LOCUS       NM_172503               4348 bp    mRNA    linear   ROD 02-JUN-2024
DEFINITION  Mus musculus zinc finger SWIM-type containing 4 (Zswim4), mRNA.
ACCESSION   NM_172503
VERSION     NM_172503.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 4348)
  AUTHORS   Tischfield,D.J., Saraswat,D.K., Furash,A., Fowler,S.C.,
            Fuccillo,M.V. and Anderson,S.A.
  TITLE     Loss of the neurodevelopmental gene Zswim6 alters striatal
            morphology and motor regulation
  JOURNAL   Neurobiol Dis 103, 174-183 (2017)
   PUBMED   28433741
REFERENCE   2  (bases 1 to 4348)
  AUTHORS   Yang,Y., Yu,X., Song,L. and An,C.
  TITLE     ABI4 activates DGAT1 expression in Arabidopsis seedlings during
            nitrogen deficiency
  JOURNAL   Plant Physiol 156 (2), 873-883 (2011)
   PUBMED   21515696
REFERENCE   3  (bases 1 to 4348)
  AUTHORS   Ravasi,T., Suzuki,H., Cannistraci,C.V., Katayama,S., Bajic,V.B.,
            Tan,K., Akalin,A., Schmeier,S., Kanamori-Katayama,M., Bertin,N.,
            Carninci,P., Daub,C.O., Forrest,A.R., Gough,J., Grimmond,S.,
            Han,J.H., Hashimoto,T., Hide,W., Hofmann,O., Kamburov,A., Kaur,M.,
            Kawaji,H., Kubosaki,A., Lassmann,T., van Nimwegen,E.,
            MacPherson,C.R., Ogawa,C., Radovanovic,A., Schwartz,A.,
            Teasdale,R.D., Tegner,J., Lenhard,B., Teichmann,S.A., Arakawa,T.,
            Ninomiya,N., Murakami,K., Tagami,M., Fukuda,S., Imamura,K., Kai,C.,
            Ishihara,R., Kitazume,Y., Kawai,J., Hume,D.A., Ideker,T. and
            Hayashizaki,Y.
  TITLE     An atlas of combinatorial transcriptional regulation in mouse and
            man
  JOURNAL   Cell 140 (5), 744-752 (2010)
   PUBMED   20211142
  REMARK    Erratum:[Cell. 2010 Apr 16;141(2):369. Kamburov, Atanas [added];
            Kaur, Mandeep [added]; MacPherson, Cameron Ross [added];
            Radovanovic, Aleksandar [added]; Schwartz, Ariel [added]]
REFERENCE   4  (bases 1 to 4348)
  AUTHORS   Yokoyama,S., Ito,Y., Ueno-Kudoh,H., Shimizu,H., Uchibe,K.,
            Albini,S., Mitsuoka,K., Miyaki,S., Kiso,M., Nagai,A., Hikata,T.,
            Osada,T., Fukuda,N., Yamashita,S., Harada,D., Mezzano,V., Kasai,M.,
            Puri,P.L., Hayashizaki,Y., Okado,H., Hashimoto,M. and Asahara,H.
  TITLE     A systems approach reveals that the myogenesis genome network is
            regulated by the transcriptional repressor RP58
  JOURNAL   Dev Cell 17 (6), 836-848 (2009)
   PUBMED   20059953
REFERENCE   5  (bases 1 to 4348)
  AUTHORS   Ling,K.H., Hewitt,C.A., Beissbarth,T., Hyde,L., Banerjee,K.,
            Cheah,P.S., Cannon,P.Z., Hahn,C.N., Thomas,P.Q., Smyth,G.K.,
            Tan,S.S., Thomas,T. and Scott,H.S.
  TITLE     Molecular networks involved in mouse cerebral corticogenesis and
            spatio-temporal regulation of Sox4 and Sox11 novel antisense
            transcripts revealed by transcriptome profiling
  JOURNAL   Genome Biol 10 (10), R104 (2009)
   PUBMED   19799774
REFERENCE   6  (bases 1 to 4348)
  AUTHORS   Okazaki,N., Kikuno,R., Ohara,R., Inamoto,S., Koseki,H., Hiraoka,S.,
            Saga,Y., Kitamura,H., Nakagawa,T., Nagase,T., Ohara,O. and Koga,H.
  TITLE     Prediction of the coding sequences of mouse homologues of FLJ
            genes: the complete nucleotide sequences of 110 mouse
            FLJ-homologous cDnas identified by screening of terminal sequences
            of cDNA clones randomly sampled from size-fractionated libraries
  JOURNAL   DNA Res 11 (2), 127-135 (2004)
   PUBMED   15449545
REFERENCE   7  (bases 1 to 4348)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AC122794.3 and
            AC159266.3.
            
            On Nov 17, 2006 this sequence version replaced NM_172503.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC058080.1, AK052168.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164138, SAMN01164141
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-176               AC122794.3         67612-67787
            177-378             AC122794.3         69550-69751
            379-735             AC122794.3         73557-73913
            736-884             AC122794.3         75483-75631
            885-1035            AC122794.3         75712-75862
            1036-1203           AC122794.3         77815-77982
            1204-1554           AC122794.3         78488-78838
            1555-1692           AC122794.3         80374-80511
            1693-1947           AC122794.3         80729-80983
            1948-2083           AC122794.3         81299-81434
            2084-2238           AC159266.3         212075-212229       c
            2239-2402           AC159266.3         209494-209657       c
            2403-2484           AC159266.3         206272-206353       c
            2485-4348           AC159266.3         203191-205054       c
FEATURES             Location/Qualifiers
     source          1..4348
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="8"
                     /map="8 40.59 cM"
     gene            1..4348
                     /gene="Zswim4"
                     /gene_synonym="D330002I24; E130119J17Rik"
                     /note="zinc finger SWIM-type containing 4"
                     /db_xref="GeneID:212168"
                     /db_xref="MGI:MGI:2443726"
     exon            1..176
                     /gene="Zswim4"
                     /gene_synonym="D330002I24; E130119J17Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             39..3344
                     /gene="Zswim4"
                     /gene_synonym="D330002I24; E130119J17Rik"
                     /note="zinc finger, SWIM domain containing 4"
                     /codon_start=1
                     /product="zinc finger SWIM domain-containing protein 4"
                     /protein_id="NP_766091.2"
                     /db_xref="CCDS:CCDS22471.1"
                     /db_xref="GeneID:212168"
                     /db_xref="MGI:MGI:2443726"
                     /translation="MEPPAAKRSRGCPAGDEPGTGARRSRPEPLLDLSAKRVAESWAF
                     EQVEERFSRVPEPVQKRIVFWSFPRSEREICMYSSLGYQPPEGEQDTRVPFTRGLHLL
                     QSGAVDRVLQVGFHLSGNIREVGGPGEPEHLYHVSISFDRCKITSVSCGCDNRDLFYC
                     AHVVALSLYRIRHARQVELRLPISETLSQMNRDQLQKFVQYLISAHHTEVLPTAQRLA
                     DEILLLGSEINLVHGAPDPTAGAGTEDANCWHLDEEQIQEQVKQLLSNGGHYGASQQL
                     RSMFSKVREMLRARDSNGARMLILMTEQFLQDPRLALWRQQGAGMTDKCRQLWDELGA
                     LWVCVILSPHCKPDERSGWLQLLGTWDKLDVCPLEEGNYSLDIPSLQPALTSRTGSED
                     EEEVTAASPRRTVFSRALQAGELHWNDSHLQRILASDSCGPTLTGSMGSDKPTFDPQG
                     HPIWLGEPFPTACARVDTLRAHGYPHKALRLACAIINTLRLQRRHQLESYKQQKKELL
                     QKGATGVTSTEGWVGHPLDPIGCLCRALLEACRLEEEPHSLFPDSAPEKRKLAYQHVL
                     VPGSPGESYLALALEVALLGLGQQRALPEGLYAQDKVVRNEEQLLALLEEVELDERLV
                     QVLRKQAGLLLEGGPFSGFGEVIFRESVPMHTCARYLFTALLPHDPDLAFRLALRAMR
                     LPVLETTFPAGESHPNPLDSIMSNRFPRWFILGHLETRQCELASTMLTAAKGDTKWLH
                     AVLGSVQQNIHSPALLFKLAQDACKTATPASAPPDTVLLGIALELGLQVMRMTLNTMT
                     WRRREMVRWLVSCATEIGPPALMSIMKNWYSLFTPVEAVTIVAVTGTTHATLLRLQLD
                     TAGREELWACARTLALQCAMKDPQNCALPALTLCEKNHAAFEAAYQIVLDAAAGGLGH
                     AHLFTVARYMEHRGLPLRAYKLATLALAQLSIAFNQDSHPAVNDVLWACSLSHSLGRH
                     ELSAIVPLIIRSIHCAPMLSDILRRWTLSAPGLGPLGARRATKPLGTDRAPLCQLLDA
                     AVAAYITTSHSRLTHISPRHYGDFIEFLGKARETFLLAPDGHLQFAQFLENLKQTYKG
                     KKKLMLLVRERFG"
     exon            177..378
                     /gene="Zswim4"
                     /gene_synonym="D330002I24; E130119J17Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            379..735
                     /gene="Zswim4"
                     /gene_synonym="D330002I24; E130119J17Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            736..884
                     /gene="Zswim4"
                     /gene_synonym="D330002I24; E130119J17Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            885..1035
                     /gene="Zswim4"
                     /gene_synonym="D330002I24; E130119J17Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1036..1203
                     /gene="Zswim4"
                     /gene_synonym="D330002I24; E130119J17Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1204..1554
                     /gene="Zswim4"
                     /gene_synonym="D330002I24; E130119J17Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1555..1692
                     /gene="Zswim4"
                     /gene_synonym="D330002I24; E130119J17Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1693..1947
                     /gene="Zswim4"
                     /gene_synonym="D330002I24; E130119J17Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1948..2083
                     /gene="Zswim4"
                     /gene_synonym="D330002I24; E130119J17Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2084..2238
                     /gene="Zswim4"
                     /gene_synonym="D330002I24; E130119J17Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2239..2402
                     /gene="Zswim4"
                     /gene_synonym="D330002I24; E130119J17Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2403..2484
                     /gene="Zswim4"
                     /gene_synonym="D330002I24; E130119J17Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2485..4348
                     /gene="Zswim4"
                     /gene_synonym="D330002I24; E130119J17Rik"
                     /inference="alignment:Splign:2.1.0"
     polyA_site      4249
                     /gene="Zswim4"
                     /gene_synonym="D330002I24; E130119J17Rik"
     polyA_site      4348
                     /gene="Zswim4"
                     /gene_synonym="D330002I24; E130119J17Rik"
                     /note="major polyA site"
ORIGIN      
        1 gtcttaaagg ggccgcgtcg tccggccggc tcggccggat ggagcccccg gcggccaagc
       61 gcagccgggg ctgccccgcg ggggacgagc ccgggaccgg ggcccgtcgc agtcgccccg
      121 agccgttgtt ggaccttagc gccaagcggg tggccgagag ctgggccttc gagcaggtgg
      181 aggaaaggtt ctcccgggtg ccggaaccgg ttcagaagcg cattgtgttc tggtcttttc
      241 cacgaagtga gcgggagatc tgtatgtact catcactggg ctaccagccc ccagaaggtg
      301 agcaggacac ccgggtacca ttcacccgtg ggctgcacct gctacagagt ggggctgtgg
      361 atcgagtgct acaagtaggg ttccacctga gtgggaatat tcgagaagtt gggggcccag
      421 gagagccaga gcatctctac cacgtctcca tcagctttga ccgctgcaag atcacatctg
      481 tgagctgtgg ctgcgacaat cgggacctct tctactgtgc ccacgtggtg gcgctgtcat
      541 tgtaccgcat ccgtcatgct cgccaggtgg agctgcggct gcccatctct gagactctgt
      601 cacaaatgaa ccgggatcag cttcagaagt ttgtgcagta tctcatcagt gcacaccaca
      661 ctgaggtgct gcctaccgcc caacgtcttg ctgacgagat cctcctgctg ggctctgaga
      721 tcaacctggt tcatggtgcc ccagatccca cagcgggtgc aggcacagaa gatgccaact
      781 gttggcatct ggatgaggag cagatccaag agcaggtgaa acagctgctg tccaatggtg
      841 gccactatgg ggccagccag cagctgcgct ccatgttcag caaggtgcgg gagatgcttc
      901 gagcacggga ctccaatggg gcacgcatgc taatcctcat gactgagcag ttcctgcagg
      961 accctcgcct ggccctgtgg cggcagcaag gtgctggcat gacagacaag tgccggcagc
     1021 tgtgggatga gctgggggct ttgtgggtct gtgtcatttt gagcccacac tgcaaaccag
     1081 atgagcggtc gggatggctg cagctacttg gcacatggga caagctagat gtgtgcccac
     1141 tggaagaagg caactattcc ttggacatcc ccagcctaca gcctgctcta acctccagga
     1201 caggctcaga ggatgaagaa gaggtgacag ccgccagccc ccgcaggaca gttttcagcc
     1261 gagcactgca ggctggagag ttgcactgga atgacagcca cctacagagg atcctggcca
     1321 gtgattcctg tggccccacc ctcactggca gtatgggaag tgacaagcca acctttgacc
     1381 ctcagggcca ccccatctgg ctgggcgaac ctttccctac tgcctgtgca cgggtggata
     1441 ctttgcgggc ccatggttat ccccacaagg ctctgcggct ggcgtgtgcc ataatcaaca
     1501 ccctgcgcct gcagaggcga caccagcttg agagctacaa gcagcagaaa aaagaactgc
     1561 tccagaaagg tgctactggt gtcacaagca ctgaaggttg ggtgggccat cccctggatc
     1621 ccattggctg cctctgcagg gcactgctgg aggcctgtcg cctggaggag gagcctcact
     1681 ctcttttccc agactcagcc ccagagaagc gaaagctggc ctaccagcac gtgctggtgc
     1741 ccgggagccc tggagagtcc tacttggcac tggcactgga agtggcactc ctggggctag
     1801 ggcagcagcg ggccctgccg gagggactgt atgcccagga caaagtggtg cgcaatgaag
     1861 aacagctact ggccctgctg gaggaggtgg agctggacga gcggctggtg caagtgctgc
     1921 gaaagcaggc tgggctgctg ctggaaggag gccctttcag cggctttgga gaagtgattt
     1981 tccgggagag cgtacccatg cacacctgtg cccgatactt gttcactgcg ctgctgcccc
     2041 acgacccaga tctggccttc cgcctggcgc tccgagccat gaggctgcct gtgctggaga
     2101 caacattccc cgctggagaa tctcacccca acccactgga ctccatcatg agtaaccgct
     2161 tcccccggtg gttcatcctt ggccacctgg agacccgcca gtgtgagctg gcctccacca
     2221 tgctgacggc tgccaaagga gataccaagt ggctgcatgc ggttctgggc tccgtccagc
     2281 aaaatatcca ctccccagcc ctgctcttca agttggcaca ggatgcctgc aagacagcca
     2341 ctccagccag cgcaccgcca gacaccgtgc tgctgggcat cgcgctggag ctcggcctgc
     2401 aggtgatgcg gatgacactg aacaccatga cttggcggcg cagggagatg gttcgctggc
     2461 tggttagctg cgccacggag attggcccac cagcgctgat gagcatcatg aagaactggt
     2521 actccttgtt caccccagtg gaggcggtca ccatagtggc agtgacaggc accacgcatg
     2581 ccactttgct gcgactgcag ctagatacag ctgggcgaga ggagctctgg gcttgtgccc
     2641 gcaccttggc actgcagtgc gccatgaagg atccccagaa ctgcgccttg ccagccctga
     2701 ccctgtgtga gaagaaccac gcggcctttg aggctgccta ccagattgtg ctggacgctg
     2761 cagccggtgg cctcggccac gcccacctct tcacggttgc acggtatatg gagcatcgag
     2821 gcctgcctct gcgggcctac aagctggcca cgctagcctt ggcacaactc agcattgcct
     2881 tcaaccaaga cagccaccct gcagtcaacg atgtgctgtg ggcctgctcc ctcagccact
     2941 cgctggggcg gcacgaattg tcggccattg tccctctcat catccgaagc atccactgtg
     3001 cacccatgct ctcagacatc ctgcgacgct ggacactctc agcacccggg ctgggcccac
     3061 tgggggcccg cagggctacc aaaccactag ggactgacag ggcaccactt tgtcagcttc
     3121 tggatgccgc agtagccgcg tacataacca ccagccactc tcgcctcacc cacattagcc
     3181 cacgccacta tggtgacttc attgagttcc tgggcaaagc tcgagagacc ttccttctgg
     3241 caccagacgg gcacctccag ttcgcacagt tcttagaaaa cctgaaacag acgtacaagg
     3301 gaaagaagaa gttgatgctg ttggttcggg aacggtttgg ctgaggaact gcagaaagcc
     3361 gggagcatgg gtgtcccagg cccaccttcc tcaaacagga ggcccatggc tacttgcagt
     3421 aaagttacag aggtgggagg cagagggtga catcattcca ggtgtgtgcc taggagtgtg
     3481 cagacaaacg ggacatgcga tctgaggatc cgaagccata ctgctaacta gaccctgcag
     3541 ggagtatgtg cctgggcacc tcacacggaa gaagcaagct ctggctcttc cagactccca
     3601 gggtcagctg ggacttccag gagaagggct gggccagagt gaagttaggc ctccaactca
     3661 gtgcagcaga tgctccagag ccggagctgg ccggagccta ggcacttcac atcagggtag
     3721 ttacttccca ctgtgtttct cccctctcca cagctcaggg ctcctgtccc actgccctgc
     3781 gcccccagcc ccagctttcc agcacaaatg cctcacccca ctgaaggata ttaagaggtc
     3841 ttgggcctct gccacatacc tcacccccaa atacccttgt caagccaggg cctgtcttct
     3901 cttgggcacc aaggtcacag ggtaggctgg ggacagctct ctgctggcca gaccccacca
     3961 ctagtaactg gatacacaac tcaggagtca ggctgccctc cagcctgttg tgggaggcac
     4021 aggcagacag ccagggaccc cgttctgtct tcctcttgct ctgcacctcc atttgtttcc
     4081 ccactccctt agtttcccca tgtctgcatc tctctcaagt cccagctgct gacaggcctt
     4141 cctgtatccc aggccttggc ccagggagga agagaaggga gagcctccac cccagacgca
     4201 cctgtcttct ctcttgtata ttaaggaaaa agttggcatc attttgtaac tttttttctt
     4261 atttattgaa ccccatactg tattcttttc cttttttttt cctttttttt taaaaaaaag
     4321 attgaacaca acttcttttt aacttcaa
//
