LOCUS       NM_001110316            1829 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Mus musculus zinc finger and SCAN domain containing 4F (Zscan4f),
            mRNA.
ACCESSION   NM_001110316 XM_001479557 XM_983435
VERSION     NM_001110316.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1829)
  AUTHORS   Rong,Y., Zhu,Y.Z., Yu,J.L., Wu,Y.W., Ji,S.Y., Zhou,Y., Jiang,Y.,
            Jin,J., Fan,H.Y., Shen,L. and Sha,Q.Q.
  TITLE     USP16-mediated histone H2A lysine-119 deubiquitination during
            oocyte maturation is a prerequisite for zygotic genome activation
  JOURNAL   Nucleic Acids Res 50 (10), 5599-5616 (2022)
   PUBMED   35640597
REFERENCE   2  (bases 1 to 1829)
  AUTHORS   Rong,Y., Ji,S.Y., Zhu,Y.Z., Wu,Y.W., Shen,L. and Fan,H.Y.
  TITLE     ZAR1 and ZAR2 are required for oocyte meiotic maturation by
            regulating the maternal transcriptome and mRNA translational
            activation
  JOURNAL   Nucleic Acids Res 47 (21), 11387-11402 (2019)
   PUBMED   31598710
REFERENCE   3  (bases 1 to 1829)
  AUTHORS   Ruebel,M.L., Vincent,K.A., Schall,P.Z., Wang,K. and Latham,K.E.
  TITLE     SMCHD1 terminates the first embryonic genome activation event in
            mouse two-cell embryos and contributes to a transcriptionally
            repressive state
  JOURNAL   Am J Physiol Cell Physiol 317 (4), C655-C664 (2019)
   PUBMED   31365290
REFERENCE   4  (bases 1 to 1829)
  AUTHORS   Eckersley-Maslin,M.A., Svensson,V., Krueger,C., Stubbs,T.M.,
            Giehr,P., Krueger,F., Miragaia,R.J., Kyriakopoulos,C.,
            Berrens,R.V., Milagre,I., Walter,J., Teichmann,S.A. and Reik,W.
  TITLE     MERVL/Zscan4 Network Activation Results in Transient Genome-wide
            DNA Demethylation of mESCs
  JOURNAL   Cell Rep 17 (1), 179-192 (2016)
   PUBMED   27681430
REFERENCE   5  (bases 1 to 1829)
  AUTHORS   Jiang,J., Lv,W., Ye,X., Wang,L., Zhang,M., Yang,H., Okuka,M.,
            Zhou,C., Zhang,X., Liu,L. and Li,J.
  TITLE     Zscan4 promotes genomic stability during reprogramming and
            dramatically improves the quality of iPS cells as demonstrated by
            tetraploid complementation
  JOURNAL   Cell Res 23 (1), 92-106 (2013)
   PUBMED   23147797
  REMARK    GeneRIF: Zscan4f, in combination with the Yamanaka factors, not
            only remarkably reduced the DDR but also markedly promoted the
            efficiency of iPS cell generation.
REFERENCE   6  (bases 1 to 1829)
  AUTHORS   Falco,G., Lee,S.L., Stanghellini,I., Bassey,U.C., Hamatani,T. and
            Ko,M.S.
  TITLE     Zscan4: a novel gene expressed exclusively in late 2-cell embryos
            and embryonic stem cells
  JOURNAL   Dev Biol 307 (2), 539-550 (2007)
   PUBMED   17553482
REFERENCE   7  (bases 1 to 1829)
  AUTHORS   Zhang,W., Walker,E., Tamplin,O.J., Rossant,J., Stanford,W.L. and
            Hughes,T.R.
  TITLE     Zfp206 regulates ES cell gene expression and differentiation
  JOURNAL   Nucleic Acids Res 34 (17), 4780-4790 (2006)
   PUBMED   16971461
REFERENCE   8  (bases 1 to 1829)
  AUTHORS   Sharov,A.A., Piao,Y., Matoba,R., Dudekula,D.B., Qian,Y.,
            VanBuren,V., Falco,G., Martin,P.R., Stagg,C.A., Bassey,U.C.,
            Wang,Y., Carter,M.G., Hamatani,T., Aiba,K., Akutsu,H., Sharova,L.,
            Tanaka,T.S., Kimber,W.L., Yoshikawa,T., Jaradat,S.A., Pantano,S.,
            Nagaraja,R., Boheler,K.R., Taub,D., Hodes,R.J., Longo,D.L.,
            Schlessinger,D., Keller,J., Klotz,E., Kelsoe,G., Umezawa,A.,
            Vescovi,A.L., Rossant,J., Kunath,T., Hogan,B.L., Curci,A.,
            D'Urso,M., Kelso,J., Hide,W. and Ko,M.S.
  TITLE     Transcriptome analysis of mouse stem cells and early embryos
  JOURNAL   PLoS Biol 1 (3), E74 (2003)
   PUBMED   14691545
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK141250.1 and CN715580.1.
            
            On Nov 18, 2009 this sequence version replaced NM_001110316.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK141250.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849383 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-595               AK141250.1         3-597
            596-778             CN715580.1         374-556
            779-1829            AK141250.1         781-1831
FEATURES             Location/Qualifiers
     source          1..1829
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="7"
                     /map="7 7.0 cM"
     gene            1..1829
                     /gene="Zscan4f"
                     /gene_synonym="C330039H09Rik"
                     /note="zinc finger and SCAN domain containing 4F"
                     /db_xref="GeneID:665902"
                     /db_xref="MGI:MGI:3708485"
     exon            1..82
                     /gene="Zscan4f"
                     /gene_synonym="C330039H09Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            83..554
                     /gene="Zscan4f"
                     /gene_synonym="C330039H09Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             180..1700
                     /gene="Zscan4f"
                     /gene_synonym="C330039H09Rik"
                     /codon_start=1
                     /product="zinc finger and SCAN domain containing protein
                     4F"
                     /protein_id="NP_001103786.2"
                     /db_xref="CCDS:CCDS52015.1"
                     /db_xref="GeneID:665902"
                     /db_xref="MGI:MGI:3708485"
                     /translation="MASQQAPAKDLQTNNLEFTPTDSSGVQWAEDISNSPSAQLNFSP
                     SNNGCWATQELQSLWKMFNSWLQPEKQTKEQMISQLVLEQFLLTGHCKDKYALTEKWK
                     ASGSDMRRFMESLTDECLKPPVMVHVSMQGQEALFSENMPLKEVIKLLKQQQSATRPT
                     PDNEQMPVDTTQDRLLATGQENSENECNNSCNATEANVGESCSGNEMDSLLIMQKEQH
                     PEHEEGNVVCQFPHGARRASQGTPSHHVDFPSAPTTADVPMEEQPKDLSRENISEDKN
                     NCYNTSRNAATQVYSGDNIPRNKSDSLFINKRIYHPEPEVGDIPYGVPQDSTRASQGT
                     STCLQESLGECFSEKDPREVPGLQSRQEQLISDPVLLGKNHEANLPCESHQKRFCRDA
                     KLYKCEECSRMFKHARSLSSHQRTHLNKKSELLCVTCQKMFKRVSDRRTHEIIHMPEK
                     PFKCSTCEKSFSHKTNLKSHEMIHTGEMPYVCSLCSRRFRQSSTYHRHLRNYHRSD"
     exon            555..714
                     /gene="Zscan4f"
                     /gene_synonym="C330039H09Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            715..1829
                     /gene="Zscan4f"
                     /gene_synonym="C330039H09Rik"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agatgaagca gagccaaggc agggacacac agtgcctccc tgggcttctt ggcatcaccc
       61 ttgaagttca ctggagaaag agcttttaca gtacatccat caactgttag cattttcgta
      121 aagtcacaaa acagatatta aactactata gttgaatctt tcacaccatt gtcaccacaa
      181 tggcttcaca gcaggcacca gcaaaagacc ttcagaccaa caatttagag tttactccaa
      241 ctgatagttc tggtgtgcag tgggcagaag acatctctaa ctcaccaagt gctcagctaa
      301 acttttcccc aagtaacaat ggctgctggg caactcagga gctgcaaagt ctctggaaga
      361 tgttcaactc ctggttgcag ccagaaaagc agactaagga gcagatgatt tctcaactgg
      421 tcttggagca gtttctcctc actgggcact gcaaggacaa gtatgctttg actgagaagt
      481 ggaaagccag tggtagcgat atgaggagat tcatggagag tctgactgat gagtgcttga
      541 agcctcctgt catggtccat gtttcaatgc aaggacaaga agccctcttt tctgaaaaca
      601 tgccattaaa agaagtcatc aagcttttga aacaacagca atctgcaaca aggccaacac
      661 cagataatga gcagatgcca gtagacacca cacaagatag attattggcc acaggacaag
      721 aaaacagtga aaatgaatgc aacaactctt gtaatgctac tgaagcaaat gttggtgaaa
      781 gctgtagtgg aaatgaaatg gactcccttc ttattatgca gaaagaacag caccctgagc
      841 atgaagaggg gaatgttgtt tgtcaattcc ctcatggtgc cagaagagca agtcaaggca
      901 cccccagtca tcatgtagac ttcccgagtg ctccgactac tgccgatgtc cccatggagg
      961 aacaaccaaa ggatttatcc agagaaaaca tctctgagga caagaacaat tgctataaca
     1021 cttccagaaa tgcagctact caagtatata gtggtgataa tattcccagg aacaagtcag
     1081 actccctttt cattaacaag agaatatatc atcctgagcc tgaggtggga gatattcctt
     1141 atggagttcc tcaggattct acaagagcaa gtcaaggaac atctacatgc ctgcaagagt
     1201 cacttgggga atgtttttct gaaaaagacc ctagggaggt accagggttg cagtctaggc
     1261 aagagcagct tatctctgat cctgtccttc ttggtaagaa tcatgaggca aacttaccat
     1321 gtgaaagtca tcaaaagaga ttctgtagag atgccaaact atacaagtgt gaagaatgtt
     1381 ctaggatgtt caaacatgcc aggagccttt catcccacca gagaactcac ctgaataaga
     1441 agagtgaatt gctttgtgtc acctgtcaga aaatgttcaa acgagtctct gaccgccgaa
     1501 cccatgagat catacacatg ccagaaaagc ctttcaagtg cagcacatgt gaaaagtcct
     1561 tcagccacaa gaccaacctg aagtctcatg agatgattca cacaggagaa atgccttatg
     1621 tctgttccct atgtagccgt cgctttcgcc aatcatccac ttaccatcgt cacctgagga
     1681 attaccacag atctgactga actatctaac atcctcagca gagactggta gggcttcagc
     1741 ctcagtatgt catcttcaaa gagagaagaa tgttgcaagt aaattgtact gtcccaataa
     1801 tgatataaca tgcttgtgga ttgccactt
//
