LOCUS       XM_039101170            5613 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus ATP-binding cassette, subfamily A
            (ABC1), member 14 (Abca14), transcript variant X1, mRNA.
ACCESSION   XM_039101170
VERSION     XM_039101170.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039101170.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5613
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5613
                     /gene="Abca14"
                     /note="ATP-binding cassette, subfamily A (ABC1), member
                     14; Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 1 EST, 4 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     3 samples with support for all annotated introns"
                     /db_xref="GeneID:365362"
                     /db_xref="RGD:1561491"
     CDS             395..5470
                     /gene="Abca14"
                     /codon_start=1
                     /product="ATP-binding cassette sub-family A member 3
                     isoform X1"
                     /protein_id="XP_038957098.1"
                     /db_xref="GeneID:365362"
                     /db_xref="RGD:1561491"
                     /translation="MCHRASTLSGKMDSLLMRQFLVLLWKNFLLKSRKVFGLVVEIIL
                     IFLLFVWTLTVRRISKKKFIPAMIFNPIPLTLPGFLNQNFDYELAYVPSDSNAARNIT
                     EMVKKDLNFNFKVQGFSSEESFEKYIKYEDKAEHVLAAIVFDHKFKTSNEPLPLQVKY
                     SLRFGRMYDPENVLKPSERQKETEWNTSILFPSVPSLGPRNVLENDGGNPGYIREGFL
                     LVQHSVDKAIMMHHSGRAAEAMFANTTIYARRFPYPAFIHDNFLWTFIVMFPWTILFT
                     FTQMALDIIGTIMLEKEKRLKEYQLMVGLSNAMLWVSYFITFLLMYFIIICLLCGILF
                     LKITHERVFQHSDPLFIAFYFLCFAISSMLLGFMISTFFNRASLATSIAGFLHFLTFF
                     PYLIVFSLYDQTSLSGKLALCLITNTALAFGTDLICKLEMKGHGAQWYNFATKVNPDD
                     DLTLAHIIGMFLFSAFLYGLVAWYVDAVFPGKYGVPKPWNFFLQKTYWFGEPALSREE
                     SQVSDLPPSDFMEPEPVDLEAGIQIQHLYKEFTLKNSTLMAVKDLSLNLYEGQITVLL
                     GHNGAGKTTTLSILTGLYLPTKGKVYISGYDISSDMVQVRKSLGLCPQDDLLFPLLTV
                     SEHLYFYCVIKGISSTNRPREIHRMLTSFGLLQKSNTMSKDLSGGMKRKLSIIIALIG
                     DTKVVILDEPTSGMDPVSRRAIWDLLQHYKKDRTILLTTHHMDEADVLGDRIAILVMG
                     VLKCCGSSLFLKKLYGVGYHLVIVKTPDSDDGKISQLIKNYIPTAEMETNVAAELSFI
                     LPKEHTHRFAELFTDLEERQEELGISGFGVSMTTMDEVFFKVSNLADLKLNTEIAQSA
                     STVNPSTSENNENMNVPRNFERSGYSGRYSDSSFNAGWPLYMQQFRAMFIKRVMFSWR
                     NWKLLLLQLLALQGLTYVLIKGIGFSVPKEPARVMDLEQYGETTVPFSVSGDPPLTQK
                     LTKNLEIMLKDKKQKVHEVQGGVQDYLLTNKDCIYSCIVAFSLDVTRKEKTFTFWFNN
                     EAYHASPLSLSILDNIIFKYLSGPDATITVSNKPQPQPFTKGRSEERSASGIQIVFNL
                     LFGMSIFTSGFCLMTVTERVSKAKHIQFVSGVYTLNFWLSALLWDLIIHFVACVLLLL
                     VFLYTDVHILLENYNFLDTMLILMLFGWSIIPFIYLLSFWYNNSTNAYIKIFVFNHCL
                     GFMSIIVDAVVELIPDIKTSTKNLILNSLLLLPIYNFGMSIFKYYSIQEIRKLCSSLG
                     SLNTFSGCQHELTVYSMDKRAIGRHVTAMAATGLIYFLFIILLETTSWNLKAFIYRYV
                     LFGIYKIFYKARMSKELSGDSEDEDVQNERETILQHSWHSLNSTVLIKKLIKIYFKIP
                     PTLAVRNISLTIQKEECFGLLGLNGAGKTTTFKILTGEEIATSGDVFIEGYSITRNIL
                     KVRSKIGYCPQFDALLDYMTSREILTMYARVWGIPENNIRSYVNNLLKMLYLKPQAEK
                     FIYTLSGGNKRRLSTAIAIMGNSSVVFLDEPSTGMDPLARRMLWNAVIRTRESGKVII
                     ITSHSMEECEALCTRLAIMVQGKLVCLGSPQHLKNKFGNIYTMNIKFKTGTDDDVVQD
                     LKNYIAEVFPGSDLKQENQGILNYYIPSKDNSWGKVFGILEKAKEDYNLEDYSISQIT
                     LEQVFLTFANPDNTESGYEKAVP"
ORIGIN      
        1 gactgtctaa agcagtggtt ctcaacttgc ctagtgctgg gaccctttaa tacagttcct
       61 catgttgtga tgactcgcaa ccataaaatt attactactt cacaactata gttttgcgat
      121 tgttatgaat cataatgtaa acatatgtgt tcctgtgaaa gggtcgctga gaactgcttc
      181 tctaaagagt tagtgtccga gcagtgcatg ctgtggacac aaggcacatc aatctcaaag
      241 atggaggcgg gacacgtcta agggcagaag tccaccgccc tgggttttga aacagagctt
      301 agggctgaca aggatttgtt gcaggggttg actgcagttc actagaggag actgtgacgg
      361 tgacttccgt agcaagaggc agtgtgcgga gtgtatgtgc catcgagctt ccaccctctc
      421 tggtaaaatg gattcactgc tgatgaggca atttttagtc ctcctgtgga aaaacttcct
      481 cttaaagagc cggaaggtgt ttggcttagt ggtggagatc atcttgatat ttctgttgtt
      541 tgtatggact ttgaccgtac gcagaatttc aaagaagaaa tttattcctg ccatgatttt
      601 caatcctatt cccttgacat tacctgggtt ccttaatcag aactttgact atgaattggc
      661 ttacgtgcct tctgatagta atgcagcaag aaatattact gagatggtga aaaaggattt
      721 aaacttcaac tttaaagttc aaggtttttc ttcggaagaa tcttttgaga aatacattaa
      781 gtatgaagac aaggctgagc atgtgctggc tgctattgtg tttgatcaca agttcaaaac
      841 cagcaacgaa cccttgccgc ttcaggtaaa atatagtttg cgctttggtc gtatgtatga
      901 tccggaaaac gtgttaaagc catctgagag acagaaagaa acagagtgga atacatcaat
      961 tctcttccca tccgtgcctt ctctaggacc ccggaacgtc ttggaaaatg atgggggaaa
     1021 ccctggatat atcagagaag gatttcttct cgtgcagcat tccgtagaca aggccatcat
     1081 gatgcatcac agtggcagag cagccgaagc catgtttgct aacaccacaa tttatgcgag
     1141 gagattccca tacccagcct tcattcatga caacttcttg tggactttca ttgttatgtt
     1201 tccttggaca attttattta catttactca aatggcactt gacataattg ggacgattat
     1261 gttggaaaag gaaaagcgat taaaggaata ccagctcatg gtgggactca gtaatgctat
     1321 gctctgggtt tcctatttca tcaccttctt attgatgtat ttcatcatca tctgtttgct
     1381 gtgtgggatt ttatttctca agattacgca tgagagagtc tttcaacaca gtgacccgct
     1441 cttcatcgcc ttctacttcc tgtgttttgc catctcctcc atgttgctcg gcttcatgat
     1501 tagcacattc tttaacagag cttctctggc cacttctatt gcagggttcc ttcattttct
     1561 caccttcttt ccatatttga tcgtatttag tctgtatgat cagacaagcc tcagtgggaa
     1621 gctggctctc tgtctcatta ccaacaccgc actagcattt gggactgact tgatatgcaa
     1681 gctggaaatg aaggggcatg gtgctcagtg gtacaacttt gctacaaaag taaaccctga
     1741 cgatgactta accttggccc acataatagg aatgttttta tttagtgctt ttctgtacgg
     1801 ccttgtggcc tggtatgtag acgctgtctt tccagggaag tatggtgtgc ccaagccctg
     1861 gaactttttc ctgcagaaaa cctactggtt tggagagcca gccttaagca gggaagagag
     1921 ccaagtcagt gatttacctc caagtgattt tatggagccc gaacctgttg acttagaggc
     1981 tggcatccag attcagcatc tgtacaagga attcacctta aaaaacagta ccctgatggc
     2041 agtaaaagac ttgtctttga acttgtatga ggggcagata actgttcttc ttggacataa
     2101 tggggcagga aaaaccacca ccttgtccat tctcacaggt ttgtatcttc ctaccaaagg
     2161 aaaggtctat attagtggat acgacatctc atctgacatg gttcaagtta ggaaaagctt
     2221 gggcttgtgt ccccaggatg acctgttgtt cccactgctg acggtgtcag aacaccttta
     2281 tttctactgt gtgataaaag gaatatcttc gacgaaccga cctagagaaa tccacagaat
     2341 gctcacctct tttggcctgc tgcagaaaag taataccatg tcaaaggatc tgagcggagg
     2401 aatgaagcgc aagctctcaa tcattatagc tctaataggg gacactaagg tggtgatact
     2461 tgatgagcca acatctggca tggatccagt ctcaaggagg gccatctggg acctgcttca
     2521 gcattataaa aaggaccgta ccatcttact gaccacacac catatggatg aggctgatgt
     2581 gctgggggac cggattgcca tcctggtcat gggggtcctg aagtgctgcg gctcttcgct
     2641 tttcctgaag aaactatatg gagtggggta ccacctagtc atagtgaaga ctcctgacag
     2701 tgacgatgga aaaatctccc agctgattaa gaactacata ccaactgccg agatggagac
     2761 caatgttgca gctgagctgt cattcatcct gcccaaggag cacacacaca ggtttgcaga
     2821 acttttcaca gacctagaag aaagacaaga agagctcggc atctctggct ttggtgtctc
     2881 catgactacc atggacgagg ttttcttcaa ggtcagtaat ctggcagatt tgaagttgaa
     2941 cactgagatt gctcaatcag cttctacagt gaacccaagc acaagtgaaa acaacgagaa
     3001 tatgaatgtg cccagaaatt ttgaacgatc aggttactca ggaagatatt ctgattcttc
     3061 attcaatgcc gggtggcctc tttatatgca gcagttccgg gccatgttca tcaaaagggt
     3121 gatgttctct tggcgcaact ggaaactgct gctgctgcag ttgctggcac ttcagggtct
     3181 cacgtatgtt ctgataaaag gaataggctt ctcagtaccc aaagagcctg cccgggtgat
     3241 ggatttggag cagtacggcg agaccactgt ccctttctca gtttctggag atcctccttt
     3301 gacccagaaa ctcaccaaaa atctcgagat catgttgaaa gataaaaaac aaaaagttca
     3361 tgaagtgcaa ggtggtgtgc aggactactt gctcacaaac aaagactgca tttactcatg
     3421 catcgttgcc ttctcccttg atgttaccag aaaagaaaag acatttactt tttggtttaa
     3481 caatgaggca taccatgcat caccattatc tttatcgata ttagacaaca ttatttttaa
     3541 atatctctct ggccctgatg ccaccattac tgtctccaac aagcctcagc cccaaccttt
     3601 caccaaaggc agatctgaag aaagaagtgc atcaggaatc cagatagtct ttaacttgct
     3661 ttttgggatg agcattttca ccagtggctt ttgccttatg acagtgactg agagagttag
     3721 taaagcgaag cacatccagt ttgtgagtgg tgtctacacc ttgaattttt ggctctctgc
     3781 tctgctgtgg gatctcatca tccacttcgt tgcctgtgtc ctgttgctgc tggtgttcct
     3841 atacactgat gtgcatatac tgttggagaa ctacaacttc ctagacacaa tgctcatcct
     3901 tatgttgttt ggctggtcta tcatcccctt catctacctg ctaagcttct ggtacaacaa
     3961 tagcaccaat gcctacatca agatctttgt cttcaaccac tgtttagggt ttatgagcat
     4021 aattgtggat gctgtggtag aactgatacc agacattaaa actagtacta agaacctcat
     4081 acttaactca ctgctgctgt tacccattta taactttggg atgagtatct tcaaatacta
     4141 tagcatccag gagataagga aattatgttc ttctttggga tctcttaata ccttttcagg
     4201 ttgccaacat gaacttactg tatacagtat ggacaaaaga gcaattggaa ggcatgtgac
     4261 tgccatggcc gccacagggc tgatatactt cctcttcatt atccttctgg agactacttc
     4321 atggaatcta aaggccttca tatatcgata tgttttattt ggtatctata agatatttta
     4381 taaggctaga atgtccaagg agttatccgg agactcagaa gacgaagatg tacaaaatga
     4441 aagagagact atcctgcagc attcttggca ctcactgaat tctactgtgc tcattaaaaa
     4501 actcataaag atatatttta aaattccacc aactctggct gtgagaaata tctctctcac
     4561 cattcaaaag gaggaatgct ttggattact tgggttaaat ggagctggga aaactactac
     4621 ctttaaaatt ctgactggag aagagatagc tacctctggg gatgtgttca ttgaaggtta
     4681 cagcatcact agaaatatct tgaaggtaag gtccaaaatt ggctattgtc cacagtttga
     4741 tgccttgctg gattacatga cttctcggga gatattgaca atgtatgcca gggtgtgggg
     4801 gattccagag aacaatatta gatcctatgt gaacaacttg ttgaaaatgc tgtatctgaa
     4861 accacaggct gagaagttta tttacacttt gagtggagga aacaaacgta ggctgagcac
     4921 cgcgattgcc ataatgggaa actcctcagt tgtcttccta gatgagccgt ctactggcat
     4981 ggacccacta gcccggcgca tgctctggaa cgcagtgata aggacgagag agagtggcaa
     5041 ggtcatcatc atcacctctc acagcatgga agaatgtgaa gcgctctgta ccaggctagc
     5101 catcatggtg cagggaaagc tggtgtgcct gggcagccct cagcatctca agaacaaatt
     5161 tggcaatatt tacaccatga acatcaagtt caaaactggc accgatgacg acgtggtgca
     5221 ggatttaaaa aattacatcg ccgaggtttt cccaggtagt gacttaaagc aagagaatca
     5281 agggatcctt aattactaca ttcccagcaa ggacaacagc tggggaaagg tgttcggcat
     5341 tctggagaag gcgaaggagg actacaatct agaagactat tccatcagtc agatcaccct
     5401 ggagcaagtc ttcctgacct ttgccaaccc agataacaca gagagtggct atgagaaagc
     5461 agtgccttga gattcagtta caacaggaga ttatgacgtc ttcattcaaa tgcacttggg
     5521 ttcggagagg gatgtgtgtg tatgtatata taactttgtg taaatatatt tacattaaaa
     5581 atgtatcccc ttcattaaag acttagatga atc
//
