LOCUS       NM_001106535            2648 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus AAR2 splicing factor (Aar2), mRNA.
ACCESSION   NM_001106535 XM_001067084 XM_215901
VERSION     NM_001106535.2
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2648)
  AUTHORS   Zhang,L., Li,X. and Zhao,R.
  TITLE     Structural analyses of the pre-mRNA splicing machinery
  JOURNAL   Protein Sci 22 (6), 677-692 (2013)
   PUBMED   23592432
  REMARK    Review article
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000003.1.
            
            On Nov 27, 2020 this sequence version replaced NM_001106535.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360194.2101035.1,
                                           SRR26360190.1448646.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760389, SAMEA5760475
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-335               JAXUCZ010000003.1  165517524-165517858
            336-1137            JAXUCZ010000003.1  165521183-165521984
            1138-1367           JAXUCZ010000003.1  165526002-165526231
            1368-2648           JAXUCZ010000003.1  165537701-165538981
FEATURES             Location/Qualifiers
     source          1..2648
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3q42"
     gene            1..2648
                     /gene="Aar2"
                     /gene_synonym="RGD1311066"
                     /note="AAR2 splicing factor"
                     /db_xref="GeneID:296312"
                     /db_xref="RGD:1311066"
     exon            1..335
                     /gene="Aar2"
                     /gene_synonym="RGD1311066"
                     /inference="alignment:Splign:2.1.0"
     exon            336..1137
                     /gene="Aar2"
                     /gene_synonym="RGD1311066"
                     /inference="alignment:Splign:2.1.0"
     CDS             381..1535
                     /gene="Aar2"
                     /gene_synonym="RGD1311066"
                     /note="AAR2 splicing factor homolog"
                     /codon_start=1
                     /product="protein AAR2 homolog"
                     /protein_id="NP_001100005.1"
                     /db_xref="GeneID:296312"
                     /db_xref="RGD:1311066"
                     /translation="MASMQMDPELAKQLFFEGATVVILNMPKGTEFGIDYNSWEVGPK
                     FRGVKMIPPGVHFLYYSSVDKANPREVGPRMGFFLSLKQRELTVLRWNAVQEEVDLSP
                     APEAEVEAMRANLPELDQFLGPYPYGTLKKWISLTNFISEATMEKLQPESRQICAFSD
                     VLPVLSMRYTKDRVEQNLPLCGTECRSYQEGLARLPEMKPRAGTEIRFSELPTQMFPA
                     GATPAEITRHSMDLSYALETVLSKQFPGNPQDVLGELQFAFVCFLLGNVYEAFEHWKR
                     LLNLLCRSETAMVKHHALYVSLISILYHQLGEIPADFFVDIVSQDNFLTSTLQVFFSS
                     ACSVAVEATLRKKAEKFQAHLTKKFRWDFTSEPEDCAPVVVELPENIETA"
     exon            1138..1367
                     /gene="Aar2"
                     /gene_synonym="RGD1311066"
                     /inference="alignment:Splign:2.1.0"
     exon            1368..2648
                     /gene="Aar2"
                     /gene_synonym="RGD1311066"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cacctatccg gctccaaagc agccgaactt ccgtccagtt tccgcggagc ccgaacgtga
       61 ggtaatacgg tgagtgtcag ctcttggtgc tcctttcgtc ctttggtttc gttaaatgtg
      121 atcgggtcac ctcgtttctt gtctcagaat cgcgccggcg gagtctgaat ttgtgatctg
      181 gtgtctcggg aggcctttat ttctgaaaac ccatctccag ggacaccatg gtcaggctct
      241 ctggggctca cgaagtaact tttcccccct tttaactgta gatcttggga accagagatc
      301 gtatactcac tggagctggt tctgcgtggc ttcctgagac aaaaaaagag tcctgctttt
      361 ggttaccctc cactggcctc atggcttcca tgcagatgga tcctgagtta gccaagcaac
      421 tcttctttga aggagccact gtggtcattc tgaacatgcc caaggggaca gagtttggca
      481 ttgactacaa ctcctgggag gtggggccca agttccgggg tgtgaagatg atcccccctg
      541 gtgtccactt cctttactac agctctgtgg acaaggccaa tcccagggag gtgggccctc
      601 ggatgggctt ctttcttagc ctgaagcagc gggagttgac agtcctgcgc tggaatgcag
      661 ttcaggaaga ggtagacctg tctccagctc cagaggctga agtagaagcc atgagagcca
      721 atctcccaga gctggaccag tttctgggac cttacccata tggtacactc aagaagtgga
      781 tctcactcac caacttcatc agtgaggcca ccatggagaa gctgcagcct gagagccggc
      841 agatctgcgc cttctcagat gtgcttcccg tgctttccat gaggtacacc aaggacaggg
      901 tggaacagaa cctaccgctc tgtggcaccg agtgcagaag ctaccaagag ggcttggccc
      961 ggctgcctga gatgaagccc agggcgggga cagagatccg cttctcagag ctgcccactc
     1021 agatgttccc agcaggtgcc acaccagcag agatcaccag gcacagcatg gacttgagct
     1081 atgccctcga gactgtgctc agcaagcagt tccctggcaa cccccaggat gtccttggtg
     1141 aactccagtt tgcctttgtg tgcttcctgc tgggcaatgt gtatgaggca tttgagcact
     1201 ggaagcggct cctgaacctc ctgtgtcggt ctgaaactgc catggtgaag caccacgccc
     1261 tgtacgtcag cctcatctcc atcctgtatc accagctcgg tgagatcccg gctgacttct
     1321 ttgtggacat tgtctcccag gacaacttcc tcaccagtac cttacaggtt ttcttttctt
     1381 ccgcctgcag tgttgctgtg gaagccaccc tgaggaagaa ggcagaaaag ttccaagccc
     1441 acctgactaa gaagttccgc tgggatttta cttcagagcc agaggactgc gccccagtgg
     1501 tggtggagct ccctgagaac atcgagactg cctaactgca aatcctcagg ccatgggaga
     1561 ccccttccct catggctatg acccaggctc tcccactcat ctgtcctaga atgccgcagc
     1621 agtgatccag tcaggtcctg caaagatgga cccagagcct gtgtgcacca gcaaatacat
     1681 tcctctacta cagaagtggc cactcgtggg tccctgtagc ctggccctgc cgccgaattt
     1741 cagggaaaaa aaaggggggg ggggctagat ggaacctgcc ctggcaacag tcttattcct
     1801 tctgacaatg agaaaatgaa cattaaattc agaagagcta ttccatagct actaaagaag
     1861 aaagaaacca gatccaccct ggggtctttg gtattaagtt agtgagtttt taagttaaat
     1921 gtaagtttaa agttgaatgt ggtttgtata gaatttctgc ctgctcctgg ttgaatggga
     1981 gaaacctgcc agaactcagg ccactgacct cttaggagct tagcctggga acgggtgaca
     2041 aggaagatgg tgggttgagt ctggcaggtg gccggcttca tctacacctc cttctgccag
     2101 aagcccagtg gttgatacct gaattggctg ccggctgtgg ggcctactgc tgctgtcact
     2161 attgtcctga ggcctcacac tgaagcggaa catggaagcc tcccacgtag ccccattttt
     2221 cactaaggct accatgactc ttgtgatgac atggaaatca acaacaaagg ggaggctctc
     2281 ctctgagcct gcttattagg cctattaaag tctgggcctt ttcttccgag ccatggagat
     2341 atctgggtag cttaattctc cccagtcctg ctgtggggtt ctcatgagtg ccgtcacgtc
     2401 tctggtgtca gggagtcttg aggacacacc cactgtgcag tgtgggcaga gttctgcctc
     2461 aagagggtct cccaggccct ccgccctgac ctctgcctcg gctactctgg aatcctcttc
     2521 tgaggctcga gctcacagca ggcctctgag tgagagtcct gctgtttaag acttggttcc
     2581 tcttgtttcc ttggagatgt ttgtccaaga gcacaatgta cattaaagcc tttgagttgg
     2641 ggctaatc
//
