LOCUS       XM_039087437            5495 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus ATP binding cassette subfamily A
            member 8 (Abca8), transcript variant X1, mRNA.
ACCESSION   XM_039087437
VERSION     XM_039087437.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051345.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039087437.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5495
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5495
                     /gene="Abca8"
                     /note="ATP binding cassette subfamily A member 8; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 14 ESTs, 1 long SRA read, 8 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 29 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:303637"
                     /db_xref="RGD:1307069"
     CDS             411..5273
                     /gene="Abca8"
                     /codon_start=1
                     /product="ATP-binding cassette sub-family A member 8-B
                     isoform X1"
                     /protein_id="XP_038943365.1"
                     /db_xref="GeneID:303637"
                     /db_xref="RGD:1307069"
                     /translation="MIKREISVRQQTCALLQKNLLKKWRLRRETLMEWMSSLLLLLFL
                     CWYPHGHEATDFSSVPTKDLGRVDSFTQSGFMIGYTPVTSTTRQIMEKVAAVPFMAGR
                     KVLGLLDEENIRELTESHQEVIRVIFSDTFSYHLKFQFGQRIPKSREHGDHEAHCFEM
                     YEDVDCLISIFWKKGFVALQAAINAAIIETTTNHSVMEKLLSVSGKFMKIHPFVRQEG
                     ILTDFFIFTCIVSFSPITYFVSISVARERKKMKGLMMMMGLRDSAFWLSWGLLYAGFV
                     FVMALSLALVIKSVQFLILTSFTVVFSLFLLYGLSMISLAFLMSVLVRKSVLTGLTVF
                     LLTIFWGSLGFTALYRYLPAPLEWTLSLFSPFAFTLGMAQLLRVDYDLNSNAPPDPAG
                     SSNLIAATNFMLAFDALLYLALTMYFEKVLPNEYGHQRSPLFFLKPSFWVQPRKPAHV
                     ILEDGIDPAPLSGGSFEPVSPEFHGKESIRIRNISKEYKGKPSKIEALKDLTLDIYEG
                     QITALLGHSGAGKSTLLNILSGLSVPTKGSVTIYNNRLSEMADLESVFRISGVCPQSN
                     VQFDFLTVRENLRLFAKIRGVPPQEVEKEVQRVLLELEMKNIQDILARNLSGGQKRKL
                     TFGTAILGDSQIFLLDEPTAGLDPFSRHRVWNLLKERKADRVVLFSTQFMDEADILAD
                     RKVFISRGKLKCAGSSLFLKKKWGVGYHLSLQLKEVCVPENITSLVKQHIPEAKLSAE
                     RERTLVYTLPLETTYRFPELCQSLDSCPGLGIDSYGVSMTTLNEVFLKLEGKSAIEEP
                     EVDIVGEGQTERSGDTERLMEMEQTLSTLTETKKKTGSLALWRQQTCAIAKARLLKLK
                     HERKTLLSVLLVLGVALCPLLFESIKMKILQSAYTWDLSPHSYFLAPGQQPHGMLTQL
                     LIINKTEASIDDFIQSVERQNIALEVDASGARDGTDDPSFNGALTVSGGEKNHSFSLA
                     CNTKRLNCFPVLMDVLSNGLLGMVKPSARIRTDRSTYFVDEITNPLQQLGKTTFWLTL
                     TSACPPYIAMSSVTDYKNKVWFQLRVSGLFPSAYWFGQALVDIPLYCFVFLFMSLMDY
                     LLGFPDATLIVITHVLQIPCSVGYAISLIFLTYVISFISRKGKKNSGIWSLCFYIITM
                     FSVVAMLLDFNVDAILYCIIFLLPPSTLIGCLILSMHLFIYRISREESIVEPFLVFLI
                     PLLHVFIFIFTLRCLEWKFGKKTMRKDPIFRISPRNNDVHQNPEEPEGEDEDVQMERM
                     RTASALASTSFDEKPVIVASCLRKEYAGKWKHCLSKKKAKIATRNVSFCVRKGEILGL
                     LGHNGAGKSTSLKMISGDTKSTAGQVLLKGSREGDALGFLGYCPQENALWPNLTVKEH
                     LEVFATVLGLSKSHAAVTITRLADALQLQDQLKSPVKTLSEGVKRKLCFVLSILGNPS
                     ILLLDEPSTGLDPEGQQQIWQAIRAIIKNTDRGALLTTHYMAEAEALCDRVAILVSGR
                     LRCIGSIQHLKSKFGKDYLLEMKVKTLEQVELLNTEVLRLFPQAARQERYSPLMVYKL
                     PVEDVQPLSQAFFKLEKVKQTFDLEEYSLSQSTLEQVFLELSKEQEMDGFEEELDSSI
                     KWKLLPQEEV"
ORIGIN      
        1 aaaagcaaag cattaactgt tgctgacagc tccagtcaca gtgagcatct aacagaatag
       61 cttaggcata ctgcaagctt gggaatattg catttcctcc gttatacagt gacatagcca
      121 ggtgaccaaa tataactggt accgccctgc gggggctggg tgcacaacag taagagagga
      181 gcagccatcg cggtcacgtg accgtggtgt ttggcaagac gatcgagccg aggtcttaaa
      241 ctcccgctga gagcagcctt cggttgtgct cacggacagc aaacagttaa actcttgaaa
      301 ggtgttggag agcaggggga ggggggggag gtgactcact ttattctaaa cagtgccagc
      361 gaataaatgg tgcttctgga gcccttgctt cgcatttccc ttcaggcaac atgatcaaga
      421 gagagataag tgtgcgccaa caaacttgtg ctttattaca gaagaacctt cttaagaaat
      481 ggagactgag aagggagacc ttgatggaat ggatgagctc attgctcctt ctgcttttct
      541 tgtgttggta tccgcatggt catgaagcta ctgacttttc ctcagtgccc accaaggatc
      601 tgggacgagt cgattctttt acacaatctg ggttcatgat agggtataca cctgtcacca
      661 gcacgacccg acagataatg gagaaggtag ctgctgtccc tttcatggca ggtagaaaag
      721 tcctgggact gttggatgaa gaaaacatca gggaattaac agaaagtcat caggaagtaa
      781 taagagtcat tttctctgat acgttctcat atcatctgaa atttcaattt ggacagagaa
      841 tcccaaagtc aagggaacat ggagatcatg aagctcattg ttttgagatg tatgaagatg
      901 ttgactgtct gatatcaata ttctggaaga aaggatttgt ggctcttcaa gctgccatca
      961 atgctgccat tatagaaacc acgacaaacc attcggtgat ggagaaactg ctgtcagttt
     1021 cggggaaatt catgaagatc catcctttcg tcaggcaaga ggggattttg actgatttct
     1081 tcattttcac ctgcatcgtt tccttctccc caatcaccta ttttgtgtca atcagtgttg
     1141 caagagagag gaaaaagatg aagggcttga tgatgatgat gggtcttcga gattcagcat
     1201 tctggctatc ctggggtctg ctctatgctg gctttgtctt cgtgatggcc ctatccctgg
     1261 cacttgttat caagtctgtc cagtttctta ttctgaccag cttcacggtg gtctttagcc
     1321 tcttcctcct gtacggattg tctatgatct ctttggcctt cctaatgagc gtcttggtga
     1381 ggaagtctgt cctcactggc ctgactgtgt tccttctcac catcttctgg ggaagcctcg
     1441 gtttcacagc cctgtacaga tatctccctg cacctttgga atggactctc agtcttttta
     1501 gccccttcgc cttcacacta ggaatggccc agctcttacg cgtggactat gatttaaatt
     1561 ctaacgcacc ccctgatcca gctggtagct caaatctgat tgcagcaacc aatttcatgc
     1621 tggcatttga tgcgcttttg tatctggccc tgacgatgta ctttgaaaaa gttctgccaa
     1681 atgagtatgg acaccagcgg tctcccctgt ttttcctgaa accctcattt tgggtacaac
     1741 cacgaaagcc tgctcacgtg attcttgaag atggaataga tcccgctcct ttatcaggtg
     1801 gctcgtttga accggtgtcc ccagaattcc acgggaaaga atccatcaga atcagaaata
     1861 tttcaaaaga atacaaagga aagcccagta aaatagaagc cttgaaagac ctgacactgg
     1921 acatatatga aggccaaatc acagctttac ttggtcacag tggagctggg aagtcaacac
     1981 tgttaaatat ccttagtgga ttatctgtcc ctaccaaagg ttccgtcacc atctataaca
     2041 atagattatc agaaatggct gacctagaaa gtgtgttcag gatctcagga gtttgtccac
     2101 aatccaatgt tcaatttgac ttccttactg tgagagaaaa cctcagactt tttgctaaaa
     2161 taagaggagt tccaccccaa gaggtggaga aagaggtgca aagggttttg ctggaattgg
     2221 aaatgaaaaa tattcaagat atccttgctc gaaacctaag tggtggacag aagagaaagc
     2281 taactttcgg aactgccatt ttaggagatt ctcagatttt cctactggat gagcccactg
     2341 ctgggctgga tcccttttca aggcaccggg tgtggaatct cctgaaggag cgcaaagcag
     2401 accgtgtggt cctcttcagc acgcagttca tggatgaagc tgacattctg gctgacagga
     2461 aagtgttcat ctccaggggg aagctgaagt gtgcaggctc atctctcttc ctgaagaaga
     2521 aatggggcgt tgggtatcac ttaagtttgc agctgaagga agtctgtgtt ccggagaaca
     2581 tcacatcact ggtgaaacag cacatccctg aggccaagct gtcagctgaa agggagagga
     2641 cacttgtcta tacattaccc ttagaaacaa cctatagatt tccagaactt tgccagagtc
     2701 ttgacagctg tcctggactg ggaattgata gctatggtgt ttccatgacg actttgaatg
     2761 aggtgttcct gaagctagaa ggaaaatcag caattgaaga accagaggtt gacatagtgg
     2821 gagaaggaca aacagagaga tctggggaca cagagagact catggagatg gagcagactc
     2881 tctctacact tacggagacg aagaagaaga caggcagctt ggctctctgg agacagcaaa
     2941 cctgtgcaat cgcaaaggct cgcttgttga agttaaagca tgaaaggaaa acacttctct
     3001 ctgtgctctt ggttctggga gttgcccttt gccctcttct tttcgaaagt atcaagatga
     3061 aaatacttca gagcgcttac acttgggatc tttccccaca ctcgtacttc cttgcccctg
     3121 gacaacagcc ccacggcatg ctcactcagt tactgatcat caataagaca gaggcaagca
     3181 ttgatgactt tatccagtct gtggagcgcc agaacatagc tttggaagtc gatgcttccg
     3241 gagccagaga tggcacggat gacccatcct tcaacggagc ccttacagtg tctggcggtg
     3301 agaagaacca cagcttttca ctggcatgca ataccaagag attgaactgt ttcccagttc
     3361 tgatggacgt cctaagcaat gggttactgg gaatggttaa accatcagcc cgcatccgaa
     3421 ccgacagaag cacctacttc gtggatgaaa ttactaatcc tttacaacag ctggggaaga
     3481 ccacgttctg gctgactctg acctcggctt gccctcctta tatagccatg agcagcgtca
     3541 cagactataa gaacaaagtg tggttccagc tgcgggtctc cggcctcttc ccttccgctt
     3601 actggttcgg gcaggcactg gtggatattc cgctctactg cttcgtcttc ctcttcatgt
     3661 ctttaatgga ctacctctta ggcttcccag atgccacgct tattgttata actcacgttc
     3721 tacaaatccc gtgttctgtc ggctatgcca tatccctgat cttcttaaca tacgtgattt
     3781 ccttcatttc tcgcaagggg aaaaaaaaca gcggcatttg gtcactttgc ttctatatca
     3841 tcaccatgtt ctcggtggtt gcaatgttgc tggatttcaa tgtggatgct atactgtact
     3901 gcatcatctt tttactaccg ccgtccactc tgattggatg tctgatctta tctatgcatc
     3961 ttttcatata tcggatctct cgtgaagaat caattgtaga gccatttctg gtattcctca
     4021 ttcctttact tcatgttttc atttttattt ttacccttcg atgtctggaa tggaagtttg
     4081 gaaagaaaac aatgaggaag gatcccattt ttagaatctc tccaagaaac aatgatgtgc
     4141 atcaaaaccc agaagagcca gaaggtgagg atgaagatgt tcaaatggag agaatgagaa
     4201 cagcgagtgc cttggcatcc accagttttg atgagaagcc agtcattgtt gccagctgcc
     4261 tacgcaaaga gtacgcaggg aaatggaaac attgcctttc taagaagaag gctaagatag
     4321 ccaccaggaa tgtctcattc tgtgtcagga aaggtgagat tctaggattg ctgggacaca
     4381 atggagctgg caaaagtaca tctcttaaaa tgataagtgg agacacaaaa tccacagctg
     4441 ggcaggtgct actgaaaggg agcagagaag gggacgccct ggggttcctg gggtactgtc
     4501 ctcaagagaa cgctctgtgg cccaacctca ctgtgaagga gcacctggag gtatttgcta
     4561 cagtgttggg cctgagcaaa agtcacgctg cagtcaccat tacaaggttg gcagatgcgc
     4621 tccagctgca ggaccagctg aagtctccgg tgaagacact gtcagaggga gtgaagagaa
     4681 agctgtgttt tgtgctgagc atcctgggaa acccttctat attgcttctg gatgagcctt
     4741 caactgggct ggatcctgaa gggcaacagc aaatatggca agcaatcagg gccatcataa
     4801 aaaatacaga caggggcgcc cttctcacca cccattacat ggcagaggct gaggctctgt
     4861 gtgaccgcgt ggccattctg gtgtctggaa ggttgaggtg tattggatca atccaacatc
     4921 tcaaaagcaa attcggcaaa gattacctgc tggagatgaa ggtgaagact ctcgagcagg
     4981 tggagctcct caacacagag gtcctaaggc ttttccccca ggctgctagg caggaaaggt
     5041 actctcctct catggtttac aaattaccag tggaagatgt gcaaccttta tcccaagcgt
     5101 tcttcaagtt agagaaggtt aagcagactt ttgacttgga agagtatagc ctctctcagt
     5161 ctaccttgga gcaggtcttc ttagagctct ccaaggagca agagatggat ggctttgagg
     5221 aagaactaga ctcctctata aaatggaagc tcctcccaca ggaagaggtt taagccaaaa
     5281 atatttcctg ttcctttgtc agactgtgtt gtttcttaaa gacatctatt tttatataag
     5341 atcaatgaaa tatttaagcc cctatattat aaacaccatg atagttcttc agggattgga
     5401 gaaaaggggt aagtgctgga tagaggctga accatatccc tttagagcac ttgatgccat
     5461 agttctgtag aatgatgaat aaacagttac tttta
//
