LOCUS       NM_001013765            2276 bp    mRNA    linear   ROD 06-APR-2024
DEFINITION  Mus musculus zinc finger and SCAN domain containing 4C (Zscan4c),
            mRNA.
ACCESSION   NM_001013765 XM_142517
VERSION     NM_001013765.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2276)
  AUTHORS   Zhang,H., Jiang,J.C., Wu,Y.W., Yu,Y.S., Wang,H.N., Ding,N.Z. and
            Fan,H.Y.
  TITLE     The RNA ligase RNA terminal phosphate cyclase B regulates mRNA
            alternative splicing and is required for mouse oocyte development
            and maintenance
  JOURNAL   Development 149 (19) (2022)
   PUBMED   36178098
REFERENCE   2  (bases 1 to 2276)
  AUTHORS   Rong,Y., Zhu,Y.Z., Yu,J.L., Wu,Y.W., Ji,S.Y., Zhou,Y., Jiang,Y.,
            Jin,J., Fan,H.Y., Shen,L. and Sha,Q.Q.
  TITLE     USP16-mediated histone H2A lysine-119 deubiquitination during
            oocyte maturation is a prerequisite for zygotic genome activation
  JOURNAL   Nucleic Acids Res 50 (10), 5599-5616 (2022)
   PUBMED   35640597
REFERENCE   3  (bases 1 to 2276)
  AUTHORS   Sha,Q.Q., Zhu,Y.Z., Li,S., Jiang,Y., Chen,L., Sun,X.H., Shen,L.,
            Ou,X.H. and Fan,H.Y.
  TITLE     Characterization of zygotic genome activation-dependent maternal
            mRNA clearance in mouse
  JOURNAL   Nucleic Acids Res 48 (2), 879-894 (2020)
   PUBMED   31777931
REFERENCE   4  (bases 1 to 2276)
  AUTHORS   Ruebel,M.L., Vincent,K.A., Schall,P.Z., Wang,K. and Latham,K.E.
  TITLE     SMCHD1 terminates the first embryonic genome activation event in
            mouse two-cell embryos and contributes to a transcriptionally
            repressive state
  JOURNAL   Am J Physiol Cell Physiol 317 (4), C655-C664 (2019)
   PUBMED   31365290
REFERENCE   5  (bases 1 to 2276)
  AUTHORS   Zhang,W., Chen,F., Chen,R., Xie,D., Yang,J., Zhao,X., Guo,R.,
            Zhang,Y., Shen,Y., Goke,J., Liu,L. and Lu,X.
  TITLE     Zscan4c activates endogenous retrovirus MERVL and cleavage embryo
            genes
  JOURNAL   Nucleic Acids Res 47 (16), 8485-8501 (2019)
   PUBMED   31304534
  REMARK    GeneRIF: Zscan4c activates endogenous retrovirus transposable
            elements and cleavage embryo genes.
REFERENCE   6  (bases 1 to 2276)
  AUTHORS   Dan,J., Liu,Y., Liu,N., Chiourea,M., Okuka,M., Wu,T., Ye,X.,
            Mou,C., Wang,L., Wang,L., Yin,Y., Yuan,J., Zuo,B., Wang,F., Li,Z.,
            Pan,X., Yin,Z., Chen,L., Keefe,D.L., Gagos,S., Xiao,A. and Liu,L.
  TITLE     Rif1 maintains telomere length homeostasis of ESCs by mediating
            heterochromatin silencing
  JOURNAL   Dev Cell 29 (1), 7-19 (2014)
   PUBMED   24735877
REFERENCE   7  (bases 1 to 2276)
  AUTHORS   Zalzman,M., Falco,G., Sharova,L.V., Nishiyama,A., Thomas,M.,
            Lee,S.L., Stagg,C.A., Hoang,H.G., Yang,H.T., Indig,F.E.,
            Wersto,R.P. and Ko,M.S.
  TITLE     Zscan4 regulates telomere elongation and genomic stability in ES
            cells
  JOURNAL   Nature 464 (7290), 858-863 (2010)
   PUBMED   20336070
  REMARK    GeneRIF: Zscan4 is involved in telomere maintenance and long-term
            genomic stability in ES cells
REFERENCE   8  (bases 1 to 2276)
  AUTHORS   Nishiyama,A., Xin,L., Sharov,A.A., Thomas,M., Mowrer,G., Meyers,E.,
            Piao,Y., Mehta,S., Yee,S., Nakatake,Y., Stagg,C., Sharova,L.,
            Correa-Cerro,L.S., Bassey,U., Hoang,H., Kim,E., Tapnio,R., Qian,Y.,
            Dudekula,D., Zalzman,M., Li,M., Falco,G., Yang,H.T., Lee,S.L.,
            Monti,M., Stanghellini,I., Islam,M.N., Nagaraja,R., Goldberg,I.,
            Wang,W., Longo,D.L., Schlessinger,D. and Ko,M.S.
  TITLE     Uncovering early response of gene regulatory networks in ESCs by
            systematic induction of transcription factors
  JOURNAL   Cell Stem Cell 5 (4), 420-433 (2009)
   PUBMED   19796622
REFERENCE   9  (bases 1 to 2276)
  AUTHORS   Storm,M.P., Kumpfmueller,B., Thompson,B., Kolde,R., Vilo,J.,
            Hummel,O., Schulz,H. and Welham,M.J.
  TITLE     Characterization of the phosphoinositide 3-kinase-dependent
            transcriptome in murine embryonic stem cells: identification of
            novel regulators of pluripotency
  JOURNAL   Stem Cells 27 (4), 764-775 (2009)
   PUBMED   19350676
  REMARK    GeneRIF: the importance of Zscan4c in regulation of embryonic stem
            cell pluripotency
REFERENCE   10 (bases 1 to 2276)
  AUTHORS   Falco,G., Lee,S.L., Stanghellini,I., Bassey,U.C., Hamatani,T. and
            Ko,M.S.
  TITLE     Zscan4: a novel gene expressed exclusively in late 2-cell embryos
            and embryonic stem cells
  JOURNAL   Dev Biol 307 (2), 539-550 (2007)
   PUBMED   17553482
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AC166368.3.
            
            On Nov 17, 2006 this sequence version replaced NM_001013765.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC050218.1, SRR17253011.5452777.1
                                           [ECO:0000332]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-107               AC166368.3         161567-161673
            108-579             AC166368.3         162281-162752
            580-739             AC166368.3         164589-164748
            740-2276            AC166368.3         164833-166369
FEATURES             Location/Qualifiers
     source          1..2276
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="7"
                     /map="7 6.77 cM"
     gene            1..2276
                     /gene="Zscan4c"
                     /gene_synonym="Gm397; XM_142517; Zscan4d"
                     /note="zinc finger and SCAN domain containing 4C"
                     /db_xref="GeneID:245109"
                     /db_xref="MGI:MGI:2685243"
     exon            1..107
                     /gene="Zscan4c"
                     /gene_synonym="Gm397; XM_142517; Zscan4d"
                     /inference="alignment:Splign:2.1.0"
     exon            108..579
                     /gene="Zscan4c"
                     /gene_synonym="Gm397; XM_142517; Zscan4d"
                     /inference="alignment:Splign:2.1.0"
     CDS             205..1725
                     /gene="Zscan4c"
                     /gene_synonym="Gm397; XM_142517; Zscan4d"
                     /codon_start=1
                     /product="zinc finger and SCAN domain containing protein
                     4C"
                     /protein_id="NP_001013787.1"
                     /db_xref="CCDS:CCDS52012.1"
                     /db_xref="GeneID:245109"
                     /db_xref="MGI:MGI:2685243"
                     /translation="MASQQAPAKDLQTNNLEFTPTDSSGVQWAEDISNSPSAQLNFSP
                     SNNGCWATQELQSLWKMFNSWLQPEKQTKEQMISQLVLEQFLLTGHCKDKYALTEKWK
                     ASGSDMRRFMESLTDECLKPPVMVHVSMQGQEALFSENMPLKEVIKLLKQQQSATRPT
                     PDNEQMPVDTTQDRLLATGQENSENECNNSCNATEANVGESCSGNEMDSLLIIQKEQH
                     PEHEEGNVVCQFPHGARRASQGTPSHHVDFPSAPTTADVPMEEQPKDLSRENISEDKN
                     NCYNTSRNAATQVYSGDNIPRNKSDSLFINKRIYHPEPEVGDIPYGVPQDSTRASQGT
                     STCLQESLGECFSENDPREVPGLQSRQEQPISDPVLLGKNHEANLPCESHQKRFCRDA
                     KLYKCEECSRMFKHARSLSSHQRTHLNKKSELLCVTCQKMFKRVSDRRTHEIIHMPEK
                     PFKCSTCEKSFSHKTNLKSHEMIHTGEMPYVCSLCSRRFRQSSTYHRHLRNYHRSD"
     exon            580..739
                     /gene="Zscan4c"
                     /gene_synonym="Gm397; XM_142517; Zscan4d"
                     /inference="alignment:Splign:2.1.0"
     exon            740..2276
                     /gene="Zscan4c"
                     /gene_synonym="Gm397; XM_142517; Zscan4d"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gacacacagt gcctccctgg gcttcttggc atcacccttg aagttcaccg gagaaagcag
       61 tgaggtggag gaataggtaa actttccttc ctagtggtct tgaatgtctt ttacagtaca
      121 tccatcaact gttagcattt tcgtaaagtc acaaaacaga tattaaacta ctatagttga
      181 atctttcaca ccattgtcac cacaatggct tcacagcagg caccagcaaa agaccttcag
      241 accaacaatt tagagtttac tccaactgat agttctggtg tgcagtgggc agaagacatc
      301 tctaactcac caagtgctca gctaaacttt tccccaagta acaatggctg ctgggcaact
      361 caggagctgc aaagtctctg gaagatgttc aactcctggt tgcagccaga aaagcagact
      421 aaggagcaga tgatttctca actggtcttg gagcagtttc tcctcactgg gcactgcaag
      481 gacaagtatg ctttgacaga gaagtggaaa gccagtggta gcgatatgag gagattcatg
      541 gagagtctga ctgatgagtg cttgaagcct cctgtcatgg tccatgtttc aatgcaagga
      601 caagaagccc tcttttctga aaacatgcca ttaaaagaag tcatcaagct tttgaaacaa
      661 cagcaatctg caacaaggcc aacaccagat aatgagcaga tgccagtaga caccacacaa
      721 gatagattat tggccacagg acaagaaaac agtgaaaatg aatgcaacaa ctcttgtaat
      781 gctactgaag caaatgttgg tgaaagctgt agtggaaatg aaatggactc ccttcttatt
      841 atccagaaag aacagcaccc tgagcatgaa gaggggaatg ttgtttgtca attccctcat
      901 ggtgccagaa gagcaagtca aggcaccccc agtcatcatg tagacttccc gagtgctccg
      961 actactgccg atgtccccat ggaggaacaa ccaaaggatt tatccagaga aaacatctct
     1021 gaggacaaga acaattgcta taacacttcc agaaatgcag ctactcaagt atatagtggt
     1081 gataatattc ccaggaacaa gtcagactcc cttttcatta acaagagaat atatcatcct
     1141 gagcctgagg tgggagatat tccttatgga gttcctcagg attctacaag agcaagtcaa
     1201 ggaacatcta catgcctgca agagtcactt ggggaatgtt tttctgaaaa cgacccaagg
     1261 gaggtaccag ggttgcagtc taggcaagag cagcctatct ctgatcctgt ccttcttggt
     1321 aagaatcatg aggcaaactt accatgtgaa agtcatcaaa agagattctg tagagatgcc
     1381 aaactataca agtgtgaaga atgttctagg atgttcaaac atgccaggag cctttcatcc
     1441 caccagagaa ctcacctgaa taagaagagt gaattgcttt gtgtcacctg tcagaaaatg
     1501 ttcaaacgag tctctgaccg ccgcacccat gagatcatac acatgccaga aaagcctttc
     1561 aagtgcagca catgtgaaaa gtccttcagc cacaagacca acctgaagtc tcatgagatg
     1621 attcacacag gagaaatgcc ttatgtctgt tccctatgta gccgtcgctt tcgccaatca
     1681 tccacttacc atcgtcacct gaggaattac cacagatctg actgaactat ctaacatcct
     1741 cagcagagac tggtagggct tcagcctcag tatgtcatct tcaaagagag aagaatgttg
     1801 caagtaaatt gtactgtccc aataatgata taacatgctt gtggattgcc acttttatgt
     1861 tttgttttgt tttttatttt gtgtgtgtgt gtatgtaatt ttttgtctgt atttccatat
     1921 ttccacagca taagttatta gaatactttg ctgttaattc ttgagttgct tcttgctttt
     1981 agacagtgtc tttctggttg gcagctttat aaacctgtct ttctggcact agagtttcca
     2041 aacattttct gatctccact tttattctct acagtgttct tgacagaagc ctggcattcc
     2101 ctctgacatt ttctacatgt tggggttttc atcccaagtc ttagggttgc aagttaaatg
     2161 cattgcctct tcagacatct catgccatgt ctactgctta cagttcaaga atatttctct
     2221 acattactag aacgacgttc aaagtggaat aataaataaa taaataatca acaatt
//
