LOCUS       NM_173002               4122 bp    mRNA    linear   ROD 02-JUN-2024
DEFINITION  Mus musculus ZXD family zinc finger C (Zxdc), transcript variant 2,
            mRNA.
ACCESSION   NM_173002
VERSION     NM_173002.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 4122)
  AUTHORS   Zhao,J., Lu,P., Wan,C., Huang,Y., Cui,M., Yang,X., Hu,Y., Zheng,Y.,
            Dong,J., Wang,M., Zhang,S., Liu,Z., Bian,S., Wang,X., Wang,R.,
            Ren,S., Wang,D., Yao,Z., Chang,G., Tang,F. and Zhao,X.Y.
  TITLE     Cell-fate transition and determination analysis of mouse male germ
            cells throughout development
  JOURNAL   Nat Commun 12 (1), 6839 (2021)
   PUBMED   34824237
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4122)
  AUTHORS   Wiese,C.B., Ireland,S., Fleming,N.L., Yu,J., Valerius,M.T.,
            Georgas,K., Chiu,H.S., Brennan,J., Armstrong,J., Little,M.H.,
            McMahon,A.P. and Southard-Smith,E.M.
  TITLE     A genome-wide screen to identify transcription factors expressed in
            pelvic Ganglia of the lower urinary tract
  JOURNAL   Front Neurosci 6, 130 (2012)
   PUBMED   22988430
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 4122)
  AUTHORS   Guo,G., Huss,M., Tong,G.Q., Wang,C., Li Sun,L., Clarke,N.D. and
            Robson,P.
  TITLE     Resolution of cell fate decisions revealed by single-cell gene
            expression analysis from zygote to blastocyst
  JOURNAL   Dev Cell 18 (4), 675-685 (2010)
   PUBMED   20412781
REFERENCE   4  (bases 1 to 4122)
  AUTHORS   Yokoyama,S., Ito,Y., Ueno-Kudoh,H., Shimizu,H., Uchibe,K.,
            Albini,S., Mitsuoka,K., Miyaki,S., Kiso,M., Nagai,A., Hikata,T.,
            Osada,T., Fukuda,N., Yamashita,S., Harada,D., Mezzano,V., Kasai,M.,
            Puri,P.L., Hayashizaki,Y., Okado,H., Hashimoto,M. and Asahara,H.
  TITLE     A systems approach reveals that the myogenesis genome network is
            regulated by the transcriptional repressor RP58
  JOURNAL   Dev Cell 17 (6), 836-848 (2009)
   PUBMED   20059953
REFERENCE   5  (bases 1 to 4122)
  AUTHORS   van der Zwaag,B., Burbach,J.P., Scharfe,C., Oefner,P.J.,
            Brunner,H.G., Padberg,G.W. and van Bokhoven,H.
  TITLE     Identifying new candidate genes for hereditary facial paresis on
            chromosome 3q21-q22 by RNA in situ hybridization in mouse
  JOURNAL   Genomics 86 (1), 55-67 (2005)
   PUBMED   15953540
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK081005.1, AK044529.1 and AK044429.1.
            
            On Oct 31, 2007 this sequence version replaced NM_173002.2.
            
            Transcript Variant: This variant (2) has additional exons in the 3'
            coding region and UTR. The resulting protein (isoform 2) is longer
            and has a distinct C-terminus compared to isoform 1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK044429.1, AK047538.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            CDS uses downstream in-frame AUG :: upstream AUG and CDS extension
                                                is not conserved
            RefSeq Select criteria           :: based on conservation,
                                                expression, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-76                AK081005.1         3-78
            77-109              AK044529.1         1-33
            110-4122            AK044429.1         3-4015
FEATURES             Location/Qualifiers
     source          1..4122
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="6"
                     /map="6 40.16 cM"
     gene            1..4122
                     /gene="Zxdc"
                     /gene_synonym="A930012H20; B930086F11Rik"
                     /note="ZXD family zinc finger C"
                     /db_xref="GeneID:80292"
                     /db_xref="MGI:MGI:1933108"
     exon            1..1075
                     /gene="Zxdc"
                     /gene_synonym="A930012H20; B930086F11Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             166..2742
                     /gene="Zxdc"
                     /gene_synonym="A930012H20; B930086F11Rik"
                     /note="isoform 2 is encoded by transcript variant 2; zinc
                     finger protein ZXDC"
                     /codon_start=1
                     /product="zinc finger protein ZXDC isoform 2"
                     /protein_id="NP_766590.1"
                     /db_xref="CCDS:CCDS20358.1"
                     /db_xref="GeneID:80292"
                     /db_xref="MGI:MGI:1933108"
                     /translation="MDLPAVLAAPATRGDQHGGGPSRLRRGAGPSLGAGPGRRRLLLL
                     RGPEDGGPGPRPEEAPGPSPPPPEDGGDSFVVLLEVPRAADTHGQEEAEPDSGASPTE
                     QVPAAAPGAALAGTVTIHNQDLLVRFDRGVFTLAAAPAPAAPSLHPATTPGLEPSSAA
                     ASRRGPVAASAGSPAYRCPEPQCALSFAKKHQLKVHLLTHGSLQGRRPFKCPLDGCGW
                     AFTTSYKLKRHLQSHDKLRPFSCPVGGCGKKFTTVYNLKAHMKGHEQESLFKCEVCAE
                     RFPTHAKLNSHQRSHFEPERPYKCDFPGCEKTFITVSALFSHNRAHFREQELFSCSFP
                     GCNKQYDKACRLKIHLRSHTGERPFICDSDSCGWTFTSMSKLLRHKRKHDDDRRFTCP
                     VEGCGKSFTRAEHLKGHSITHLGTKPFECPVEGCCARFSARSSLYIHSKKHLQDVGTP
                     KSRCPVSSCNRLFTSKHSMKAHVVRQHSRRQDLVPQLEAPSSLTPSSELSSPGQSELT
                     NIDLAALFSDTPANSSSSTAGSDEALNSGILTIDVTSVSSSLGGNLPTNNNSLGPMDP
                     LVLVAHGDMPPSLDSPLVLGTSATVLQPGSFSADDSQAMSTGAVGCLVALPVRNLNQD
                     SPALTPSNNLTAPGTTPTSSDTTQETGSVPDLLVPIKVEQDLSPVPDVVQGQKESHGP
                     SQSVLSSSTERPGAQKDSELSAGTGSLYLESGGSARTDYRAIQLVKKKKQKGTGSDEG
                     ASDSAHRKVKGGTINPPHVHSGQHSCFCGTLMVPSGGLTVPAPAAGLQCVQIPVLQDD
                     PSGEGGLPLGLSPQRSAFHPYFTVDLPVYVLQEVLPAPGGFAGLETAQVPGSTINLRD
                     LE"
     exon            1076..1228
                     /gene="Zxdc"
                     /gene_synonym="A930012H20; B930086F11Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1229..1307
                     /gene="Zxdc"
                     /gene_synonym="A930012H20; B930086F11Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1308..1438
                     /gene="Zxdc"
                     /gene_synonym="A930012H20; B930086F11Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1439..1609
                     /gene="Zxdc"
                     /gene_synonym="A930012H20; B930086F11Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1610..2298
                     /gene="Zxdc"
                     /gene_synonym="A930012H20; B930086F11Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2299..2383
                     /gene="Zxdc"
                     /gene_synonym="A930012H20; B930086F11Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2384..2553
                     /gene="Zxdc"
                     /gene_synonym="A930012H20; B930086F11Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2554..2655
                     /gene="Zxdc"
                     /gene_synonym="A930012H20; B930086F11Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2656..4122
                     /gene="Zxdc"
                     /gene_synonym="A930012H20; B930086F11Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      4097..4102
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Zxdc"
                     /gene_synonym="A930012H20; B930086F11Rik"
                     /note="putative"
     polyA_site      4122
                     /gene="Zxdc"
                     /gene_synonym="A930012H20; B930086F11Rik"
                     /note="putative"
ORIGIN      
        1 ggctcctgcg cacgcgcagc tcgagatgcg actctgggct gtagtctaag ctcagctttg
       61 acagaggctc ccggggggcg gaccctaggt gtcgcgcgca tgcctggcag ggctgggcag
      121 ctcttctccg gtggctgcgg ttcggacgcc tcagctgggc ctaagatgga cctcccggcg
      181 gtgctggccg ccccggccac gcgcggagac caacatggcg gtggcccgag ccgacttcgc
      241 cgcggcgcgg ggccgtccct cggtgccggt cccgggcgcc gtcgcctgct gctgctgagg
      301 ggcccggaag atggcgggcc cgggccgcgt ccagaggagg ccccggggcc cagcccgccg
      361 cccccggagg acggcggcga ctccttcgtg gtactgctgg aagtgccgcg cgcggccgac
      421 acccatggtc aggaggaggc cgagcccgat tcgggcgcga gccccacgga acaggtcccg
      481 gccgccgccc ccggcgcagc tctggcaggc acggtcacca tccacaacca ggacctcctg
      541 gtgcgcttcg accgcggcgt cttcacgctg gctgcggcgc ccgcgccagc cgccccgagc
      601 ctgcatcccg cgaccacccc gggcctggag ccctcgagcg ctgctgcgtc ccgccgcggg
      661 ccggtggccg ctagcgctgg ctccccggcc taccgctgtc cggagccgca gtgcgcgctg
      721 agcttcgcca agaagcacca gttgaaggtg cacctgctga cgcacggcag cctccagggc
      781 cggcggccct tcaagtgccc gctggatggc tgcggctggg ccttcaccac ctcctacaag
      841 ctcaaacggc acctgcagtc gcatgacaag ctgcgtccct ttagctgccc ggtgggcggc
      901 tgcggcaaga agttcaccac cgtctacaac ctcaaggcgc acatgaaggg ccacgagcag
      961 gagagcttgt tcaagtgcga ggtgtgcgcc gagcgcttcc ccacacacgc caagctcaac
     1021 tcccaccagc gcagccactt cgagcccgag cggccttaca agtgtgattt ccccggctgt
     1081 gagaagacgt tcatcacagt gagtgccctg ttttcccata atcgagccca cttcagggag
     1141 caagagctct tttcctgctc ctttcctggg tgcaataaac aatatgacaa agcctgccga
     1201 ctgaaaattc acttgcgaag tcacacaggt gaaagaccat ttatttgtga ctcagacagt
     1261 tgtggctgga ccttcaccag tatgtccaaa cttctaagac acaaaaggaa acatgatgat
     1321 gaccggaggt tcacttgccc tgttgaaggt tgtggcaagt cattcactag agcagagcat
     1381 ctgaagggcc acagtatcac ccacctggga acaaagccat tcgaatgccc tgtggaaggg
     1441 tgctgtgcca ggttctcagc tcgcagcagt ctgtacattc attctaagaa acatctgcag
     1501 gacgtgggta ctccgaaaag ccgctgccca gtgtccagct gcaaccgact cttcacctcc
     1561 aagcatagca tgaaggcaca cgtggtgcgg cagcacagcc ggcgccaaga tcttgtacct
     1621 cagctggaag ctccgagctc tctcacaccc agcagtgaac tgagtagccc aggccaaagt
     1681 gagctcacca acatagatct cgcagcactt ttctctgaca cacctgctaa tagcagcagt
     1741 tcaacagctg ggtcggatga agcactgaac tctgggatcc tcaccattga tgtcacttct
     1801 gtgagctctt ctctgggagg gaatctccct actaacaata actccttagg accaatggat
     1861 ccactcgttc tagtggccca cggtgatatg cctccaagtt tggacagtcc tcttgttctt
     1921 gggacatcgg ccacggttct ccaaccaggc agcttcagtg cagatgattc acaggccatg
     1981 agcacaggag cagtaggctg cctggtggct ctgcctgtga ggaacttgaa tcaagactct
     2041 ccagctttga cccccagcaa taacttgaca gcacctggta ccacaccaac ttcttcagac
     2101 accacccaag aaactggcag tgtgccagat ctgctggttc caataaaggt ggaacaagac
     2161 ttgtctcctg tcccagatgt ggtccagggg cagaaagaaa gccatgggcc atcccaatct
     2221 gtgctgtcca gctctacaga gaggccaggg gctcagaagg actcagagct cagtgctggc
     2281 acaggcagtc tctacttgga aagtgggggc tcagcaagaa ctgattaccg agccattcaa
     2341 ctagtcaaga aaaaaaagca gaaaggaact gggagcgatg aaggagcctc tgactctgct
     2401 cacaggaaag taaaaggtgg cacgatcaac cctcctcatg tccactcagg ccagcacagt
     2461 tgtttctgtg gaactctcat ggtacccagt ggaggtctga cagtgccagc ccctgcagct
     2521 gggctgcagt gtgtccagat ccctgttctg caggatgacc cctcaggtga aggaggctta
     2581 ccactgggcc tcagcccaca gcgctctgcc ttccacccct acttcaccgt ggatctgcct
     2641 gtctacgtcc tccaggaggt gcttccagca cctggaggtt ttgctggact ggagactgca
     2701 caggtaccag gaagtactat caacctgcgg gaccttgagt gacagcagtc ttgagccaat
     2761 gaagactgaa ttccaggctg tgcttcaaga cctcagctgc tgtgggtggg cagagactca
     2821 tttcacttcc tcagcactcc agcctgattc tttgagactt tggggtacac atattgaaag
     2881 tactttgatt ctgttccagc aagagccagt ttgggctata ctctttgaaa ctgcctccac
     2941 aggttgccct ctgtgatagg caccctgccc atgccgtgtg tgtgtgtgtg tgtgtgtgtg
     3001 tgtgtgtgtg tacacgtgcg tgcacgcacg cacatgcatt ccagcccttc ccaggtcccc
     3061 ttgggtctga cgtgggtagc accttttaca ttaaaagatc cttgcaggaa gtgggtagag
     3121 catggctccc tcctcaggta cttctctata ctgagttgta gtgtattagg atttgtctga
     3181 cacattctga gagcttatat aacagcttct cacctgtggg aatggttttg gtgggtgtat
     3241 tgctttctct acactgtatg ctgtagtgaa gccaaagtca ggttgagctc tggcaaaaca
     3301 tctagtctga aaggtgattg gctggcctgc cgcctgccag tagcctgcta atagaacctc
     3361 ttcctaaatt gacagtgtgc tcatagtttg tgaatgaaga gttcgggctt ttaaagtcat
     3421 ctttctaaat tctgtttctg gaattcatgg taagtagtaa cttgtcagca gtctctacag
     3481 tggagttctg aatgctttat gttatgtgta gggctggaac aataggcttg ttttatgatt
     3541 gaggttggag ataagcatat tatgtggcct tgtgtgtttt cacagaatga tttggtcttc
     3601 cccgtggaga cggttggttg ccttgcacat atttgttagt caagactgga tacagggtca
     3661 ctcagcaatg ctttgggctt ttgatgtgtg tgcttattca gatactgttt tgattctgtc
     3721 ccatctgagt tgctttgttt cttggatttg gggagagctc tgaaactggg catgagtttt
     3781 ctctggatgc tacctgggtg ctgctcccta caaaaggatt ataaatccta cttgagaaga
     3841 ctcctttcca catgtctctc ctgcatcaca ggccaaagtt taggggttga acttgcctag
     3901 ctgtaatcag cgcccccata gacactcagt aggcagcctg gtaccactgt cgcctgcctc
     3961 cagagcccac cccacagaga agttgctcca gcagctccca cagcctccag cgtgtgtctg
     4021 caagtgacag gatgggctgt tgtgctctga gctctggagc ttcctgctgc cataggccca
     4081 gtccttagtg caaatgaata aaagtgttcg aatgttatgt gc
//
