgcagcatta tacagatacc ttcctgtgtc cttggagtgg cttctaagtt tgctaagccc
     1261 tttcgctttt atgcttggaa tgacccagct cttgcgcttg gactatgatc tggagtcaag
     1321 cgggcacccc acaggcaacc ccaatgtagt cattgccacc gttttcttgt tgttctttga
     1381 tggtgtcttc tacctgatgt tgacattcta ctttgagaag gttttaccgg gtgaatatgg
     1441 acgtcgacac ccacctttgt ttttcttgaa gtcctcattt tggacaggac aaaatccagc
     1501 agatcggact gtccttgaca atgaaaggga ctatgagttt cctgatgact cttttgaacc
     1561 tgtgtctaca gacttccatg ggaaggaagt catcagaatc agaaatctta caaaagaata
     1621 catacagagg tctaagcgca cagaagcttt gaaagatttg acattggatg tatataaagg
     1681 ccagattact gcaatccttg gtcacagtgg agctgggaaa tcaacgctat taaatgtcct
     1741 tagtggactg tgtgttccca ccaaaggttg ggtcactatc catgataaca aactctcaga
     1801 aatgactgac ttggaaagca tcagcaagct cactggagtt tgtccgcagt gcaatgtaca
     1861 atttgacttc ctcactgtaa gagaaaatct taggcttttt gctaaaataa aagggattca
     1921 agaagtggat aatgaggtac aaagggtttt gctggcactg gagatgaaaa atattcagaa
     1981 tactcttgtt caaaacctaa gtggtggaca gaagagaaag ctgacatttg gaatcgccat
     2041 tttaggagac cctcagattt tcctcctgga tgagcccact gctgggctgg atcccttttc
     2101 aaggcaccgg gtgtggaatc tcttgaagga gcgcaaagca gaccgcgtgg tcctcttcag
     2161 cacacagttc atggatgaag ctgacatcct ggctgatagg aaagtgttca tctcccaggg
     2221 gaagctgagg tgtgcaggat cttccttgtt tctgaagaaa aaatggggga ttggttatca
     2281 cttaagcttg cagctgagtg aaacgtgtgt gcacgaaaga ataacatcgc tcgtcaaaca
     2341 gcacatcccc gattccaagt tgtcggcaga aagcgaaggg aaactgaatt acatattacc
     2401 cctggaaagg acaaacaaat ttccagatct ttatagggat ctcgagagat gccccgacct
     2461 gggaattgag aactatggcg tttctgtaac aactctgact gaggtctttc tgaaactgga
     2521 aggaaaatca gcaattgatt cagatattgg tgagacagaa gatgtacaag ctggagggac
     2581 aagaggccca gggagacttg atggggagca atttgtctct ttacttaatg agatgagtaa
     2641 gacaaaaggg ggcatggctc tctggtggca gcaactctgt gcagtgacca ggcttcgctt
     2701 cttgaagtta aagtatagaa ggaaatccat cgttattctg attctgattt tggggattgg
     2761 acttctgcat attctgtcag caaatgttca caggttagtc aatcagagtg attactgttg
     2821 ggagctctct cctcatacgt acttcctcac acctggccaa cgaccacaga tgcccctcac
     2881 aaacttactg atcatcaaca aaacaggaga aaagatcgat gacttcctac attcgctgga
     2941 gcaacagaac atagctttgg aagttgatgc ctttgggact agaaacggca cagaggatag
     3001 ccagtataat ggcgctatca tcgtagcggg cggtgagaag aattacaact ttacattggc
     3061 atgcaatacc aagaggctga attgttttcc cgttctggtg gacatagtga gtaatgcgct
     3121 actcggactg ttcacaccat cagtgcacat tcaaactgat cgcagctcat ttcctgagga
     3181 tacaggctac acacagtttt accacttgct ttacatgttc tcatggatcc ttttgatggc
     3241 ctgcgtccct ccttacattt ccatgaccag cattgacgac tataagaaca gagctcagtt
     3301 ccagctgtgg atttcagggc tctccccttc tgcatactgg tttggtcatg ctctttttga
     3361 gatcccagtc tactctgcac tcattttgtc tgtgtacatt gctttctatt tctcggcccc
     3421 tccagagagt atgatcacaa ctagagatct gtttattcag atcctctatg ctggtggcta
     3481 tgctatgtca gttattttca tgatgtatgt gatttcattc atttgtcgca aggggagaaa
     3541 aaatagtggc atttggtcac tttgcttcta tattgtctct ttcatctctc tatgtcttat
     3601 gttatttaaa ttctttgaag ataccttttt gttttcttct attgccctga ttccagttgt
     3661 tacactggta gggtgtacat tattacattt tcagaatcat gagtttcctg aaataagttt
     3721 gtacccagaa aggtactata cctatctgtt tttcctagct cctttctttc attttctcat
     3781 cttcctattt attcttcgat gtctggaaag gaagtttgga atgaaaacaa tgagaatgga
     3841 tcctgtcttt agaatttctt caagaagtga tcgtgtattt aacaatccag aggaaccaga
     3901 aggggaagac gaagatgtga gtctagaaag agtgaggacg gcaaacgctt tgacgtcagc
     3961 ggacttccag gagaagccag tcatcattgc cagctgcctt cgtaaagagt acaagggaaa
     4021 gaagaaatgc ttcgttctta agggcaagaa gaagatagcc acaaggaaca tctctctttg
     4081 cgttcgcaaa ggcgaggtgg tcggattact gggacacaat ggagctggga aaagtacatc
     4141 cattaagatg ataactgggg aaatcaagcc aagtgctgga caggtgcagc tgaaagggaa
     4201 cagcacaggg gacaccccgg aattcctagg gtactgtcct caggaaaatg ctctgtggca
     4261 acacatgact gtgagggaac acctggagat atttgccgcc ataaagggga tgagcaaaag
     4321 cgatgctgcc gtggccattg caaggttggc agatgcactc aagctgcagg accagctgaa
     4381 gtctccggtg aagacgctgt cagagggagt gaagagaaag ctgtgctttg tgctgagcat
     4441 cctgggaaac ccttctgtgg tgcttctgga tgagccatcc accgggatgg accccgaggg
     4501 gcagcagcaa atgtggcagg cgatccaggc caccttcgca aacacagaga ggggcgccct
     4561 cctgaccacc cattacatgg cagaggctga ggctgtgtgt gaccgcgtgg ccatcatggt
     4621 gtctgggaag ctgagatgta ttggatccat ccaacatcta aagagcaaat ttggcaaaga
     4681 atatctcctg gagatgaagg tgaagacccc cacacaggtg gagcccctca acatggagat
     4741 catgaggctc ttcccccagg ctgctcggca ggaaaggtac tcttctctga tggtctataa
     4801 actgcccagg gaagatgtgc aacctttatc ccaggccttt ttcaaattag agacagttaa
     4861 acagagcttt gacctggagg agtacagcct ctcacagtcc actctggagc aggtcttcct
     4921 ggaactctcc aaggaacagg agctggatga ttttgaagag gaactcgatc cctcagtgaa
     4981 gtggaagctc ctcccacagg aagaggctta acactgaaat ttttcgctat ggctgttttt
     5041 tattctctag ctgcttaaag taatcttgtc ttgaatgcta catagccatt gtagatgagt
     5101 ataccatttg accatggagg tagaaggtgc tgattacatc acgagtgtac agctcttatg
     5161 aatgggatta ggattgtgag ggaaaaaaag ccattaaagc tattatctca cgctctacaa
     5221 tttttctttg taatatcgtc attttaaagc acattaattg tatgcattcc tgaatttaac
     5281 agtgacattc cagtatatga aggataccta tcctctattc tgtcctgtct caacatcttc
     5341 ccctcatcac ccttcatagc cccttatgtc cttctttcta catttcgttt tgcacgtatt
     5401 tctacatata aaagaaagca tatccttcct ggagtattgt gtcttaattt gttttacatg
     5461 gcgtcctcca gttctatgta ttttccttca gataacagaa ttcccttcat tgtcacaggt
     5521 taatgatact tcattacatt tctttagacc ttcgtttgtt gatgggtttc tagactgatt
     5581 ctttatgttg tatattgtga atagcaccac aataaacatg aatttgcaaa cagttccttt
     5641 tactgtt
//
