LOCUS       NM_001034109            3309 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus alanyl-tRNA synthetase domain containing 1
            (Aarsd1), mRNA.
ACCESSION   NM_001034109
VERSION     NM_001034109.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3309)
  AUTHORS   de Mateo,S., Castillo,J., Estanyol,J.M., Ballesca,J.L. and Oliva,R.
  TITLE     Proteomic characterization of the human sperm nucleus
  JOURNAL   Proteomics 11 (13), 2714-2726 (2011)
   PUBMED   21630459
REFERENCE   2  (bases 1 to 3309)
  AUTHORS   Nawaz,M.H., Merriman,E., Yang,X.L. and Schimmel,P.
  TITLE     p23H implicated as cis/trans regulator of AlaXp-directed editing
            for mammalian cell homeostasis
  JOURNAL   Proc Natl Acad Sci U S A 108 (7), 2723-2728 (2011)
   PUBMED   21285375
REFERENCE   3  (bases 1 to 3309)
  AUTHORS   Beebe,K., Mock,M., Merriman,E. and Schimmel,P.
  TITLE     Distinct domains of tRNA synthetase recognize the same base pair
  JOURNAL   Nature 451 (7174), 90-93 (2008)
   PUBMED   18172502
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000010.1.
            
            On Apr 21, 2023 this sequence version replaced NM_001034109.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC083790.1, FQ213285.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-52                JAXUCZ010000010.1  86853930-86853981   c
            53-184              JAXUCZ010000010.1  86853684-86853815   c
            185-344             JAXUCZ010000010.1  86850811-86850970   c
            345-402             JAXUCZ010000010.1  86848794-86848851   c
            403-559             JAXUCZ010000010.1  86847524-86847680   c
            560-676             JAXUCZ010000010.1  86847313-86847429   c
            677-807             JAXUCZ010000010.1  86846944-86847074   c
            808-874             JAXUCZ010000010.1  86846574-86846640   c
            875-966             JAXUCZ010000010.1  86846334-86846425   c
            967-1021            JAXUCZ010000010.1  86845885-86845939   c
            1022-1116           JAXUCZ010000010.1  86844949-86845043   c
            1117-3309           JAXUCZ010000010.1  86840874-86843066   c
FEATURES             Location/Qualifiers
     source          1..3309
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q31"
     gene            1..3309
                     /gene="Aarsd1"
                     /note="alanyl-tRNA synthetase domain containing 1"
                     /db_xref="GeneID:619440"
                     /db_xref="RGD:1561650"
     exon            1..52
                     /gene="Aarsd1"
                     /inference="alignment:Splign:2.1.0"
     CDS             14..1252
                     /gene="Aarsd1"
                     /note="alanyl-tRNA synthetase domain-containing protein 1"
                     /codon_start=1
                     /product="alanyl-tRNA editing protein Aarsd1"
                     /protein_id="NP_001029281.1"
                     /db_xref="GeneID:619440"
                     /db_xref="RGD:1561650"
                     /translation="MAFLCQRDSYAREFTTTVVSCCPAELQTDGNGSKKEVLSGFQVV
                     LEDTLLFPEGGGQPDDRGTINDISVLRVTRRGAQADHFTQTPLSPGSQVQVRVDWERR
                     FDHMQQHSGQHLITAVADLLFGLKTTSWELGKLRCVIELDSPSVTAEQVAAIEQSVNQ
                     KIRDRLPVSVRELSLDDPEVEQVRGRGLPDDHAGPIRVVTIEGVDSNMCCGTHVNNLS
                     DLQVIKILGTEKGKKNKSNLIFLAGNRVLKWMERSHGSEKALTSLLKCGAEDHVEAVK
                     KLQNATKLLQKNNLNLLRDLAVHTAHTLRSSPAWGGVVTLHRKEGDSEFMNIIANEIG
                     SEETLLFLTVGDEKGAGLFLLAGPTEAVETLGPRVAEVLEGKGAGKKGRFQGKATKMS
                     RRAEVQALLQDYVSTQSAEE"
     exon            53..184
                     /gene="Aarsd1"
                     /inference="alignment:Splign:2.1.0"
     exon            185..344
                     /gene="Aarsd1"
                     /inference="alignment:Splign:2.1.0"
     exon            345..402
                     /gene="Aarsd1"
                     /inference="alignment:Splign:2.1.0"
     exon            403..559
                     /gene="Aarsd1"
                     /inference="alignment:Splign:2.1.0"
     exon            560..676
                     /gene="Aarsd1"
                     /inference="alignment:Splign:2.1.0"
     exon            677..807
                     /gene="Aarsd1"
                     /inference="alignment:Splign:2.1.0"
     exon            808..874
                     /gene="Aarsd1"
                     /inference="alignment:Splign:2.1.0"
     exon            875..966
                     /gene="Aarsd1"
                     /inference="alignment:Splign:2.1.0"
     exon            967..1021
                     /gene="Aarsd1"
                     /inference="alignment:Splign:2.1.0"
     exon            1022..1116
                     /gene="Aarsd1"
                     /inference="alignment:Splign:2.1.0"
     exon            1117..3309
                     /gene="Aarsd1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ctagaagact gcgatggcgt tcctgtgtca gcgcgacagc tacgcacggg agttcaccac
       61 caccgtggtc tcttgctgtc ccgccgagct acagacggac gggaacggca gcaagaaaga
      121 agtgctgagc ggtttccaag tggttctgga agacaccctg cttttccccg agggtggggg
      181 ccagcctgat gaccgtggca ccatcaatga catctctgtg ctgagggtga cccgtcgtgg
      241 ggcccaggcc gatcacttca cgcagacacc tctgtcccct gggagtcagg tccaggtccg
      301 ggtggactgg gagcggaggt ttgaccacat gcagcagcat tcagggcaac atctcatcac
      361 cgctgttgct gaccttctct ttgggctgaa gacaacatca tgggaattag ggaaactccg
      421 gtgtgtgatc gagttggaca gcccttctgt gactgctgag caggtagctg ccatcgagca
      481 gagtgtcaat cagaaaatcc gagaccggct gcccgtgagt gtgcgagagc tgagcctcga
      541 tgaccctgag gtggagcagg tgaggggccg gggcttgccc gacgatcatg ctgggcccat
      601 tcgagttgtt accatcgagg gtgttgactc caacatgtgc tgtgggacgc acgtaaacaa
      661 tctcagtgac cttcaggtca ttaagattct gggcactgag aaagggaaaa agaacaaaag
      721 caacctgata tttctggctg ggaaccgggt actgaagtgg atggagcgaa gtcatggaag
      781 tgaaaaggcc ctgacctcac tacttaagtg tggagcagag gatcacgtgg aagccgtgaa
      841 aaaactccag aatgccacca agctcctgca gaagaacaac ctgaacctcc ttagagacct
      901 ggctgtgcac actgcccaca ccctcaggag cagcccagcc tggggaggcg tggtcacact
      961 acacaggaaa gagggtgact ctgaattcat gaatatcatc gccaatgaga ttgggtcaga
     1021 ggagaccctc ctgttcttaa ctgtggggga cgagaaaggt gctgggctct tcttactggc
     1081 aggcccgaca gaggctgtgg agaccctggg gcccagggta gctgaagtct tggaaggcaa
     1141 aggagcaggg aagaaaggcc gcttccaggg caaggccacc aagatgagtc gacgggcaga
     1201 ggtgcaggcg cttctgcagg actatgtcag cacacagagt gctgaggagt gaggggccaa
     1261 gatgccatcc ctgtgaccac agcacttgct tggatagtaa aatatcatga ctcaaatatg
     1321 actgcgtact gctgtgtatg ttactgtgca tgatccgaac actgcgttcc agtgctgagc
     1381 gattagcact gtgcatcgtt tctagcttgg ctccatcagg ttgcaccctc caggagtgga
     1441 cattaagtca atgaaagttg cggactgatc taggtcctgc ctaaggcttc atgctgtggt
     1501 atagttgctt atggctagtg caggactcga cccagggctt agtctatcca aatctccttg
     1561 ctttattttg tctggtttgt ttaaagatat atttattata tacacagtat tctgcatata
     1621 tatctgcgtg tcagagggta tcagatcccc attacagatg gttgttagcc accatgtggt
     1681 tgctgggaat tgaactcagg acctctggaa gagcagtcag tgctctcaac ctctgagcca
     1741 tctctccagc ctttttttat ttttttgagg cagtctttgt cacccaggct ggcctcacaa
     1801 tcataagtgt tgagattatg gacataggct tccggctttc atacctcagt gtatgtgtgt
     1861 acacatgtgt gaacatgtgt atggagacaa cagcagttgt cctcaaggta ccatcctgtt
     1921 actggtcttt ggctactttg tgggttcttc tttcttctac ccttctccac cccttttctt
     1981 taaccctttc aaccccttaa cactaagtag gagagaaaaa aggatagaga aggaagaaaa
     2041 aagctccctg aatcaaaagt caggggttgg aaagagagca gtgccatcac tagactactt
     2101 cctgctgatg aggagataga gttcctaggg caagtttgat ctttgcagtc tgggtatcta
     2161 atttcttctt ctttctcctt tgtgcacgac tgcttttttt taaaaaaaaa cttttttaga
     2221 tctatttatt tattacatac atagtgttct gcatatatat atgacagacg agggcaccag
     2281 atcttactat agatggctgt gagccaccat gtggttgctg ggaatcgaac tcaggacctc
     2341 tggaagagga gtcagtgctc ttaaccgctg agccatcttt ccagccctgt gcatgactgc
     2401 ttaacaaacc atgaccacca ccaacaatca cctgctgctc agggccctct aaagggaggg
     2461 gccccagaat ttcaaatgtc acacaattgc agaaactatg gagagcacaa ggcaaatcat
     2521 agtcagctgc tgcaaagtag acccatatct cacacttggg attaaaacaa aaacattctc
     2581 tcaatacttt ttctctctct ctctgtatgt gtgtgtttaa agattttatt ttatgtctac
     2641 aagtgctcta tctgcatgta tacctatgtg tcagaagagg gcatcagatc ccattacaga
     2701 tggttgtgag ccaccatatg gttgctgaga attgaactca ggacccctgg aggaacagtc
     2761 tgctcttaac cattgagcca tctctccagc cccaagcctg attttttttc acatgggtta
     2821 tcagaatcat gttacctcct catggcttca agacaacagc tttgtcaact gaaccatctt
     2881 cccagttctt cagtcctctt tgtgtatgat ctgcgtgtga atgcaggtat acatgtatgt
     2941 gttgtgtgta tggtgtgtgt gtgtgtgtgt gtgtgtgtgt gtccttctct gcctcttatc
     3001 tcaccatagg agtgctggga ttaaagatgc atgctgctgt gtcctacctg tttacctgtt
     3061 tgtttgtttg tttgtttgtt tgttttgttt tgagacagtt tctctgtgta gccctggctg
     3121 tactggatgg aactcactat gtaaaccaga ctggccttga attcagagat ccacctgcct
     3181 ctgccttctg agaggattaa agacgtgaac cagcacgacc tcgcgtggct ttttgtttgt
     3241 tttgtatttt tttgtctggt ttgttcagtt ggttggttta caatgtctta aataaataaa
     3301 atatatgta
//
