LOCUS       NM_001290819            5941 bp    mRNA    linear   ROD 05-AUG-2023
DEFINITION  Mus musculus zinc finger SCAN domains 29 (Zscan29), transcript
            variant 1, mRNA.
ACCESSION   NM_001290819 XM_006500481
VERSION     NM_001290819.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 5941)
  AUTHORS   Nishimura M, Yokoi N, Miki T, Horikawa Y, Yoshioka H, Takeda J,
            Ohara O and Seino S.
  TITLE     Construction of a multi-functional cDNA library specific for mouse
            pancreatic islets and its application to microarray
  JOURNAL   DNA Res 11 (5), 315-323 (2004)
   PUBMED   15747579
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK050477.1, AK031943.1, BM937526.1, AL845479.8, CV555944.1 and
            BP768866.1.
            
            [WARNING] On Oct 5, 2023 this sequence was replaced by
            NM_001290819.2.
            
            On Mar 20, 2014 this sequence version replaced XM_006500481.1.
            
            Transcript Variant: This variant (1) represents the longer
            transcript and encodes the longer isoform (a). The exon combination
            of this variant is inferred based on partial mouse transcript
            alignments and full-length orthologous human alignments.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            CCDS Note: The exon combination of this CCDS representation is
            inferred due to a lack of full-length transcript support for this
            gene in mouse. This representation is supported by tiling of
            partial mouse transcripts and by full-length orthologous human
            alignments (e.g., AK122788.1 or AF525399.1).
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR9219380.32459.1,
                                           SRR9219383.70193.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849380, SAMN00849382
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-290               AK050477.1         1-290
            291-1095            AK031943.1         274-1078
            1096-1430           BM937526.1         173-507             c
            1431-1431           AL845479.8         81331-81331         c
            1432-1559           BM937526.1         45-172              c
            1560-1769           AK050477.1         1355-1564
            1770-2361           CV555944.1         1-592
            2362-2652           AL845479.8         75789-76079         c
            2653-5419           AL845479.8         70825-73591         c
            5420-5941           BP768866.1         40-561              c
FEATURES             Location/Qualifiers
     source          1..5941
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="2"
                     /map="2 60.37 cM"
     gene            1..5941
                     /gene="Zscan29"
                     /gene_synonym="Zfp690"
                     /note="zinc finger SCAN domains 29"
                     /db_xref="GeneID:99334"
                     /db_xref="MGI:MGI:2139317"
     exon            1..1316
                     /gene="Zscan29"
                     /gene_synonym="Zfp690"
                     /inference="alignment:Splign:2.1.0"
     CDS             1002..3506
                     /gene="Zscan29"
                     /gene_synonym="Zfp690"
                     /note="isoform a is encoded by transcript variant 1; zinc
                     finger protein 690"
                     /codon_start=1
                     /product="zinc finger and SCAN domain-containing protein
                     29 isoform a"
                     /protein_id="NP_001277748.1"
                     /db_xref="CCDS:CCDS71123.1"
                     /db_xref="GeneID:99334"
                     /db_xref="MGI:MGI:2139317"
                     /translation="MAKPTRRGNGTSSESLRQRFRRFHYQEVAGPREAFSQLWELCCR
                     WLRPEVRTKEQIVELLVLEQFLTVLPVEIQNWVQKQCPENGEEAVTLVEDLERESGRP
                     GHSVTVSVKGQEMHSEKMTPLKSSQELLSVLQESVEPQPKGVSKKERARRPALRLQEQ
                     MNPKENLRPFQRSGFPFPKPNVVSRLDQGEPWISDLLSSKEKDVPKGNTGTSLLPSKR
                     ERTCWVEQGHWVFDDEKVVGVHWGYKETRTLLAILSQTEFYEALRNCHRNSQVYGAVA
                     GRLREYGFLRTLEQCRTKFKGLQKSYRKVKSGHPPDTCPFFEEMEALMSAQVISLPIN
                     GLEEAASHSAQAGSDAETEKPGQRDWQHEDGEEAIAERSDSDDPEATPQDPDNPPAPV
                     LFRSPSGVHWGYEETKTYLAILSETQFYEALQNCHRNSQLYGTVAERLWEYGFLRTPE
                     QCRTKFKSLQTSYRKVKNGQALETCPFFEEMDALVSAQVAAPPSDDQEKETVSCCLQR
                     TSEAEPEKQDEDTEEDSDDEDDTEIPPEAVITRAPVLFQSPSGFEAGFENEENSKRDI
                     SEEVQLHRTLLARSERKISHHVNQSKASKNKCSSESQWEKTQREEQRQLAFPEKNIGK
                     VLTYQRPGLEDRPYKYVKYGKSSGSNSHLRYPVSHEVENPYKCADCGKSFSRSARLIR
                     HQRIHTGEKPYKCLDCGKGFRDSSNFITHRRIHTGEKPYQCDECGKRFNQSSSLIIHQ
                     RTHTGEKPYQCEECGKSFNNSSHFNAHRRIHTGERPHVCPDCGKSFSKSSDLHAHHRT
                     HTGKKPYGCHDCGKCFSKSSALSKHRETHTREKLLS"
     exon            1317..1521
                     /gene="Zscan29"
                     /gene_synonym="Zfp690"
                     /inference="alignment:Splign:2.1.0"
     exon            1522..2196
                     /gene="Zscan29"
                     /gene_synonym="Zfp690"
                     /inference="alignment:Splign:2.1.0"
     exon            2197..2652
                     /gene="Zscan29"
                     /gene_synonym="Zfp690"
                     /inference="alignment:Splign:2.1.0"
     exon            2653..5929
                     /gene="Zscan29"
                     /gene_synonym="Zfp690"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gagagcggga ctgaggctag cccaggaggg gaagggatga gagtgagttg agaagctggt
       61 tgagagagac gcggcctggg gtgggccggc gggagtcctc aggacgcctt ggcagggtct
      121 gtggcatttt gaccgactgc cgacgtctcc cagagtgacc cggccggagg gaagaaaaca
      181 aagctggaac ttggcagccg ccgctgtgga gctgtgctcg aagcccacgg actcgcagca
      241 ccggcccgca tcggcctcgt tctcaggaga cccaccactg ccgcccctcg agcttcctcg
      301 cttcaccaac tcctgtaact ctcccctagt ccacctcaat ttagaagccc aagtcggctc
      361 ccccggtgcg cgaccttccc catctgtcgc cccggaactc ttgccgagtt cttacttcgt
      421 tcgggaggcg cgagcaagag acccagtgtt cggcacttga ctttggttcg gggtggaaat
      481 ttgtagtttg gtgttcaagg ggcggggcag acaccaggag cttctggaag gacggcggtg
      541 gttctagggg agaatagccg gcgctcgctg gacagaggct ttttgttgtc gttcgccaaa
      601 cgttttgacc gatttgatct ggggcgctaa tgatttacct gaggtgggag cgaagcggac
      661 agatttttct tttctctgca acttcctggg gatactctaa acgtcaccta gaaatgcagt
      721 ttttaaaagg tcattttcac cttgcctatt gatttgctgt cctgaaaagg tactgcctca
      781 gaaggccact tcgagcatat tgaaagtcag gccggctctg acaaggtttt aaacatgtaa
      841 agatactctc ctcagatagc gccatttctc tctactctag gataaaactc ctttttacag
      901 agagactcat ctgcaggtgt ttctccaagg gcatgcaaag atagtgtaat aagtcctaga
      961 acccagacag tgaggagaga aacggctttc tgctgtgaaa gatggccaaa cccactcgga
     1021 gaggaaatgg cacaagctct gaaagcttac gacagcgctt cagaagattc cattaccagg
     1081 aggtggctgg gccccgggag gctttcagcc aactatggga actttgctgt cggtggctaa
     1141 ggccggaggt gcggaccaag gagcagattg tagaattgtt ggtgctagag caattcctga
     1201 ctgtgctacc tgtggagatc cagaactggg tacagaagca atgtccagaa aatggagagg
     1261 aggcggtgac actggtggaa gatttagaaa gagagtctgg aagacctgga cattcggtca
     1321 cagtctctgt gaaggggcag gaaatgcact cggagaagat gacacccctg aaatcatcac
     1381 aggagttatt aagtgttctg caggagtcag tggaacccca gcccaagggt gtatccaaga
     1441 aagagagggc aagaaggcca gccctgagac tacaggagca gatgaaccca aaggagaatc
     1501 tcagaccttt tcaaaggagc ggatttccat ttcctaaacc caatgtggtg tccaggttgg
     1561 atcaaggaga gccatggatc tcagatctgc ttagctccaa ggagaaggat gtcccaaaag
     1621 gcaacacagg aaccagtcta ttaccatcca agagagagag aacctgctgg gtggaacagg
     1681 gtcactgggt atttgatgat gagaaggtgg tgggtgtgca ctggggctac aaagagacta
     1741 gaacactcct tgcaattctc agtcagactg aattttacga agcgctccga aactgtcaca
     1801 ggaacagcca agtgtatggg gctgtagctg ggaggcttcg tgaatatggt ttcctccgga
     1861 ctctggaaca gtgtcggacc aagttcaaag gccttcagaa gagctacagg aaggtcaaga
     1921 gtggtcatcc acccgacacc tgccccttct ttgaagagat ggaagccctg atgagtgccc
     1981 aggtcatttc attgcccatt aatggcctgg aagaggcagc ctcccattct gcccaggcag
     2041 gcagtgatgc tgagacggag aagccagggc agagggactg gcagcatgaa gatggagagg
     2101 aggctatagc tgaaaggtca gacagtgatg acccggaggc aaccccccag gaccctgaca
     2161 acccacctgc acctgtcctg ttccgaagcc caagtggtgt acactggggc tatgaagaaa
     2221 ccaagactta ccttgcaatt ctcagtgaga ctcagttcta cgaagccctc caaaactgtc
     2281 accgcaacag ccagttatat ggaacagttg ctgagagact gtgggaatat ggcttcctta
     2341 gaaccccaga gcaatgtcgt accaaattta aaagcctaca aaccagctat cggaaagtca
     2401 agaatggcca agcactagaa acctgcccct tctttgaaga aatggatgct ttagtgagtg
     2461 cccaagttgc tgccccacct agtgatgacc aggagaaaga aacagtttct tgttgcctcc
     2521 agagaaccag tgaggctgaa cctgagaagc aagatgagga cacagaagaa gattcagatg
     2581 atgaagatga tactgaaata cctccagagg ctgttataac ccgtgcccca gtcttattcc
     2641 agagccccag tggtttcgag gctggatttg aaaatgaaga aaattcaaaa cgggatattt
     2701 ctgaggaagt acagctgcat agaacattac ttgcaaggtc tgaaaggaaa atttcccatc
     2761 atgttaatca aagtaaagcg agtaagaata aatgctcatc agaaagccag tgggaaaaga
     2821 ctcaaagaga ggaacaaaga caactagcat tcccagagaa gaatataggt aaagtcctga
     2881 cctatcagag gccaggcttg gaagacagac cttataaata tgtcaagtat ggcaaaagct
     2941 ctggttcaaa ctcccatctc aggtatccgg tctcccatga ggtagagaac ccatataaat
     3001 gtgctgactg tgggaaaagc ttcagtcgga gtgcacgcct catcagacac caaagaatcc
     3061 acaccggaga aaaaccgtat aagtgtcttg actgtgggaa aggtttccgt gacagttcca
     3121 atttcattac ccatcggaga atccacacag gagaaaaacc gtatcagtgt gatgaatgtg
     3181 gaaaacgctt caaccagagc tcaagcctta taattcacca gagaacccac acaggagaaa
     3241 agccttatca gtgtgaagag tgtgggaaaa gcttcaataa cagttctcat ttcaatgcac
     3301 acaggaggat acacacagga gagagacccc atgtgtgtcc tgactgtggt aagagtttta
     3361 gtaagagttc tgacttgcat gcacatcaca gaacccacac aggaaagaaa ccttatgggt
     3421 gccatgactg tggcaagtgc ttcagtaaga gctctgccct tagtaaacac cgagagactc
     3481 atactcgaga aaagctgctg tcatagtcag tgcttaagcc agcccctgag gaagggcctt
     3541 ggaaactgta gcacttgcga agtcctttcc tgctttgtgc ccagctggcc taggaagcac
     3601 tcctcaggat tttttaccac tttatttctt gtgcttccca gatctagatg aggccaatgg
     3661 catcagcttc aagattaaaa agtagatttt ggtctgacct gatggtaatc cctctcccct
     3721 ctcggtgcct gtgttgttcc ctgagagaag atatggtagt atatgctgag agaagatatg
     3781 gtggtatatg ctgtggatct cacctgtatc cttcactcac accgtcattc agtgcacgtc
     3841 aattggaaaa cctgtttcag cagtttttca agaagctgtg agacttgggc catttcgctc
     3901 acttaaacct gtatatactc ttcatttatc tttaaagagt ttaaagtcca tcgtggttct
     3961 atcttttccc aagaatctgg agctggggat ctatctagct cagtggtaga gcacttgcct
     4021 agtatgcaca aggccttggg ttcaaacctc agacagaaga cagacacaca cacacacaca
     4081 cacacacaca cacacacaca cacacacaca aaacctgtac atgtgagggg tggggacaga
     4141 tagagtgaaa caatgtaagt tttctataaa cactgaattt cttagtttct tccagaatct
     4201 acaaggactc tggaagtata tcctacaata gattatactg catttatagc atcttgattt
     4261 ttttcctttc ttttccctcc ttgctgccgc tgcctcctcc tcctcctctc catctaaatt
     4321 gcacctgtcc cttgtggact agcagtcaaa agagcaaact agagatgtgg cgatagaaaa
     4381 agcagttaaa gatgcccaca ggagtcatct gtttctccta cactccacac acctagtata
     4441 gagtcatgca gccaatgggt gctcagtact aattgccatt tcctcaagta taggtaaaac
     4501 acactatacc ctaaatgaca aggaaagtgg tgatgctacc agtctgtaca cacacacaca
     4561 cacacacaca cacacacaca actatatata aataagagta tctatttaag cacaaaatta
     4621 caagttttta caatcaatgg tattgactta attcccacat attcatagat gtatgataaa
     4681 agccttgtac agtacaagtg aaaacaccct actgtgtcct tatactggaa aacagttaat
     4741 acatagacat aggcacaaat atatagttgc aacatttatt atttcttgaa aggcagggtc
     4801 tcactacgta gccctggcga cctgtagctt actatggaga tttcactgcc cttgatctca
     4861 gagatccgac tgcctcagtc ttcaaattgc aagtatagaa gtacaggtgt acatcaccat
     4921 gaaaactggc aactgggtta aagacattta ctaagcctag tagtgttact acacaagaca
     4981 tactctttaa cataacttgc tctgagaaaa gtctagaaag tcagcattca aaggaaggaa
     5041 agtaactggg taaattggag tggggcagac tgtccaaaac tagttgtaaa actgatgcta
     5101 ggtgggtgag aaatgggaaa acagtgaagc aaaagaggag aaaatataaa gctcactaaa
     5161 gcttgaagta ggaaaaaacc ttaagaatgc atgatagagc cgtagagtct gcagagaatc
     5221 aattagcaga gacagggaaa gctacaggga gaccctgagt tgtactgagc tgtggatact
     5281 gctgagagga aagcagcatg gctctgggag gtgagtttag gagactagct cctttgggag
     5341 ataaacagca gaaattactg tctattgaag atactttgat gagcaggtca gagaaaagat
     5401 gaccatggcc agatggccaa gacatggaat aactaatttt cacatttatt aagatctgag
     5461 atagtagcaa ggagaaagac tatcctaaaa tttattagga tgagtaatta attgtggttc
     5521 tggtactgag gaattgtaaa caaagaagta acattagcaa taaagggaaa atggtatctc
     5581 aattatgctg cctaagcaag caagaaggta caagaaaccc ctgtctaacg cagggcctca
     5641 ggatccgaga cggctttgga agtgaactgc aatgccaagg aagatgagat tattgtgaac
     5701 tgcaatgtca aggaagatga gattattatc tttagtatta atctgtctat gtatagtatt
     5761 gtggaaacag gcataagggt attagtagac agatggttcc aaatgtcttg tatcttaaac
     5821 tgcttctgtt tctcttccta taaagcaaaa taatgtttat acctagtctg cctctcaggg
     5881 atatcatgtt aataaatgtt atgccaataa agtgctctgt ttttcttcaa aaaaaaaaaa
     5941 a
//
