LOCUS       NM_001106293            5326 bp    mRNA    linear   ROD 29-MAR-2024
DEFINITION  Rattus norvegicus ATP-binding cassette, subfamily A (ABC1), member
            15 (Abca15), mRNA.
ACCESSION   NM_001106293 XM_001075753 XM_219276
VERSION     NM_001106293.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 5326)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            On Oct 30, 2010 this sequence version replaced NM_001106293.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMEA5760383,
                              SAMEA5760389 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-140               JAXUCZ010000001.1  184118017-184118156
            141-221             JAXUCZ010000001.1  184122495-184122575
            222-486             JAXUCZ010000001.1  184122939-184123203
            487-614             JAXUCZ010000001.1  184125087-184125214
            615-765             JAXUCZ010000001.1  184127393-184127543
            766-1025            JAXUCZ010000001.1  184139856-184140115
            1026-1142           JAXUCZ010000001.1  184140451-184140567
            1143-1260           JAXUCZ010000001.1  184141071-184141188
            1261-1434           JAXUCZ010000001.1  184145148-184145321
            1435-1613           JAXUCZ010000001.1  184145914-184146092
            1614-1748           JAXUCZ010000001.1  184155557-184155691
            1749-1878           JAXUCZ010000001.1  184158486-184158615
            1879-2033           JAXUCZ010000001.1  184166926-184167080
            2034-2189           JAXUCZ010000001.1  184169794-184169949
            2190-2400           JAXUCZ010000001.1  184170270-184170480
            2401-2551           JAXUCZ010000001.1  184181521-184181671
            2552-2650           JAXUCZ010000001.1  184186659-184186757
            2651-2804           JAXUCZ010000001.1  184187020-184187173
            2805-3096           JAXUCZ010000001.1  184188230-184188521
            3097-3343           JAXUCZ010000001.1  184191440-184191686
            3344-3548           JAXUCZ010000001.1  184191827-184192031
            3549-3765           JAXUCZ010000001.1  184193708-184193924
            3766-3939           JAXUCZ010000001.1  184198529-184198702
            3940-4118           JAXUCZ010000001.1  184208086-184208264
            4119-4244           JAXUCZ010000001.1  184210397-184210522
            4245-4439           JAXUCZ010000001.1  184210754-184210948
            4440-4627           JAXUCZ010000001.1  184215283-184215470
            4628-4798           JAXUCZ010000001.1  184216496-184216666
            4799-4980           JAXUCZ010000001.1  184217684-184217865
            4981-5054           JAXUCZ010000001.1  184223446-184223519
            5055-5326           JAXUCZ010000001.1  184223901-184224172
FEATURES             Location/Qualifiers
     source          1..5326
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q36"
     gene            1..5326
                     /gene="Abca15"
                     /note="ATP-binding cassette, subfamily A (ABC1), member
                     15"
                     /db_xref="GeneID:293442"
                     /db_xref="RGD:1305981"
     exon            1..140
                     /gene="Abca15"
                     /inference="alignment:Splign:2.1.0"
     exon            141..221
                     /gene="Abca15"
                     /inference="alignment:Splign:2.1.0"
     CDS             162..5168
                     /gene="Abca15"
                     /codon_start=1
                     /product="ATP-binding cassette, sub-family A (ABC1),
                     member 15"
                     /protein_id="NP_001099763.2"
                     /db_xref="GeneID:293442"
                     /db_xref="RGD:1305981"
                     /translation="MASPASKKLLLLLWKNFTLKRRKFGALVTEIILMLAFSIVLLTT
                     RHLLSINKMESLHFPDQPVGAVPFFFRVSANSSRPWELAYVPSNITVVHNIVENVKKD
                     LNFPMAVIGFPSESDFEDYARSSVNSRNILAAIVFDHNFANSRDPLPKKIKYNLRFSD
                     IKKNIHGMAYYQGHTWLTKFLFPPLRIVGPRNPQEADGGSPGYITEGFLAVQHALDKA
                     IMLHHGGAAATALFNDVSLFIQRFPYPAYYHDHFYLFANTFVPLTVASIFFLNHLILV
                     WSIVWEKENRLKEYQLMIGLRNWMFWIAYFFTFFCLYFINIIFMCIVLFVKIDPAPIF
                     QYNDPILVFILLLFYAISSIFFSFMISTLFNRVSFAVSLGSFLFFLTYLPAITMNQSF
                     EHMPPRQKLIWSFDFNVGMAFGFRFLVNAETRKTGMKWNNIFLPTDSDSLLFTYVLGM
                     LLVDAFIYGLVAWYIEAVFPGEYGVPKPWNFFLMHSYWFGESRQQKPEITQFCKRVES
                     KYFEVEPTDLTAGIQIKHLHKVFQENNITKVAINDLSLNVYEGQITVLLGHNGAGKST
                     TLSILSGLYPPTSGEAYVHGEDISQHMDQIRNFLGLCPQQNLLFDHLTVSEHLYFYCR
                     VKGVPQNMCLEETNNMLSAFNLTEKRDAFSKSLSGGMKRKLAIIIALIGGSKVVILDE
                     PTSGMDPASRRSTWDVVQTYKQNRTILLTTHYMDEADMLGDRIAIMVQGTLRCCGSSV
                     FLKRLYGVGSHIVMVKEPVCDVDEISKLIHYYIPTATLKTNVGNELSFILPKEYTHKF
                     EALLTALEENQENLGISSFGMSITTMEEVFLRVSKMEDSKPDMEATQSPSAGSKGNRN
                     RDVESSMRAGFPTQSEDQTIVFNTGCPLYLQQFHAMFMKRLMYNWRNWRVLSVQILGL
                     VISTFLLLKSHEFRHKRIRQMNLDDYGQTIVPFSILGKSNLTTSLLIHLENMLKPGNH
                     QLKEVQGDLLKYLEGNEECIHLCIVALSIKVAAGRAKLTVLFNNEAYHSPSLSLAVLD
                     NILFMSLSGANASITVFHKPQPRPTSKEWPRSTYGKIVAFKIQLGMALLVSGFCILTV
                     TERITKAKHMQFLSGASVLVYWLSALVFDFIIFFISCCFLLVMFKYYKIDIYVTDYHI
                     LETMLILILFGWSAIPLTYLMSFLFSKSIPAYIQLLVFYYLSGTSGLLIDTIIEAGLS
                     TIISNSTQTFLLSSLLFFPTYNLGKCISEYTVIYQRKILCIQQKNVLKYLNCSKEYTK
                     KNIYSLKKPMIGKYLIAMSIAGFVYLLFIFFWENISWKLRMLIHQHIYFGVCKKYKSD
                     IISNELSGTSEDNDVENERREILYQPEKFLNCPVLIKQLTKIYFKSPLILAVKNISLA
                     IQERECFGLLGFNGAGKTTTFQILTGEITPTAGDVFIDGISITKDVLKVRSKIGYCPQ
                     FDALLEYLTGWEIMVMYARIWGISERQIRPYVNTYLNSLELEPHANSLISTYSEGNKR
                     RLSTAIAMMGKPSVIFLDEPSTGMDPRARRLLWDAVIKIRESGKAIIITSHSMEECEA
                     LCTRLSIMVHGKLTCLGSPQYLKNKFGDIYILKTKVKSGETLKEFKNFITLTFPGSEL
                     KQENQGILNYYIPSKDNSWGKVFGILEKAKEQYDLEDYSISQITLDQVFLAFADQDRK
                     "
     exon            222..486
                     /gene="Abca15"
                     /inference="alignment:Splign:2.1.0"
     exon            487..614
                     /gene="Abca15"
                     /inference="alignment:Splign:2.1.0"
     exon            615..765
                     /gene="Abca15"
                     /inference="alignment:Splign:2.1.0"
     exon            766..1025
                     /gene="Abca15"
                     /inference="alignment:Splign:2.1.0"
     exon            1026..1142
                     /gene="Abca15"
                     /inference="alignment:Splign:2.1.0"
     exon            1143..1260
                     /gene="Abca15"
                     /inference="alignment:Splign:2.1.0"
     exon            1261..1434
                     /gene="Abca15"
                     /inference="alignment:Splign:2.1.0"
     exon            1435..1613
                     /gene="Abca15"
                     /inference="alignment:Splign:2.1.0"
     exon            1614..1748
                     /gene="Abca15"
                     /inference="alignment:Splign:2.1.0"
     exon            1749..1878
                     /gene="Abca15"
                     /inference="alignment:Splign:2.1.0"
     exon            1879..2033
                     /gene="Abca15"
                     /inference="alignment:Splign:2.1.0"
     exon            2034..2189
                     /gene="Abca15"
                     /inference="alignment:Splign:2.1.0"
     exon            2190..2400
                     /gene="Abca15"
                     /inference="alignment:Splign:2.1.0"
     exon            2401..2551
                     /gene="Abca15"
                     /inference="alignment:Splign:2.1.0"
     exon            2552..2650
                     /gene="Abca15"
                     /inference="alignment:Splign:2.1.0"
     exon            2651..2804
                     /gene="Abca15"
                     /inference="alignment:Splign:2.1.0"
     exon            2805..3096
                     /gene="Abca15"
                     /inference="alignment:Splign:2.1.0"
     exon            3097..3343
                     /gene="Abca15"
                     /inference="alignment:Splign:2.1.0"
     exon            3344..3548
                     /gene="Abca15"
                     /inference="alignment:Splign:2.1.0"
     exon            3549..3765
                     /gene="Abca15"
                     /inference="alignment:Splign:2.1.0"
     exon            3766..3939
                     /gene="Abca15"
                     /inference="alignment:Splign:2.1.0"
     exon            3940..4118
                     /gene="Abca15"
                     /inference="alignment:Splign:2.1.0"
     exon            4119..4244
                     /gene="Abca15"
                     /inference="alignment:Splign:2.1.0"
     exon            4245..4439
                     /gene="Abca15"
                     /inference="alignment:Splign:2.1.0"
     exon            4440..4627
                     /gene="Abca15"
                     /inference="alignment:Splign:2.1.0"
     exon            4628..4798
                     /gene="Abca15"
                     /inference="alignment:Splign:2.1.0"
     exon            4799..4980
                     /gene="Abca15"
                     /inference="alignment:Splign:2.1.0"
     exon            4981..5054
                     /gene="Abca15"
                     /inference="alignment:Splign:2.1.0"
     exon            5055..5326
                     /gene="Abca15"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggaagaaaga gcgctgccct gcaagacggt tagctaaggc cttgcttgtg tgcaggaaga
       61 gcttccagaa ctgggcagtc tgatgctctc cagtggataa ggcgctagtg gtttaaggtt
      121 gcgaaattgg agcagtagtg agttgaactc tgttcaaaac aatggcttca ccagcatcaa
      181 aaaaactttt gctccttctg tggaagaact ttactttaaa gaggcggaag tttggggctt
      241 tagttactga gataatcctg atgcttgcgt tcagcattgt gcttttgaca acacgccacc
      301 ttcttagcat aaacaagatg gagtccctgc attttcctga ccaacctgtc ggtgctgttc
      361 ctttcttctt ccgagtctct gccaacagtt ctcgtccttg ggagctggct tatgtgcctt
      421 ccaacatcac ggtggtacac aatattgtcg aaaatgtgaa aaaggattta aacttcccta
      481 tggcagttat agggtttcct tcagaaagtg attttgaaga ttacgctagg tcatctgtca
      541 actctagaaa tattctggct gctattgtgt ttgaccacaa cttcgcaaac agtagagacc
      601 ctctgccaaa gaagataaaa tacaatctgc gatttagtga tattaaaaag aacatacatg
      661 gtatggcata ttatcaaggg cacacctggc ttacaaaatt tctctttcca cctttgcgta
      721 ttgtgggacc cagaaatcca caggaagcag atggaggcag tcctgggtac attactgaag
      781 gattcctggc tgtgcaacat gccctagaca aggccatcat gctccaccat ggtggagctg
      841 ctgcaacggc actcttcaat gatgttagcc ttttcattca gagatttcca taccctgcat
      901 attatcatga tcacttctat ttgtttgcta atacttttgt ccctctaaca gtggcaagta
      961 tcttcttttt gaatcatctt atcttagttt ggtccattgt gtgggaaaag gaaaaccgat
     1021 taaaggaata ccagctcatg ataggactga gaaactggat gttctggatt gcctatttct
     1081 tcaccttctt ctgtttgtat tttattaaca ttatatttat gtgcattgtt ttatttgtca
     1141 agattgatcc tgcgccaata ttccaataca atgacccaat ccttgtcttc atccttttgt
     1201 tattttatgc catctcctcg atattcttca gttttatgat tagcacattg tttaatagag
     1261 tcagttttgc tgtgagcttg ggaagtttcc tttttttcct cacctactta ccagctatta
     1321 caatgaatca aagctttgag cacatgccac ccaggcagaa gctgatttgg tccttcgact
     1381 tcaatgttgg gatggcattt ggatttagat tcctagtcaa tgcagaaaca aggaaaactg
     1441 gaatgaaatg gaataacata ttcctaccaa cggattcaga cagcctttta tttacctatg
     1501 tgctaggaat gcttttagtt gatgctttca tatatggcct tgtggcctgg tacatagaag
     1561 ctgtctttcc aggagagtac ggtgtgccaa agccgtggaa ctttttcttg atgcactctt
     1621 actggtttgg agaatcacgt caacaaaaac ccgaaataac ccaattttgt aagagagttg
     1681 aaagcaagta ttttgaagtt gaaccaactg atttgacagc aggcatccag atcaaacacc
     1741 tacacaaggt attccaagag aataacatca ctaaagtcgc catcaatgac ttgtctttga
     1801 acgtatatga gggacagatt actgttcttt taggacataa tggggcagga aagtccacta
     1861 ctctgtccat cctctcaggt ctctatcccc cgaccagtgg agaggcctat gttcatggag
     1921 aagacatctc acagcatatg gatcaaatta ggaatttctt gggcttatgt cctcagcaga
     1981 acctgttgtt tgatcacttg acagtatcag aacaccttta tttctactgc agggtaaaag
     2041 gagtgcctca aaatatgtgt cttgaggaaa ctaacaatat gctgtcagct tttaacctga
     2101 cagaaaagcg tgatgcattt tcaaagtcat tgagtggagg catgaagcgc aaactcgcca
     2161 tcataatagc cctgataggg ggctccaagg tggtgatact tgatgagcca acatctggca
     2221 tggacccagc ctcaaggaga agcacctggg atgtcgttca aacttataaa cagaatcgta
     2281 ccatcctgct gaccacccac tacatggatg aagctgatat gctgggtgat cgcattgcta
     2341 tcatggtcca gggaaccttg cgatgctgcg gatcctctgt cttcctgaaa agactatatg
     2401 gtgttggaag ccacatagtc atggtgaagg aacctgtctg tgacgttgat gaaatctcaa
     2461 aactgatcca ttactacata ccaacagcca ccctgaagac taatgttgga aatgagttat
     2521 cttttattct acccaaagaa tatacacaca agtttgaagc tctcttgact gctctggaag
     2581 agaaccaaga aaaccttggc atctctagct ttggtatgtc tatcactacc atggaagaag
     2641 tcttccttag ggtcagtaaa atggaagact caaaaccaga tatggaagct acccagtcgc
     2701 cctctgcagg aagcaaaggg aacaggaata gagatgttga aagtagcatg agagcaggct
     2761 ttcccaccca gagtgaagac cagaccattg tgtttaacac tgggtgtccc ctctacctgc
     2821 agcagttcca tgcaatgttc atgaagaggc tgatgtacaa ttggcgaaac tggagggtgc
     2881 tttcagtgca gatactgggg cttgtcattt ctactttctt actcctcaag tctcatgagt
     2941 ttagacataa gagaatcagg caaatgaatt tggatgacta tggtcaaacc attgtgcctt
     3001 tttctatttt ggggaaatct aatttgacaa caagtctctt aatacacctt gagaatatgc
     3061 taaaacctgg caaccaccag ctcaaggaag tacaaggaga cctcctcaag tacttggagg
     3121 ggaatgaaga atgcatccat ttatgtattg ttgcactttc catcaaggta gctgcaggta
     3181 gagcgaagct taccgttctg ttcaacaacg aagcctacca ttcgccatct ctgtccctgg
     3241 cagttttaga caacattctc ttcatgtcac tttctggtgc caatgcttcc ataacagtct
     3301 tccataaacc tcagccacga cccaccagca aagagtggcc acggagtacc tatgggaaga
     3361 ttgtggcctt caaaattcag ctgggcatgg ctcttctggt cagtggcttt tgcatcctca
     3421 cggtgactga gcgaatcacc aaggcaaagc acatgcagtt tctgagtggg gcttctgtcc
     3481 ttgtgtactg gctttcagct ctggtgtttg actttattat cttcttcatt tcttgctgct
     3541 tcctattggt tatgttcaaa tactacaaaa ttgacatcta tgtcactgac taccacattt
     3601 tggaaacgat gctgatcctc atactgtttg gatggtctgc catccccctc acatacctga
     3661 tgagcttcct gttttctaaa agcatccctg cctacatcca acttctggtg ttctattatc
     3721 tctctggcac ttctggtctc ttgatagata ccataataga agccggatta tcaaccatca
     3781 tatccaactc cacccaaact ttcctgctca gttcgctgct gttctttccc acgtacaacc
     3841 ttgggaagtg catcagtgag tacactgtta tttaccagag gaaaatacta tgcatccagc
     3901 aaaagaatgt tctcaaatac ctgaattgta gcaaggaata caccaagaag aacatttatt
     3961 ctttgaagaa gcctatgatt ggaaagtatt taattgccat gagcatcgct ggctttgttt
     4021 accttctctt cattttcttt tgggaaaata tctcatggaa attaaggatg ctcatccacc
     4081 aacacattta ctttggtgtc tgcaagaaat acaagtcgga tataatttcc aatgaattat
     4141 ctgggacttc tgaagataat gatgtagaaa acgagagaag agagatcctg taccagcctg
     4201 aaaagttcct gaattgccca gttctcatta agcagctcac aaagatatac tttaagtctc
     4261 cactaattct ggctgtgaaa aatatctccc ttgctatcca agagagggag tgctttggat
     4321 tacttggatt caatggagca ggtaaaacaa ctacctttca aattttgact ggagaaatta
     4381 ctcctaccgc cggggatgtg ttcattgatg gcattagcat cacaaaggat gtcctaaagg
     4441 tcaggtcaaa aattggctat tgtcctcaat ttgatgcttt gctggaatac ctgaccggct
     4501 gggaaataat ggtcatgtat gcaagaatat ggggaatctc agagcgtcag attcggccct
     4561 atgtgaacac gtacttgaat tccttggaac tggagcctca tgccaacagt ctcatcagca
     4621 cctacagtga aggaaacaaa cgtaggctga gcactgccat tgccatgatg ggaaagccct
     4681 cggttatctt cctggatgaa ccatcaactg gcatggaccc aagagctagg cgccttctct
     4741 gggacgcagt gataaagatt cgtgaaagtg gaaaggccat cattataaca tcccacagca
     4801 tggaagaatg tgaagcgctt tgtacaaggc tatccataat ggtgcatggg aagctcacct
     4861 gcctgggtag ccctcagtac ctcaagaaca agtttggtga tatttatatt ctgaagacca
     4921 aggtcaagtc tggggaaaca ttaaaggaat ttaaaaattt catcacactg acatttccag
     4981 gtagtgaatt aaagcaagag aatcaaggga tccttaatta ttacattccc agcaaggaca
     5041 acagctgggg aaaggtgttt ggcattttgg agaaagcgaa ggaacaatac gatttagaag
     5101 actattccat cagtcagatc accctggacc aagtcttcct ggcttttgct gaccaagata
     5161 ggaagtgatc atgagacaga agttccttga gattcagtta caaatagtga tactgacttt
     5221 tcttttttct tttctttttt ttttaaccta gagctgggta catggggagg tcatcctgtg
     5281 cttgtgaatc ttcatgtaaa tatatttgtg taataaatac ttccct
//
