LOCUS       XM_006242387            1828 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus aladin WD repeat nucleoporin (Aaas),
            transcript variant X3, mRNA.
ACCESSION   XM_006242387
VERSION     XM_006242387.3
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051342.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006242387.4.
            
            On Jan 21, 2021 this sequence version replaced XM_006242387.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1828
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1828
                     /gene="Aaas"
                     /note="aladin WD repeat nucleoporin; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 20
                     ESTs, 10 long SRA reads, 6 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 234 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:300259"
                     /db_xref="RGD:1308701"
     CDS             155..1795
                     /gene="Aaas"
                     /codon_start=1
                     /product="aladin isoform X3"
                     /protein_id="XP_006242449.1"
                     /db_xref="GeneID:300259"
                     /db_xref="RGD:1308701"
                     /translation="MCSLGLFPPPPPRGQVTLYEHNNELVTGNSYESPPPDFRGQWIN
                     LPVLHLTKDPLKAPGRLDHGTRAAFIHHREQVWKRCINVWHDVGLFGVLNEIANSEEE
                     VFEWVKTASSWALALCGRASSLHGSLFPHLSLRSEDLIAEFAQVTNWSSCCLRVFAWH
                     PHTNKFAVALLDDSIRVYNANSTIVPSLKHRLQRNVAALAWKPLSASVLAVACQSCIL
                     IWTLDPTSLSTRPSSGCAQVLSHPGHTPVTSLAWAPNGGWLLSASPVDAVILVWDVST
                     ETCVPLPWFRGGGVTNLLWSPDGSKVLATTPSAVFRVWEARMWTCEGWPTLSGRCQTG
                     CWSPDGKRLLFTVLGEALIYSLSFPEPCGTEKGHVGGAKSATIVADLSETTIQTPDGE
                     ERLGGEAHAMVWDPSGERLAVLMKGNPRVQDGNPVILLFRTRNSPVFELLPCGVIQGE
                     PGAQAQLVSFHPAFNKGALLSVCWSTGRITHIPLYFVNAQFPRFSPVLGRAQEPPAGG
                     GGSVHEVPLFTETSPTSAPWDPLPGLPSAQPHSPHSHL"
ORIGIN      
        1 actttcttcc ttgcacttcc gttcagcttc acgcagtagt ttgtcctgta cggctacccg
       61 tccgcatacg aatctagccc gggaactaag attcaagaga gcgcagtcac cagccgggag
      121 cctgtcggtt ccagacaccc tccggactga caagatgtgc tccctggggt tgtttccccc
      181 gccgccgcct agaggtcaag tcaccctgta tgagcacaat aacgagctgg tgaccggcaa
      241 cagctatgag agcccgcctc ccgacttccg gggccagtgg atcaatcttc ctgtcctaca
      301 cctgaccaag gatcccctaa aagctcctgg gaggctggac catggtacaa gagctgcctt
      361 catccatcat cgggagcaag tgtggaagag gtgcatcaat gtttggcacg atgtgggtct
      421 ttttggagtc ctgaatgaaa ttgcaaattc agaggaagaa gtgtttgagt gggtaaagac
      481 agcctccagc tgggccctgg ctctctgtgg ccgggcctcc tccctccatg gctccttgtt
      541 cccacacctc tcactcagga gtgaggatct gattgctgaa tttgcccaag tcactaactg
      601 gtccagctgc tgcttacggg tctttgcctg gcatcctcac accaacaagt ttgcagtggc
      661 cctgctggat gactccatcc gtgtttataa tgccaacagc actatagttc cctccctgaa
      721 gcaccgtcta cagcgaaatg tggcagcact ggcctggaag cccctcagtg cctctgtctt
      781 ggctgtggcc tgccagagct gtattctcat ctggaccctg gaccccactt ccttatctac
      841 gagaccctcc tctggctgcg cccaggtctt gtctcaccct gggcacacac cagtcaccag
      901 cttggcttgg gcccccaatg gggggtggct gctctcagcc tcaccggtag atgctgttat
      961 tctggtatgg gacgtttcaa cagaaacctg tgtccccctt ccttggttcc gaggaggagg
     1021 ggttaccaac ttgctgtggt ccccagatgg cagcaaagtc ctggctacaa ctccttccgc
     1081 tgtctttcga gtctgggagg cccggatgtg gacttgtgag gggtggccaa ctctctcagg
     1141 gcgctgccag actggctgct ggagtccaga cggaaaacga ttgttgttca ctgtattggg
     1201 ggaagcatta atttattcct tgtcattccc agaaccatgt ggaacagaga aaggacatgt
     1261 tggaggtgca aagtcagcca ccatcgtagc agatctttct gagacaacaa ttcagacccc
     1321 agatggagag gagagactcg ggggagaggc tcacgccatg gtttgggacc ctagtggtga
     1381 acgactggct gtgctcatga aaggaaaccc acgggttcag gatgggaatc ctgtcatcct
     1441 cctttttcga actcgaaaca gccccgtgtt tgagctgctt ccctgtggtg ttattcaggg
     1501 ggagccggga gcccaagccc agctcgtcag cttccatcct gctttcaaca aaggggcctt
     1561 gctcagtgtg tgctggtcca caggccgaat cacccacatc cctctgtact ttgtcaacgc
     1621 ccaatttcca cgctttagcc cagtgcttgg tcgggcccag gagcccccag ctggaggtgg
     1681 aggctctgtt catgaagtac cactatttac tgagacatca ccaacctctg ccccttggga
     1741 ccctcttcca ggactaccat ctgctcaacc ccactcccct cactcccact tgtaaataaa
     1801 gtttttcttg tttccactca tttaccag
//
