LOCUS       XM_008765704            1872 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus aladin WD repeat nucleoporin (Aaas),
            transcript variant X1, mRNA.
ACCESSION   XM_008765704
VERSION     XM_008765704.2
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051342.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_008765704.3.
            
            On Jan 21, 2021 this sequence version replaced XM_008765704.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1872
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1872
                     /gene="Aaas"
                     /note="aladin WD repeat nucleoporin; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 16
                     ESTs, 4 long SRA reads, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 163
                     samples with support for all annotated introns"
                     /db_xref="GeneID:300259"
                     /db_xref="RGD:1308701"
     CDS             157..1839
                     /gene="Aaas"
                     /codon_start=1
                     /product="aladin isoform X1"
                     /protein_id="XP_008763926.1"
                     /db_xref="GeneID:300259"
                     /db_xref="RGD:1308701"
                     /translation="MCSLGLFPPPPPRGQVTLYEHNNELVTGNSYESPPPDFRGQVVG
                     VGDAAVGLQRVWINLPVLHLTKDPLKAPGRLDHGTRAAFIHHREQVWKRCINVWHDVG
                     LFGVLNEIANSEEEVFEWVKTASSWALALCGRASSLHGSLFPHLSLRSEDLIAEFAQV
                     TNWSSCCLRVFAWHPHTNKFAVALLDDSIRVYNANSTIVPSLKHRLQRNVAALAWKPL
                     SASVLAVACQSCILIWTLDPTSLSTRPSSGCAQVLSHPGHTPVTSLAWAPNGGWLLSA
                     SPVDAVILVWDVSTETCVPLPWFRGGGVTNLLWSPDGSKVLATTPSAVFRVWEARMWT
                     CEGWPTLSGRCQTGCWSPDGKRLLFTVLGEALIYSLSFPEPCGTEKGHVGGAKSATIV
                     ADLSETTIQTPDGEERLGGEAHAMVWDPSGERLAVLMKGNPRVQDGNPVILLFRTRNS
                     PVFELLPCGVIQGEPGAQAQLVSFHPAFNKGALLSVCWSTGRITHIPLYFVNAQFPRF
                     SPVLGRAQEPPAGGGGSVHEVPLFTETSPTSAPWDPLPGLPSAQPHSPHSHL"
ORIGIN      
        1 gaactttctt ccttgcactt ccgttcagct tcacgcagta gtttgtcctg tacggctacc
       61 cgtccgcata cgaatctagc ccgggaacta agattcaaga gagcgcagtc accagccggg
      121 agcctgtcgg ttccagacac cctccggact gacaagatgt gctccctggg gttgtttccc
      181 ccgccgccgc ctagaggtca agtcaccctg tatgagcaca ataacgagct ggtgaccggc
      241 aacagctatg agagcccgcc tcccgacttc cggggccagg tggtcggggt tggggatgcg
      301 gcggtgggtc tccagagagt gtggatcaat cttcctgtcc tacacctgac caaggatccc
      361 ctaaaagctc ctgggaggct ggaccatggt acaagagctg ccttcatcca tcatcgggag
      421 caagtgtgga agaggtgcat caatgtttgg cacgatgtgg gtctttttgg agtcctgaat
      481 gaaattgcaa attcagagga agaagtgttt gagtgggtaa agacagcctc cagctgggcc
      541 ctggctctct gtggccgggc ctcctccctc catggctcct tgttcccaca cctctcactc
      601 aggagtgagg atctgattgc tgaatttgcc caagtcacta actggtccag ctgctgctta
      661 cgggtctttg cctggcatcc tcacaccaac aagtttgcag tggccctgct ggatgactcc
      721 atccgtgttt ataatgccaa cagcactata gttccctccc tgaagcaccg tctacagcga
      781 aatgtggcag cactggcctg gaagcccctc agtgcctctg tcttggctgt ggcctgccag
      841 agctgtattc tcatctggac cctggacccc acttccttat ctacgagacc ctcctctggc
      901 tgcgcccagg tcttgtctca ccctgggcac acaccagtca ccagcttggc ttgggccccc
      961 aatggggggt ggctgctctc agcctcaccg gtagatgctg ttattctggt atgggacgtt
     1021 tcaacagaaa cctgtgtccc ccttccttgg ttccgaggag gaggggttac caacttgctg
     1081 tggtccccag atggcagcaa agtcctggct acaactcctt ccgctgtctt tcgagtctgg
     1141 gaggcccgga tgtggacttg tgaggggtgg ccaactctct cagggcgctg ccagactggc
     1201 tgctggagtc cagacggaaa acgattgttg ttcactgtat tgggggaagc attaatttat
     1261 tccttgtcat tcccagaacc atgtggaaca gagaaaggac atgttggagg tgcaaagtca
     1321 gccaccatcg tagcagatct ttctgagaca acaattcaga ccccagatgg agaggagaga
     1381 ctcgggggag aggctcacgc catggtttgg gaccctagtg gtgaacgact ggctgtgctc
     1441 atgaaaggaa acccacgggt tcaggatggg aatcctgtca tcctcctttt tcgaactcga
     1501 aacagccccg tgtttgagct gcttccctgt ggtgttattc agggggagcc gggagcccaa
     1561 gcccagctcg tcagcttcca tcctgctttc aacaaagggg ccttgctcag tgtgtgctgg
     1621 tccacaggcc gaatcaccca catccctctg tactttgtca acgcccaatt tccacgcttt
     1681 agcccagtgc ttggtcgggc ccaggagccc ccagctggag gtggaggctc tgttcatgaa
     1741 gtaccactat ttactgagac atcaccaacc tctgcccctt gggaccctct tccaggacta
     1801 ccatctgctc aaccccactc ccctcactcc cacttgtaaa taaagttttt cttgtttcca
     1861 ctcatttacc ag
//
