LOCUS       NM_001370934            2819 bp    mRNA    linear   ROD 07-AUG-2023
DEFINITION  Mus musculus zinc finger and SCAN domain containing 30 (Zscan30),
            transcript variant 2, mRNA.
ACCESSION   NM_001370934 XM_006526392
VERSION     NM_001370934.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2819)
  AUTHORS   Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, Magen
            A, Canidio E, Pagani M, Peluso I, Lin-Marq N, Koch M, Bilio M,
            Cantiello I, Verde R, De Masi C, Bianchi SA, Cicchini J, Perroud E,
            Mehmeti S, Dagand E, Schrinner S, Nurnberger A, Schmidt K, Metz K,
            Zwingmann C, Brieske N, Springer C, Hernandez AM, Herzog S, Grabbe
            F, Sieverding C, Fischer B, Schrader K, Brockmeyer M, Dettmer S,
            Helbig C, Alunni V, Battaini MA, Mura C, Henrichsen CN,
            Garcia-Lopez R, Echevarria D, Puelles E, Garcia-Calero E, Kruse S,
            Uhr M, Kauck C, Feng G, Milyaev N, Ong CK, Kumar L, Lam M, Semple
            CA, Gyenesei A, Mundlos S, Radelof U, Lehrach H, Sarmientos P,
            Reymond A, Davidson DR, Dolle P, Antonarakis SE, Yaspo ML, Martinez
            S, Baldock RA, Eichele G and Ballabio A.
  TITLE     A high-resolution anatomical atlas of the transcriptome in the
            mouse embryo
  JOURNAL   PLoS Biol 9 (1), e1000582 (2011)
   PUBMED   21267068
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2819)
  AUTHORS   McMahon AP, Aronow BJ, Davidson DR, Davies JA, Gaido KW, Grimmond
            S, Lessard JL, Little MH, Potter SS, Wilder EL and Zhang P.
  CONSRTM   GUDMAP project
  TITLE     GUDMAP: the genitourinary developmental molecular anatomy project
  JOURNAL   J Am Soc Nephrol 19 (4), 667-671 (2008)
   PUBMED   18287559
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC126807.4.
            
            On Jun 13, 2019 this sequence version replaced XM_006526392.3.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            CDS exon combination :: SRR11927935.3548483.1 [ECO:0000331]
            RNAseq introns       :: single sample supports all introns
                                    SAMN01164133 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-47                AC126807.4         113504-113550       c
            48-131              AC126807.4         107823-107906       c
            132-595             AC126807.4         97680-98143         c
            596-770             AC126807.4         97225-97399         c
            771-2819            AC126807.4         90083-92131         c
FEATURES             Location/Qualifiers
     source          1..2819
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="18"
                     /map="18 12.47 cM"
     gene            1..2819
                     /gene="Zscan30"
                     /gene_synonym="C230097I24Rik; Gm754; Zfp397os"
                     /note="zinc finger and SCAN domain containing 30"
                     /db_xref="GeneID:328918"
                     /db_xref="MGI:MGI:2685600"
     exon            1..47
                     /gene="Zscan30"
                     /gene_synonym="C230097I24Rik; Gm754; Zfp397os"
                     /inference="alignment:Splign:2.1.0"
     exon            48..131
                     /gene="Zscan30"
                     /gene_synonym="C230097I24Rik; Gm754; Zfp397os"
                     /inference="alignment:Splign:2.1.0"
     exon            132..595
                     /gene="Zscan30"
                     /gene_synonym="C230097I24Rik; Gm754; Zfp397os"
                     /inference="alignment:Splign:2.1.0"
     CDS             188..1795
                     /gene="Zscan30"
                     /gene_synonym="C230097I24Rik; Gm754; Zfp397os"
                     /note="isoform 1 is encoded by transcript variant 2; zinc
                     finger protein 397 opposite strand"
                     /codon_start=1
                     /product="zinc finger and SCAN domain-containing protein
                     30 isoform 1"
                     /protein_id="NP_001357863.1"
                     /db_xref="GeneID:328918"
                     /db_xref="MGI:MGI:2685600"
                     /translation="MFRETTALACHASKGQNRLNFVKVEEENGVWKQDLSLQGNLQSQ
                     EVFRQQFRQFGYSDFTGPREALNRLQKLCQQWLRPEEHSKEQILELLVLEQFMTILPM
                     ELKAWVQEHRPRSGEEAVTLLEELEREFDEPKHQDTAHGQEMICKETTLMGTSESLSS
                     PLQSLESHCKSEPQDPQIFHERDEATLPFRVDDEDSKMVTGKILTAKQEIIECVASVA
                     MASPGRLPRETSPVQIVEETMECLDNNEKQRGSDDTSNKTSQLSSQEDYFSLATFNKK
                     PPIEQNIFECNEGDRIPSQNLHGTTRPTTHTGKLLYACVDCGKTFCNRSKLIRHQRSH
                     TGERPYACKECGKAFGFRADLVRHQRIHSGEKPYKCCDCGKAFGSNTGLIRHRRIHTG
                     EKPYGCDECGRAFSQCSTLIQHKRIHSGEKHYSCDECGKAFIQSSALIQHKKIHSGDK
                     SYECTECGKAFWTSYVLREHQRIHTGEKPYKCNECGKSFNRSSALTVHQRTHSGEKPY
                     ECNECRKIFRHRSGLVQHQRTHTRVQL"
     exon            596..770
                     /gene="Zscan30"
                     /gene_synonym="C230097I24Rik; Gm754; Zfp397os"
                     /inference="alignment:Splign:2.1.0"
     exon            771..2819
                     /gene="Zscan30"
                     /gene_synonym="C230097I24Rik; Gm754; Zfp397os"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 aaggctttct ggcttccctc ggctgtgcgg gtaatctgcg gagcgaggta tcagactcag
       61 gtcagaaggt ttggtggcaa atgtactgtc ccatcctgtc cttccacgtg ctcccacaac
      121 tcccagacaa ggggttcttt ggatccacct cctctctgcc tcagcctttc agattattct
      181 gaccaggatg ttcagagaaa caacagcctt ggcctgtcat gcttcaaaag gacaaaatag
      241 gctcaacttt gtgaaagttg aagaagaaaa tggtgtttgg aagcaggact taagtcttca
      301 gggaaacctc cagagccagg aggttttccg tcagcagttt agacagtttg gttactctga
      361 tttcactggg ccccgggagg ctctgaaccg actgcagaag ctttgccagc agtggctgag
      421 gccagaggag cactctaagg agcagatcct agaattgctg gtgctagagc agttcatgac
      481 catcttgcct atggagctga aggcctgggt gcaagaacac aggcccagaa gtggagagga
      541 ggctgtgact ctgctggagg agctagagag agaatttgat gaacccaagc accaggacac
      601 agctcatggt caagaaatga tctgcaaaga aacgacactc atgggaacat cagagtctct
      661 aagtagtcca ctgcagtcct tggagagcca ttgcaagagt gaaccccagg atccccagat
      721 tttccatgag agagatgagg caaccctacc atttagggtt gatgatgaag atagcaagat
      781 ggtgactggg aaaatattga cagcaaagca agaaattatt gaatgtgttg catcagtggc
      841 catggcatct ccaggaagac ttcctaggga aacttctcca gtacagatag ttgaagaaac
      901 tatggaatgt ctggacaaca atgagaagca aagaggaagt gatgatacaa gcaacaaaac
      961 aagtcagctt tcttctcagg aagactattt cagtttggca acctttaaca agaaaccccc
     1021 tatagaacag aacatctttg agtgtaatga aggtgatagg atccctagtc aaaacttaca
     1081 tggtactaca cggcccacaa ctcacacagg gaaactgctc tatgcgtgtg tagattgtgg
     1141 gaaaactttt tgcaatagat caaaacttat tagacaccag agaagtcaca ctggagagag
     1201 accttatgca tgtaaagaat gtggaaaggc ctttggtttc agagcagacc ttgtaagaca
     1261 tcagagaatt cacagtggtg aaaaaccgta taaatgttgt gactgtggaa aagcttttgg
     1321 gagcaacaca gggctcatta ggcataggag aattcatact ggagagaaac cttatggttg
     1381 tgatgaatgt gggagagcct tcagccaatg ttctactctt attcagcata agaggattca
     1441 cagtggagaa aaacattata gttgtgatga atgtgggaaa gccttcatcc agagctctgc
     1501 ccttattcag cataagaaga ttcacagtgg agacaaaagc tatgaatgta ctgaatgtgg
     1561 taaggctttt tggacaagtt atgttcttag ggaacatcaa agaatccaca ctggtgagaa
     1621 accttataaa tgtaatgaat gtggaaaatc ctttaataga agctcagcac tcactgtgca
     1681 ccagagaact cactctgggg agaaacctta tgaatgtaat gaatgcagga aaatatttag
     1741 gcataggtca ggccttgtgc agcatcagag aacacatacc agagttcagc tctaagggtc
     1801 agtggttgta caattgtgaa atgcaaggaa ttcactttga aggtgagact ccacaaaaga
     1861 tagagaagtt tcctgatagc aggatttttg tctttccagc ccagttctgt aaaaagagat
     1921 ccacacaaaa tgtttgcata ttgaaagaag aattttatcc aaaacttgtc tacaaagaat
     1981 ggtattttct aagggggttg gggggggggg gaactgaccc atttctggat gaggactctc
     2041 accaatccgc tcttcatccc actctccact tcagatagaa ctgccattga gcaccttcat
     2101 gtaagtccat gattggggca cagatccgta agatctcttt ataaggtctg tctataaaag
     2161 tgtttatgcc tgacaggagt aggcatgttt taagagttac tgaaccctga aatgttgaat
     2221 tgaggctatg aaatgtcatg tcctggatca gtttaattaa tatctgagga gtattaatat
     2281 cttgctagtg cctttaaccc tgagattcct gttacagtgt acttccttat ttagaatctg
     2341 ctgggcttag ccactgggtg aataggcttg gtcattgtct tctccaaact aagggctaat
     2401 agaatataca tatttaatta ttatggttaa gtctgtggca ataactatgc cagttaaatt
     2461 caggagtctg ttggaagaaa tatcagagat tttatctgat ctatgagtta actagaaatt
     2521 tcttggatgt gatattaaga cctaaaatgt agaatcagca gcttggctaa tggcagaaca
     2581 gatgcagagg tcatagcaat acatggcatg ataaggaatg gacactcctg cttcatgcct
     2641 tcactctagt tcctgctgga gctgtttgtg accctagttc agaaatcagg ttgctttctt
     2701 ttcctgtttg taatagcctg agttgtataa cgtgaaatgt ttcacatcgt aaatgaccta
     2761 catgatcaag aagtattcag aattagcatg ataaaaaaat aaaaactggt gtttctgaa
//
