LOCUS       XM_006247654            5572 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus ATP binding cassette subfamily A
            member 6 (Abca6), transcript variant X1, mRNA.
ACCESSION   XM_006247654
VERSION     XM_006247654.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051345.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006247654.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006247654.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5572
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5572
                     /gene="Abca6"
                     /note="ATP binding cassette subfamily A member 6; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 8 ESTs, 9 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 4 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:303639"
                     /db_xref="RGD:1308998"
     CDS             46..4938
                     /gene="Abca6"
                     /codon_start=1
                     /product="ATP-binding cassette sub-family A member 6
                     isoform X1"
                     /protein_id="XP_006247716.1"
                     /db_xref="GeneID:303639"
                     /db_xref="RGD:1308998"
                     /translation="MSGMGSMKELSVRQQTRVLLHKNLLKKWRMKRESLLEWSIPVVI
                     GLYMGLFSYFKENNQVPEVPPQDLGSIDEFNGSSIMVVYTPISNVTQQIMNKTITAPT
                     MKGTRIVGVPSEKDLDEMLLDHVPRAFGIVFNDTFFYKLKVYLMYGNPFLKEDLLAHC
                     WDTYPHVFCSLTRYWKRGFVALQTAINAAIIEVTTKHPVMEELMSVNAFNMKTLPFIS
                     KDIFQYEIFILFCLLYFSSFIYFASRSVTKERKHSKEFMKVMGLQDSAFWLSWGLIYV
                     GFIFIFSVFIAVIITSTRIIVMTGFLVIFTLFFLYGLSVIAVTFLMAVLLQKAIITNL
                     FVFLFNLFWGCVGFTVLHKELPSSLEWVLSICSPFAFTSGMTKIIFLEYNLNGVVFPD
                     PSGESYVMIAVFFILAFDGLLYLVLALYFDKILPCGADRRAAPLFFLNPVSCFRKRTS
                     RNKVTERDIDPELPSDEYFEPVDPEYQGKEAIRIRNIRKEYKGKSGKVEALKGLFFDV
                     YESQITAVLGHGGAGKSSLLNILNGLSVPTSGLATVYNKNLSEMQDLKEIRKMIGVCP
                     QHNVQFDALTVKENLTLFANIKGIVPQSVAQEVQQILSELDMQTIQDELAEHLSEGQK
                     RKLTFGVAILGDPRILLLDEPTAGLDPFSRQRVWGFLKERRADRVILFSTQFTDEADI
                     LADRKVILSNGALKCTGSSVFLKRKWGLGYHLSLFMNETCDSEQLTSFINHHIPGAKL
                     KAKTKEKLVYTLPLEKTSKFPEFFSDLDKYSGQGLMNYEVSMSTLNEVFMNLEGEPST
                     TQDFEKGETLTDSDSLNEMEVAPPSLSKAQKTMSAMSLWRMQVCAIARLRVLKLRRER
                     KAFLTFLPLLGISLIPLITEYMANALIEVKTNWEFKTDLYFLSPGQLPQGLRTSLLVI
                     NNTESNIEDFVQSLKHQNIVLEVDDFENRNATESLSYNGAIIVSGRQKDYRFSAVCNT
                     KRLHCFPILMNVISNGILRMLNHTQHIRLEEDVLSSGIVVVWFGILEASLSILFIVCS
                     VSPHIAMSSISDFKKKADSQLWISGLYPSAYWCGQALVDITLLSGILLTGYITLYTTK
                     LMHIYLTGEIVLSIVLLAFGCAASLVFLTYVISFVFGKKRKNSGLWSICFFIVITIMF
                     DTVLMDPFNEALLISAMMLVPSFSLNALLIVLEMRAYQYYREFGESKYGLSGVDLLLC
                     LIPYFHTLLFIFVLRCLELKYGKNVVRKDPLFRIAPQSLHVQPNPEEPVDEDEDVQAE
                     RMRTSDALSTVNLDEKPAIIASCLHKEYTGQKKWCCSKRRKKIAVRNISFCVNKGEIL
                     GLLGPEGAGKSSSLRMIAGIMKPTAGEVELKELSSAVAHQGEGHGAAKLGYCPQENVL
                     WPILTVKEHLEVYAAVKGLRKKDAVIAISRLVNAFKLHDQLNVQARNLVVGLTRKLCF
                     ALSILGNSPVLILDEPSTGLDVSGKQQMWQAIQAAVKDNKKGVLLSTHDLAEAEALCD
                     RAAIMVSGRLRLIGSIQHLKRRFGKDYILELRVKEISQEPLVHKEILRLFPQAARQDR
                     CFSLLTYKLPVTDVHPLSQAFHKLEAVKRGFNLDDYSLSQCTLDRVFLELSKEQELGD
                     VHEEADITMRWKLLPPSDEL"
ORIGIN      
        1 gtttccggcg cctcccagat ccacagtgca acgagaatgg agtagatgtc aggtatgggg
       61 agtatgaagg agttgagtgt gcgtcagcag acccgagtgc ttctgcacaa gaatctgctc
      121 aagaaatggc ggatgaagag agagagccta ttggagtgga gcataccggt tgttatagga
      181 ctgtatatgg gtctgttttc ctatttcaaa gaaaacaatc aggtcccgga agtccctcct
      241 caggatcttg gaagcataga tgaattcaat ggctcttcta taatggttgt atatactcca
      301 atctctaatg taacccaaca aataatgaac aaaaccataa ctgctccaac tatgaaagga
      361 acaagaattg tcggggtacc aagtgaaaag gacttggatg aaatgcttct ggatcatgtg
      421 ccacgagctt ttggaatcgt atttaatgac actttctttt acaagttaaa agtgtatcta
      481 atgtatggaa atccatttct gaaagaggac ctactagctc attgctggga tacatatcct
      541 cacgttttct gttcactgac cagatactgg aaaagaggat ttgtggcctt acaaactgcc
      601 attaacgcgg ccattataga agtcacaaca aagcaccctg tgatggagga gttaatgtcc
      661 gtcaacgcgt tcaatatgaa gaccttacct tttatttcta aagacatttt tcaatatgaa
      721 atttttatct tgttctgctt gctctatttc tcctcgttca tctattttgc gtcacgcagc
      781 gttactaaag agagaaagca ctctaaggag ttcatgaaag taatgggtct acaagactct
      841 gcattctggc tgtcctgggg cttaatctat gttggcttca tctttatttt ttctgtattc
      901 atcgccgtta tcataacatc tacccggatc atagtgatga ctggtttcct cgtcatattt
      961 acactgttct tcttgtatgg actatccgtg atagctgtaa ctttcctgat ggctgttctg
     1021 ttacagaaag cgatcatcac caacctattt gtatttctct ttaacctctt ttgggggtgt
     1081 gtggggttca cggtgctgca caaagagctc ccctcatctc tggaatgggt cctgagcatc
     1141 tgtagccctt ttgccttcac atccgggatg accaagatta tcttcctgga gtacaacttg
     1201 aatggtgtcg tatttcctga cccttccgga gaatcatatg taatgatagc agtatttttc
     1261 atattggctt ttgatggtct tctctacttg gttttggcct tgtattttga caaaatcttg
     1321 ccctgtgggg ctgatcgccg ggccgctcca ctgtttttct tgaatccggt gtcttgtttt
     1381 cgaaaaagga ccagtagaaa caaggtcact gagagagaca tagaccccga gcttccttcg
     1441 gatgagtatt ttgagcccgt ggatccagaa taccaaggga aagaagccat cagaataaga
     1501 aatattagaa aggaatataa agggaagtct gggaaagtgg aggctttgaa aggcttgttc
     1561 ttcgatgtct atgagagtca aatcacagca gttctgggcc atggtggagc aggcaaatct
     1621 tcattgctaa acatcctcaa tggactgtct gttccaactt cagggttagc cacggtgtac
     1681 aataaaaatc tctctgagat gcaagacttg aaggaaatca gaaagatgat tggtgtttgt
     1741 cctcaacata atgtgcaatt tgatgcgctc actgtgaagg agaaccttac cctcttcgct
     1801 aatataaaag ggatcgttcc gcagagcgta gcgcaagagg tacaacaaat cctgtcggag
     1861 ttggacatgc agacgatcca ggatgaactg gctgaacatt taagtgaagg acagaaaaga
     1921 aagctcacct ttggcgtggc cattctagga gaccctcgca ttttgctctt agatgaacct
     1981 actgcgggac tcgatccctt ctcaaggcag cgagtgtggg gtttcctgaa ggaacgcagg
     2041 gcggaccgcg tgatcctctt cagtacgcag ttcaccgacg aggcagacat ccttgctgac
     2101 aggaaagtga tcctctccaa cggggctctc aagtgtacag ggtcttccgt cttcctgaag
     2161 agaaagtggg gtcttggata tcacttaagt ttgttcatga atgaaacgtg cgattcagag
     2221 cagttaacat ccttcatcaa tcaccacatc cccggtgcta aactaaaagc aaaaaccaaa
     2281 gaaaagcttg tgtacacttt gccactggaa aagacaagca agttcccaga gttcttcagt
     2341 gatctcgata aatattctgg ccagggcttg atgaattatg aagtctccat gtcaactctg
     2401 aatgaagtct tcatgaacct ggaaggagaa ccaagtacca cacaggactt tgagaaaggg
     2461 gagaccctca cagactctga cagcttaaat gaaatggagg tggctccccc ttccctctct
     2521 aaagcccaga agaccatgag cgctatgagc ctgtggagaa tgcaggtctg tgccatagca
     2581 cggcttcgcg tcctaaaact acggcgagag aggaaagcat ttctaacctt tctaccgctt
     2641 cttggaattt cattgatccc actgattacg gaatacatgg ctaatgcttt gatagaggta
     2701 aaaaccaact gggaatttaa aacagacttg tatttcctgt ctcccggaca actccctcag
     2761 ggcctgcgaa ccagtctatt ggtcatcaat aacacagagt caaatattga agatttcgtg
     2821 cagtcgctga agcatcaaaa catagttttg gaagtagatg actttgagaa cagaaacgcc
     2881 actgagagcc tttcctacaa cggagccatt atagtttccg gaagacaaaa ggactacaga
     2941 ttttcagctg tgtgtaacac caagaggcta cactgctttc ccatattgat gaatgttatc
     3001 agcaatggaa tccttcgcat gctcaatcat acacagcaca tcaggcttga ggaagatgta
     3061 ctctcatcag gcatcgtggt ggtctggttt gggatactgg aagcttccct gtccattctg
     3121 tttattgtgt gcagtgtttc tccacatatc gccatgagta gcatcagtga ttttaaaaag
     3181 aaagctgact cccagctgtg gatttctggc ctctaccctt ctgcctactg gtgtgggcag
     3241 gcgctcgtgg acattactct tctcagtgga attcttctca cgggctacat cacgttatac
     3301 acgacaaaac tgatgcacat ctacttgaca ggcgaaatcg tgctgtctat agtccttctc
     3361 gcttttggct gtgcagcttc tcttgtcttc ttgacgtacg tgatatcatt tgtttttggc
     3421 aaaaagagga aaaacagcgg cctctggtca atttgcttct ttattgtcat aacgattatg
     3481 tttgacacgg ttttgatgga tcccttcaat gaggcactgc ttatttctgc catgatgtta
     3541 gttccttcct tttcattgaa tgcgctcctg attgtcttgg aaatgagagc ctaccagtac
     3601 tatcgagaat ttggagaaag caaatatggt ttatcggggg ttgatcttct cttatgccta
     3661 ataccttact tccatacttt gctgttcatt tttgttctga gatgcctgga actgaagtat
     3721 gggaagaatg tagtacggaa ggaccccctc ttcaggatag ctccgcagag tctacatgtt
     3781 cagccaaacc cagaggagcc cgtagacgaa gacgaagacg ttcaagcaga aagaatgagg
     3841 acatctgatg ccctgagcac cgtgaattta gatgagaaac cggccataat cgccagctgt
     3901 ctgcacaaag agtacacagg tcagaagaaa tggtgttgtt caaagaggag aaagaaaata
     3961 gcagtgagga acatctcttt ctgcgttaat aaaggtgaaa ttttgggatt gttaggaccc
     4021 gagggcgctg gtaaaagttc ctctctcagg atgatagctg gcatcatgaa gccgacagct
     4081 ggagaggtgg aactgaaaga gttaagctca gctgtggctc accagggcga gggccatggt
     4141 gcagccaagc tcggatactg ccctcaggag aacgtactgt ggcccatcct gaccgtgaag
     4201 gaacacctgg aggtgtacgc cgctgtgaag gggctgagga agaaggatgc tgtcattgcc
     4261 atttcaagat tagtgaatgc tttcaaacta cacgaccagc tgaatgtcca agcgcggaac
     4321 ctagttgtgg ggttgactag aaagctgtgc ttcgcgctga gcatcctggg aaactcacct
     4381 gtcctgattc tggatgaacc atctacaggc ttagatgtgt cagggaagca acaaatgtgg
     4441 caggcaatcc aggcagccgt taaagacaac aagaagggtg tcctcttgtc tacccatgac
     4501 ctggctgagg cagaggctct gtgtgaccga gcggccatca tggtgtctgg aaggctgaga
     4561 ctcatcggtt caatccaaca cctcaagagg agatttggca aggattacat tctagaactc
     4621 agagtgaagg aaatttctca agagccatta gttcacaagg agattctgag gctgttcccc
     4681 caggctgcac gccaggacag gtgcttctcc ttgctcacct acaagcttcc cgtgacagat
     4741 gttcatcctc tgtctcaggc ctttcacaaa ctggaagcag tgaagcgtgg ctttaacctg
     4801 gacgactaca gcctctctca gtgcacattg gacagagtat ttttagagct ttcgaaggaa
     4861 caggagctgg gagatgttca tgaagaagct gatataacca tgagatggaa actcctccct
     4921 ccctcagatg aactgtaaag tctcaggcct aatcattctg ttatcccacc aacttctttt
     4981 atacagtaac gaacagaatg aatagtttca aagatgtttt catgtcaaca ttacacatat
     5041 tttatttgct caatcaacat caagttaaaa tttacaatta ttcatgtctc aaaacttaaa
     5101 ggctatataa ggaaatacaa actactagga acatgaaatc acccagaatc aggcctccgg
     5161 ctactgtaga gacaaaacta caaaactgaa ttttaaatag aaattaattt atcacgatta
     5221 tcagaaactt cactttcaaa aacatatgag gaatgttcct cttctgtcct acatgggctc
     5281 ctgcacatat atgtgcacag acatacactc atgtatagat aaaatacaca ggttttgaaa
     5341 agaatatctg tataatggaa aaaatgtaaa aattaaataa aacttaacaa aagagaccct
     5401 atagttcctt catataaaaa ttcaattgtt tgctttcttt aatccatttt ttgtagagtt
     5461 gttaccatat acagtatatg tatttcccaa cgatctactt atatttactg ttataacatt
     5521 ggaatttttt tgctttcaaa cttaaagttg aaactatata tttgcattta aa
//
