LOCUS       XM_039101179            5822 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus ATP-binding cassette, subfamily A
            (ABC1), member 16 (Abca16), transcript variant X1, mRNA.
ACCESSION   XM_039101179
VERSION     XM_039101179.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039101179.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5822
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5822
                     /gene="Abca16"
                     /note="ATP-binding cassette, subfamily A (ABC1), member
                     16; Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 1 EST, 2 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     3 samples with support for all annotated introns"
                     /db_xref="GeneID:293444"
                     /db_xref="RGD:1563534"
     CDS             284..5326
                     /gene="Abca16"
                     /codon_start=1
                     /product="ATP-binding cassette sub-family A member 3-like
                     isoform X1"
                     /protein_id="XP_038957107.1"
                     /db_xref="GeneID:293444"
                     /db_xref="RGD:1563534"
                     /translation="MNQLLLNQLTVLLWKNFTLKKRQVLSTVMEVLAALLFVIMLLIF
                     RALTDMNIAGPYHFTPQPIATMPSFIKDAQEWELIYIPSEIDVVTEIIEDVKRNLNIT
                     IKVRGFPSEVEFEEYILFDYTSQKVLAAIVFDCDFKNKTDPLPLQVKYHLRFVGAQRT
                     IWWPDKIGWKTRLLFPNHPSLKPRNPNYLDGGSPGYIKEGFLAVQHAVDKSIMLYHES
                     RAGKELFENIDTLVQRFPYPSHPQDKLLWISSPFIPLMFILMFSSIVLSIMRSIVFEK
                     EKRLKEYQLIMGLRNWIIWMGYFFTFFPLYVAIIFLICILLFIQIVEEPILRYSDCSF
                     IFVFLTCYAIASICFAFMVSTFFSKTRLAASAGNLLFFASFFPYNFISEYYGMLDLTT
                     KITACLSANVALALGINILIKLEIQEIGVKWDNLWTPANLEDNLNFGYMLGMLLLDAF
                     LYSLVTWYVEAVFPGQCGVPQPWYFFIMRSYWFGKPKIRKIGEEAKSIPVVHNCYEAE
                     PSNLEAGIQIKHLHKEFKTKPAINNLSLNIYEGQVTVLLGHNGAGKTTTLSVLTGRFA
                     ATRGEAYINGYNISDNMAEIRKDLGFCPQHDLLFDDLTLSEHLFFYCMIKGHPQNINC
                     VEINRMLSVFNLQENYHTLSGSVSGGVRRKLSIILALMGGSKVVILDEPSSGMDPMSR
                     RATWDILQHYKQNRTILLTTHYMDEADVLGDRIAIMVRGTLHCCGSSVFLKQIYGAGY
                     HIVLEKEPYCDVDNIIAMIQQHVPGSMLENDIGNELSFILPKKYVSRFETLFTELEMR
                     QKALGIANFGASITTMEEVFLKVNKLAAPQRSIQTIQPYYLTYKKMRQDEQQNVNILR
                     NYNKPIFPYLREIATVKFNTGVPLYRQQFYSMFIKRALFIGRNWKLMFLQIIVVLVVT
                     TYLLLSLHLDDNDIPERELNLSHYGKTIVPYSISGNSDLALNLIKNLKIFLKSKNQSL
                     KKIKGDMNNYILENKDCRTFCIIALSIKVERNKTVLTIFFNNEAYHSPAISLSILDNI
                     LFMTLSGRDASITAFNKPQPLPHYGSNTVPVNGLQIVQCLAFGISVVVGSFSIQTVTE
                     RISQAKHIQFLTGVCVLTYWLSALLCDLIFFFFACCVLLGIFRFCQLEAFVVHYNFLD
                     TILIFMLYGWCVVPLTYLGSFLFNSSTAAYIKITLFNYFSTMFSIIIYTIVQFYGEDF
                     PALIHILIKTILMALPSYNLAMSISKYFDDYEVKRLCAREFRSIYMDCSEPFIQNNVY
                     GFGEHGIGKFLITLATMGLVFLLLLLSLESVSSSLKNFVFRNVLFYFYNKIRKGRHGV
                     HSKSTKEDEDEDIRKEKRKVFTLLLRLQNTPLVLNEVTKIYFKCPVVKAVKNISLVVR
                     KSECFGLLGLNGAGKTTTFKMLTGEETITSGIAFIDGNSVTKNPRKIRSRIGYCPQSE
                     SVLNHMTGRESLIMYARLWGVPEQDINEYVEAFLHSVHLEPIADQIIYTYSAGSKRRL
                     STAIALMGKSSVVFLDEPSTGMDPVAQHLLWDTVTWVCKTGKAIIITSHRMEECEALC
                     SRLAIMVKGKFTCLGTPQHVRKRFGQVYTLTVKINIAKDEEKVKEFKDFIKSTFPGNI
                     KFQEFHGTIGYYIPSTEICWGKVFEILEEAKVLFKLEDYSVKQVTLEQIFLTFANTDK
                     MKTYREIKLQEA"
ORIGIN      
        1 ctccgctcct gtcccggtga ggctgggcag ttgatccggt gttgagcgga agtgcaactc
       61 agggaagaca cgagccaagc cgtgattcag tggaggaagc aggggctgtg gaggcggttg
      121 ctgccgagtg gtaacttacc attgtaaaaa caagaaaaaa aaggaaggaa ggaaagaaga
      181 aagaaagaaa gaaagaaaga aagaaagaaa gaaagaaaga aagaaaggaa ggaagaaaga
      241 accctttcat cctttagagt tgagcacaca gtttggtaaa aggatgaatc agttgttact
      301 caatcaatta acagttctcc tctggaaaaa ttttacatta aagaagaggc aggtccttag
      361 tacagtaatg gaagtcttgg cagcattgtt gtttgtaata atgttgttga tattccgtgc
      421 acttactgat atgaatattg ctggaccgta tcatttcact cctcaaccca ttgctaccat
      481 gccttctttc atcaaagatg cccaggaatg ggaattgatt tacatacctt ctgaaattga
      541 tgtggtaaca gaaatcattg aggatgtaaa gaggaatctc aacatcacta taaaagttcg
      601 agggtttcct tcagaagttg agtttgagga gtacattctg ttcgattata cgtctcagaa
      661 agtactggct gccattgttt ttgactgtga tttcaaaaac aaaactgatc ctctgccact
      721 tcaggtaaaa tatcacttgc gttttgttgg tgcacagagg accatatggt ggccagacaa
      781 gataggctgg aaaacgagac ttctctttcc aaatcatcct tctctaaaac ccaggaatcc
      841 aaattatctt gacggaggaa gtcctgggta catcaaggag ggattcctgg cagtgcagca
      901 tgccgtggac aagagcatca tgctgtatca tgaaagccgt gctgggaaag agctctttga
      961 aaacattgac actctggtac agaggtttcc atacccaagt catccccagg acaaactact
     1021 ttggatctcc agtcccttca tcccactaat gttcatactc atgttctctt ccatcgttct
     1081 ttccatcatg cgatccattg tgtttgaaaa ggagaaaagg ttaaaggagt accagctcat
     1141 aatggggctt agaaattgga tcatctggat gggctatttc ttcacgttct tccctttata
     1201 tgtcgccatt atctttttga tatgtatatt actctttatc cagatcgtgg aggagccaat
     1261 cttgcgctac agcgactgca gcttcatctt cgtcttcctt acatgctatg ccattgcatc
     1321 catatgcttt gcctttatgg ttagcacgtt cttcagtaaa actcgtttgg ctgcttctgc
     1381 tggaaacctc ctattttttg ccagtttctt tccctataac ttcatctctg aatactatgg
     1441 aatgttggac cttactacca agataactgc gtgtctgagt gcaaatgttg ctttggcact
     1501 ggggattaat atcttaatca agttggaaat acaagagatt ggtgttaaat gggacaacct
     1561 ttggacacca gccaatcttg aggataatct caactttggc tatatgcttg gaatgctttt
     1621 gcttgatgct ttcttataca gccttgttac ctggtatgta gaagctgtct ttcctggaca
     1681 gtgtggtgtg cctcaaccat ggtacttttt cattatgcgc tcatattggt ttggcaaacc
     1741 aaaaatcaga aagattggag aagaagcaaa gtctatccct gtagtacata actgttatga
     1801 agctgaacct tccaacctgg aggcaggaat ccagatcaag catttgcaca aggaatttaa
     1861 aactaaacct gcaataaaca acttgtcact gaacatctat gaggggcaag tcactgttct
     1921 tctgggacac aatggggcag gaaagaccac aaccttgtct gttctcacag gtcgttttgc
     1981 tgctaccaga ggagaggcct atattaatgg gtataatatt tcagataaca tggctgaaat
     2041 tagaaaagac ttgggcttct gccctcaaca cgacctattg tttgatgatt tgacactatc
     2101 agaacatctt tttttctact gtatgataaa aggacaccct caaaacataa attgtgtgga
     2161 aattaaccgt atgctgtctg tttttaacct gcaagaaaac taccatacat tatcaggctc
     2221 agtgagtgga ggagtgaggc gcaaactctc catcatttta gcacttatgg ggggctccaa
     2281 ggtagtgata cttgacgaac catcatctgg catggaccca atgtcaagga gggccacctg
     2341 ggatatcctt cagcattata aacagaatcg gaccatctta ctgaccaccc actacatgga
     2401 tgaagctgac gtcctgggtg accgcattgc catcatggtc agggggacct tgcactgctg
     2461 tggctcttca gtattcctga aacaaatata tggtgctgga tatcacatag tcctggagaa
     2521 ggaaccatac tgtgatgttg ataatattat tgcaatgatt cagcaacatg ttccaggttc
     2581 tatgttggaa aatgacatag gaaatgaatt atcatttatc ctacccaaaa agtatgtatc
     2641 aagatttgaa actttgttta cagagttgga aatgagacaa aaagcactag gcattgccaa
     2701 ctttggagct tcaatcacta caatggaaga ggttttcctt aaggtcaata agctggcagc
     2761 tcctcaaagg agtattcaga ctatccaacc ctattacttg acatacaaaa agatgagaca
     2821 agatgagcag cagaatgtga atattctcag aaattataac aaaccaattt ttccctattt
     2881 gagggaaatt gctactgtta aatttaacac tggggttcca ctttaccgcc agcaatttta
     2941 ttccatgttt ataaaaagag cactattcat tggccgcaac tggaagttga tgtttctaca
     3001 gataatagta gttttggttg tcactacata tctcttatta tctctgcatt tagatgataa
     3061 tgatatacct gaaagggaac tgaatttgag tcactatggt aaaaccattg tgccttactc
     3121 aatttcagga aattctgatt tagctctgaa tctcataaaa aacctgaaga tttttctaaa
     3181 gtcaaagaat caaagcttaa aaaaaataaa aggtgatatg aacaattaca tattagaaaa
     3241 taaagattgc cgaaccttct gcattattgc actttctatt aaagttgaga gaaacaaaac
     3301 agtgctcacc attttcttca ataatgaggc ataccactca cctgcaatat ccctgtcaat
     3361 attagacaac attcttttta tgacactttc tggccgtgat gcttccatta ctgcctttaa
     3421 taagcctcag cctctccctc attatggttc aaacacagtg cctgtaaatg gattacaaat
     3481 agtacagtgt ttagctttcg gcatttctgt ggtggtcggg tcctttagta tccagacagt
     3541 gactgaaaga atcagtcaag ccaagcacat ccagtttctg actggggtct gtgtgcttac
     3601 ttactggctc tctgccttgt tgtgtgacct catcttcttc ttctttgcct gctgtgtact
     3661 gctgggcata ttcagattct gccagctgga ggcatttgtt gtgcattaca acttcctgga
     3721 cacaattctg atttttatgc tgtatggctg gtgtgttgtt cctctcactt atcttggaag
     3781 ctttctgttc aacagtagca ctgctgccta catcaaaatc acgctcttta actacttttc
     3841 aactatgttc agtatcatca tttacactat tgtgcaattt tatggtgaag actttcctgc
     3901 ccttatccac atcctcataa agacaatttt aatggcactg cctagttaca atcttgcaat
     3961 gagtatcagc aagtattttg atgactatga ggtaaaacga ctgtgtgcta gggaattcag
     4021 aagcatttac atggattgca gtgagccatt cattcagaac aacgtgtatg gctttggaga
     4081 gcatgggatt ggaaaatttc tgatcacact ggctaccatg ggcttggttt ttctcctctt
     4141 gctcttatcc ctggagtctg tttccagtag cctgaagaac tttgtctttc gaaacgttct
     4201 cttttatttc tacaataaga tcagaaaagg caggcatggt gtacactcta agagtaccaa
     4261 agaagatgag gatgaagaca taagaaaaga aaaaagaaaa gtctttacac tgctgctcag
     4321 gttacagaac accccattgg tccttaatga agttacaaag atttatttta agtgtcctgt
     4381 tgtcaaggct gtgaaaaata tctcccttgt agtcaggaag tcagagtgct ttggactgct
     4441 tggactaaac ggagctggaa aaactactac attcaaaatg ctgaccggag aagagactat
     4501 cacctctgga attgcgttta ttgatggcaa tagtgtcact aaaaatccaa gaaagattag
     4561 gtcaagaatt ggttactgtc ctcagtctga atctgtgctg aaccacatga caggccggga
     4621 atcgttgatc atgtatgcta ggttgtgggg ggtcccagag caagacatca atgagtatgt
     4681 ggaagccttt ctgcattcag tgcacctgga acccattgct gaccagatta tctacacata
     4741 cagtgccgga agcaaacgta ggctaagcac tgccatcgcc ctaatgggaa agtcttcagt
     4801 tgtcttcctg gatgaaccat ctactggcat ggacccagta gctcagcatc tgctctggga
     4861 cacagttaca tgggtttgta agactggtaa agctatcatc ataacttccc acagaatgga
     4921 agaatgtgag gccctctgtt ctagactggc catcatggtt aaagggaaat ttacatgcct
     4981 aggcaccccc cagcatgtca gaaagaggtt tggtcaagta tacactctaa cagtaaagat
     5041 caatattgct aaggatgaag aaaaagtaaa agagttcaaa gatttcatta aatcaacttt
     5101 tccaggtaac atcaaattcc aggaatttca tgggactatt ggctactata ttccaagcac
     5161 agaaatctgc tggggaaagg tatttgagat tttggaggaa gctaaagtgc tgttcaaatt
     5221 agaagactat tctgtcaaac aagtaaccct ggaacaaatc tttctgacct ttgctaatac
     5281 tgataaaatg aaaacttatc gggaaataaa gctacaggaa gcttgaaatc caatcagtga
     5341 ccctctttct cagactgctg cctgcaccaa atacataaaa gtcttgtgat atacgtctac
     5401 agataaaaac tctgatggag agagtttgca gtctttgaaa gctacagtga attatcagtt
     5461 acctgaacta tgaagattcg ttttgcttta aattgaaaag ttagtgcttt attctctttc
     5521 tgcctcccat acacagctcc aaaactctct tcaaatctta gtcatgaact gagcaaaact
     5581 cttagctctg acgctcacca gcttctttat ctcaggtctt tacttatttt ctctcaactt
     5641 caggtttcct gtgtttacca gaattgacac tttctacctt taagagttca gagaatgaag
     5701 tatggtcatt tagaaaaagt atattaacca gtagaaagta agctattgtt tttgtttagt
     5761 actattgtat tgtttttatt taatttattt acttttcaat ttttttcctc catcttaatc
     5821 aa
//
