LOCUS       XM_006255583            3373 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus alanyl-tRNA synthetase 1 (Aars1),
            transcript variant X3, mRNA.
ACCESSION   XM_006255583
VERSION     XM_006255583.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051354.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006255583.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006255583.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3373
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="19"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3373
                     /gene="Aars1"
                     /gene_synonym="Aars"
                     /note="alanyl-tRNA synthetase 1; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 99 ESTs, 13 long SRA reads, 15 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 235 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:292023"
                     /db_xref="RGD:1304832"
     CDS             99..3005
                     /gene="Aars1"
                     /gene_synonym="Aars"
                     /codon_start=1
                     /product="alanine--tRNA ligase, cytoplasmic isoform X1"
                     /protein_id="XP_006255645.1"
                     /db_xref="GeneID:292023"
                     /db_xref="RGD:1304832"
                     /translation="MDSTLTAREIRERFINYFKRNEHTYVHSSATIPLDDPTLLFANA
                     GMNQFKPIFLNTVDPSHPMAKLSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLG
                     SWSFGDYFKELACKMALELLTQEFGIPVERLYVTYFGGDEAAGLEPDLECRQIWQNLG
                     LDEAKILPGNMKDNFWEMGDTGPCGPCSEIHYDRIGGRDAAHLVNQDDPNVLEIWNLV
                     FIQYNRESDGVLKPLPKKSIDTGMGLERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGA
                     RPYTGKVGAEDTDGIDMAYRVLADHARTITVALADGGRPDNTGRGYVLRRILRRAVRY
                     SHEKLNASRGFFATLVDVVVQSLGDAFPELKKDPDMVKDIINEEEVQFLKTLSRGRRI
                     LDRKIQSLGDCQTIPGDTAWLLYDTYGFPVDLTGLIAEEKGLVVDMDGFEEERKLAQL
                     KSQGKGAGGEDLIMLDIYAIEELRAKGLEATDDSPKYNYHSDSSGSYVFECTVATVLA
                     LRREKMFVDEVVTGQECGVVLDKTCFYAEQGGQIFDEGYLVKVDDSSEDKTEFTVKNA
                     QVRGGYVLHIGTIYGNLRVGDQVRLFIDEPRRRPVMSNHTATHILNFALRSVLGDADQ
                     KGSLVAPDRLRFDFTAKGAMSTEQIKKTEEIVNGMIEAAKPVYTLDCPLAAAKAIQGL
                     RAVFDETYPDPVRVVSIGVPVSELLDDPSGPAGSLTSVEFCGGTHLRNSSHAGAFVIV
                     TEEAIAKGIRRIVAVTGAEAQKALRKSETLKKSLSAMEVKVKAQSAPNKDVQKEIADL
                     GEVLATAVIPQWQKDEQRETLKSLKKVMDDLDRASKADVQKRVLEKTKQLIDSNPNQP
                     LVILEMESGASAKALNEALKLFKTHSPQTSAMLFTVDNEAGKITCLCQVPQNAANRGL
                     KASEWVQQVSGLMDGKGGGKDMSAQATGKNVGCLQEALQLATSFAQLRLGDVKN"
ORIGIN      
        1 ggtggtgagg tacgggtctg gcaccggttg tggcgggtgg gtatagctgt gtgtgcgcat
       61 ctgagggagc agttagttcc ctgaggagat tttcagagat ggactccact ctaacagcac
      121 gagagatccg agagcggttt ataaattatt tcaaacgaaa tgagcacacc tatgtccact
      181 cctccgccac catccctctg gacgacccca ccttgctctt cgccaacgca ggcatgaacc
      241 agttcaaacc catcttccta aacacagtag acccttctca ccccatggca aagctgagca
      301 gagctgccaa tacccagaag tgcatccgag ccgggggcaa acacaatgac ctggatgacg
      361 tgggcaaaga tgtctaccac cacaccttct ttgagatgct gggctcctgg tcttttgggg
      421 actattttaa ggaattggca tgtaagatgg ctctggaact tcttacccag gagtttggta
      481 ttccagttga aagactctat gttacttact ttggtgggga tgaggcagcc ggcctagagc
      541 cagatctgga gtgtagacag atctggcaaa atttaggact ggatgaagcc aaaattctcc
      601 ctggcaacat gaaggacaac ttctgggaga tgggtgacac gggcccctgt ggtccctgca
      661 gtgagatcca ctatgaccgc attggtggca gggacgctgc acaccttgtc aaccaggatg
      721 accccaatgt gctagagatc tggaatctcg tgttcatcca atataacagg gaatctgatg
      781 gtgttctgaa acctctcccc aagaaaagca ttgacacagg gatgggcctg gagagattgg
      841 tgtctgtgct gcagaacaag atgtccaact atgacactga ccttttcgtt ccttacttcg
      901 aagccattca gaagggtaca ggcgcccggc cgtatactgg gaaggttggt gctgaggaca
      961 ctgatggaat tgacatggcc tacagggttc tggctgacca cgcccggacc atcactgtgg
     1021 cgctggctga tggcgggcga cctgacaaca caggtcgggg gtatgtgctg agacggatcc
     1081 ttcgccgagc tgttcgctat tcccacgaga aactgaacgc cagcaggggt ttcttcgcca
     1141 cattagttga tgttgtcgtt caatccctgg gagacgcctt tcctgagctg aagaaggacc
     1201 cagatatggt gaaggacatc attaatgaag aagaggtaca gtttctcaag actctcagca
     1261 gagggcggcg catcctggac cggaaaattc agagcttagg agactgccaa accatcccag
     1321 gtgataccgc ttggctcctc tatgatactt acggattccc agtggatctc actggattga
     1381 ttgctgaaga gaagggcctg gtggtagata tggatggctt tgaagaagag aggaaactgg
     1441 cccagctgaa gtcacagggc aagggggcag ggggcgaaga cctcatcatg ctggacattt
     1501 atgcgattga agaactccgg gcaaagggtt tggaggccac agatgattct ccaaagtata
     1561 actaccattc agactccagt ggtagctatg tgtttgaatg tacagtggct accgtgcttg
     1621 ctctgcgtag ggaaaagatg tttgtggacg aggtggtcac tggccaggag tgcggagtgg
     1681 tgctggacaa gacctgtttc tatgccgagc aaggagggca gatcttcgat gaaggctact
     1741 tggtgaaggt cgacgacagc agtgaggata aaactgagtt tacagtgaag aatgctcagg
     1801 tccgaggcgg gtatgtgctg cacataggaa caatatatgg taacctgaga gtgggggatc
     1861 aagtccggct gttcattgac gagccccgac gaagacctgt catgagcaac catacagcta
     1921 cacacatcct gaacttcgcc ttgcgctcgg tgcttgggga tgcagaccag aaaggttcac
     1981 tggttgctcc tgaccgcctt cggtttgact tcactgccaa gggagccatg tccacggagc
     2041 aaatcaagaa gactgaggag attgtcaatg gcatgattga ggcagctaag cctgtctaca
     2101 ccctggattg tcccctggct gcagcaaaag ccatccaggg ccttcgagct gtatttgatg
     2161 agacctatcc tgaccctgtg cgagttgtct ccattggagt cccagtgtca gaactgctag
     2221 atgacccctc cgggcctgcc ggctccctta cttctgttga gttttgtgga ggaacacatc
     2281 tacggaattc tagccatgca ggagctttcg tgatagtgac tgaagaagcc attgccaagg
     2341 gtatccgcag gattgttgct gtcacaggtg ctgaagccca gaaggccctc aggaagtcag
     2401 aaaccttgaa gaaatctctc tcggccatgg aggtcaaagt gaaggcccag tctgcaccca
     2461 acaaggatgt gcagaaggaa attgctgacc ttggtgaggt cctggccact gcagtcattc
     2521 cccagtggca gaaagatgaa caacgggaga ctttgaaatc cctgaagaaa gtcatggatg
     2581 acctagaccg ggccagcaaa gccgatgtcc agaagcgagt gttagagaag actaagcagc
     2641 tgattgacag caaccccaac cagcctctgg tcatcctgga gatggagagc ggtgcatcgg
     2701 ccaaggccct gaatgaagct ttgaagcttt tcaagacaca ttctcctcag acatctgcaa
     2761 tgctcttcac agtagacaat gaggctggca agatcacatg cttgtgtcag gttcctcaga
     2821 atgcagccaa ccgggggcta aaagccagcg agtgggtcca gcaggtttca ggcctgatgg
     2881 atggtaaagg tggtgggaag gacatgtctg cccaggccac aggcaagaac gtgggctgcc
     2941 ttcaggaagc actgcagctg gctacttcct ttgcccagct ccgtctcgga gatgtaaaga
     3001 actgatggga gggaagccct ctcaggaaag catctccccg acaaccagtc atgttcaggt
     3061 gcaggagtct agccaggagc tctcctcctg ccacgaagac atttgagtct tgggaccttt
     3121 cagcagccct ccgtcctgat ccagcagtaa ctggaacgcg cctggagctg tcctgtgatt
     3181 cattgcccct ttccattctg ctctgagcca taatgtcagc gccatctgtc taaagtcact
     3241 acccaggaat gctacctaac atcctgatca cgtctagatg aggtcactct gccaacctga
     3301 ggcttctagg tctgcaagtg ggaaggaagc cttccactgc agaaaataaa ggaccatgtg
     3361 caatactaga tga
//
