LOCUS       NM_001347491            4380 bp    mRNA    linear   ROD 06-AUG-2023
DEFINITION  Mus musculus zinc finger and SCAN domain containing 26 (Zscan26),
            transcript variant 1, mRNA.
ACCESSION   NM_001347491 XM_006516710
VERSION     NM_001347491.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 4380)
  AUTHORS   Gaudet P, Livstone MS, Lewis SE and Thomas PD.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BY139219.1, BX001068.7, CO040030.1, BC068174.1 and CF618633.1.
            
            [WARNING] On Dec 11, 2023 this sequence was replaced by
            NM_001347491.2.
            
            On Nov 29, 2016 this sequence version replaced XM_006516710.3.
            
            Transcript Variant: This variant (1) represents the longer
            transcript and encodes the longer isoform (a).
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR9219383.157506.1,
                                           SRR11927934.4235716.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression, longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-413               BY139219.1         1-413
            414-604             BX001068.7         6958-7148
            605-881             CO040030.1         56-332
            882-3444            BC068174.1         328-2890
            3445-4306           BC068174.1         2892-3753
            4307-4380           CF618633.1         1-74                c
FEATURES             Location/Qualifiers
     source          1..4380
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="13"
                     /map="13 7.8 cM"
     gene            1..4380
                     /gene="Zscan26"
                     /gene_synonym="Zfp187; Znf187"
                     /note="zinc finger and SCAN domain containing 26"
                     /db_xref="GeneID:432731"
                     /db_xref="MGI:MGI:3531417"
     exon            1..150
                     /gene="Zscan26"
                     /gene_synonym="Zfp187; Znf187"
                     /inference="alignment:Splign:2.1.0"
     exon            151..226
                     /gene="Zscan26"
                     /gene_synonym="Zfp187; Znf187"
                     /inference="alignment:Splign:2.1.0"
     CDS             212..1612
                     /gene="Zscan26"
                     /gene_synonym="Zfp187; Znf187"
                     /note="isoform a is encoded by transcript variant 1; zinc
                     finger and SCAN domain-containing protein 26; zinc finger
                     protein 187"
                     /codon_start=1
                     /product="zinc finger and SCAN domain-containing protein
                     26 isoform a"
                     /protein_id="NP_001334420.1"
                     /db_xref="CCDS:CCDS84009.1"
                     /db_xref="GeneID:432731"
                     /db_xref="MGI:MGI:3531417"
                     /translation="MALALIHPSKRAYSLAPLNLKEELQGFKVQGDRKGVGQEPLCKQ
                     FRQLRYEESTGPREVLRRLRELCRQWLRPETHSKEQILELLVLEQFLTILPRDLQVQV
                     LEHHPETGEELVGILEDLQLDRGKAGEQKDSAQRSRPTVLVGEPAPRREAREQPGCAL
                     PQKPEERGKETRSENGNLIAGTDSCGRMESSCTMTEPIEAQCEDLSLKKNPAMPKEKT
                     NSQCLETKERLVQNSGLIEHDRAHTGEMSWESVGSQSSVAADHQEISKDKGHPCQECG
                     KVFQRSSHLIRHQKIHLGEKPYQCKECGKVFSQNAGLLEHLRIHTGEKPYLCIHCGKN
                     FRRSSHLNRHQKIHSQDEPRECKECGKTFSRALLLTHHQRVHGRSKRHHCNECGKAFS
                     LTSDLIRHHRIHTGEKPFKCNVCQKAFRLNSHLDQHVRIHNEEKPYKCSECNEAFRQK
                     SGLFQHQRHHHKSKLA"
     exon            227..286
                     /gene="Zscan26"
                     /gene_synonym="Zfp187; Znf187"
                     /inference="alignment:Splign:2.1.0"
     exon            287..604
                     /gene="Zscan26"
                     /gene_synonym="Zfp187; Znf187"
                     /inference="alignment:Splign:2.1.0"
     exon            605..713
                     /gene="Zscan26"
                     /gene_synonym="Zfp187; Znf187"
                     /inference="alignment:Splign:2.1.0"
     exon            714..4363
                     /gene="Zscan26"
                     /gene_synonym="Zfp187; Znf187"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gtgtgactga ccctgcgacc agggcgaggg ggacgtacgg tgatcgggtt ccagcggaga
       61 gagaacccgc aaacttggga ctctcgagcg gagggtctgg ttgatacaca gaaactctcc
      121 acacctcgga gctgggagga ccagaagctg gagtgtctct caggatacag tcaagagaaa
      181 agtctccaaa acagagtgcc tgaagcaagg gatggcactg gccttgatcc accctagcaa
      241 gcgtgcatac tctttggctc ccctgaatct gaaggaggag cttcagggat tcaaagttca
      301 aggggacaga aaaggcgttg ggcaggagcc attgtgcaaa cagttcaggc agctgcgcta
      361 tgaggaaagc actggacctc gagaggtttt acgccggctc agggagctct gcagacagtg
      421 gctgcggcct gagacccaca gcaaggagca gatcctggag ctgctggtac tggagcagtt
      481 cctgaccatc ctgccaagag atctgcaggt ccaggtgctc gagcaccacc cagagactgg
      541 ggaggaactg gtgggaatac tggaagattt gcagctggac cgtggaaaag caggagagca
      601 gaaggactca gcccaaagaa gcagaccaac ggtgctggtt ggcgagccag cccctcgcag
      661 ggaagcacgg gagcagcctg ggtgtgcgct tcctcagaag cctgaggaga gaggtaaaga
      721 gacaaggagt gagaatggga atctcattgc agggacagac tcttgtggaa gaatggaatc
      781 atcttgtacc atgactgaac ccattgaggc ccagtgtgag gacctgagct tgaaaaagaa
      841 tccagccatg cccaaggaaa aaactaacag ccaatgcttg gaaactaagg agagacttgt
      901 tcagaactca ggcctgattg aacatgacag ggcacataca ggagaaatgt cctgggaatc
      961 tgtaggatct cagagttctg ttgctgctga ccatcaggaa atctctaaag acaaaggtca
     1021 tccctgccaa gagtgtggga aagtctttca gagaagttca cacctcatca gacatcagaa
     1081 aatccatctt ggggagaagc cttaccagtg caaagagtgt ggaaaagtct ttagccagaa
     1141 tgcaggtctt ttggagcatc tcaggatcca tactggagaa aaaccctatc tgtgtatcca
     1201 ttgtggaaag aacttcaggc gaagctctca tcttaatcga caccaaaaaa ttcacagtca
     1261 ggatgagccc cgagaatgca aggagtgtgg gaaaaccttt agtcgggccc tcctcctcac
     1321 ccaccatcag agagtccatg gtcgttccaa aagacatcac tgtaatgagt gtgggaaagc
     1381 cttcagcttg acctccgacc ttattcgaca tcataggatt cacactggag aaaaaccttt
     1441 caaatgtaat gtgtgtcaga aagctttccg cctaaattca cacttagatc agcatgttag
     1501 aatccacaat gaagaaaaac cctacaagtg cagtgaatgc aatgaagcct tcaggcagaa
     1561 gtctggtctc tttcagcatc agagacatca ccataaaagc aaactggctt gatgaggttc
     1621 tctgtttgaa acatggaaat gttacattga taagcaaaca gcgccttttg aaagaactca
     1681 cgacggcttc aggattcttg gaagccattt gcctccgttg tgtccctctc ttggctttac
     1741 ttaaagtcat aattagacta taataattta ccagaatagc agaatcagag ttaaacaaat
     1801 attcactaca gagcttctca gagctttcag tgtgataagt acttgattat gtatctctta
     1861 agtattagct ttatgtgtga atgaagtgtt tgaaatcagt aagtcaagtg cctatagatt
     1921 tatacaggac aagatcaagc tgatattttt gtaagtactg tagcaacagg ctcctaaaac
     1981 ataaaattaa tgagggttgg ggatatgctc agtggtttaa ccaagttgct atgcaagtgg
     2041 aaggactgtt ttggatcccc agcacccatg taaagtcaaa tgagtatgtg gccagcctgt
     2101 ggcctgtggt cccacccctc aggtggcaaa aatgggatct ttctagcaag ctggctagcc
     2161 agactagctg tatcagcaaa ctttggactc aggggaggga gtttggagag cagtcggtgg
     2221 agttcttgag gaagactcct gatgataatc taagtgcaca tgtgtccata cgtatgtaga
     2281 gccatacctg caaacatcat acatgtgaaa agacaaatcc taaggagcta gagttagcag
     2341 ttaacatacc tgctcttgca gaggacccat ccattttcag ttcctagcac ctccatagca
     2401 cagcgtctca cagttccagt tctggggatc tgctagcctt ctcaggcttc tgtacacagt
     2461 ggtccacaga aactggtgga cacacacaca caactggtaa aatattttta agcccaaaat
     2521 aaatctaata atgcttagaa atacacatcc tcaagggtct aacgtaggtt aactgaacat
     2581 tttccctgtt aggttcacac aaacactggc ttcatatcca ctttaccttt gtaccatcaa
     2641 tgaatgcatt tctgaaagct tttgctgttt aactatagaa cctaccctta ggattagctc
     2701 atgtcatttt acatttcctg cccattttaa ccacagtatc acagtgtttc aaattataaa
     2761 tcaaagtttt acctaaacta tgcaagagac tttgagtcat ttgagtgaac tgtgttgaag
     2821 tattctaagc agcgacctcc ttactgggca gcaacagtgc cagtacagtg actgcttgaa
     2881 ggacaccttt tttcatgaat gtcccatggg gggaaatggg gttttccccc tttgatacca
     2941 atgatgcaaa tttaaatgct acttgttttg atattatttt gaccatgcaa atcaaatcag
     3001 ctcggagaga tcatggccat caggtcatat tgactgtctt gctagtgatg aaaagtaata
     3061 agcttggagt cttcccaagc ccagcacccg actgctaaac atggcttatg gttggtaatt
     3121 gcacagggtg tacttctcag ggaaagggct tcttaagtta tgccgctttg ggaagagaag
     3181 gggacccttg tactgactac aacttggttt cactacactt gacttacaaa taagccaaga
     3241 acttagcaac atagaaatgc ttatttttct tgtccgatag aaaaggatag tcagtccaaa
     3301 acagatccat ggtaaaccta gtcagcttgc tgccagtcat gtctaaggag gggacaggcc
     3361 aaggactgct aggcacctag gtgcaattct gacattaatc ttctgtttca tgcccttttt
     3421 tttttttttt tttttttttt ttttggtttt tcgagacaag atttctctgt gtagtcctgg
     3481 ctgtcctgga actcactttg tagaccaggc tggcctcgaa ctcagaaatc cgcctgcctc
     3541 tgcctcccga gtgctgggat tacaggcgtg tgccaccact cctggctcgt ttcatcccct
     3601 tttaaccaaa ctttgctctg cacaaaataa ggccctcttc ctttgttaag atttgaccta
     3661 agatacactc taagcaaaat tggggagagc tgcacaaagg gactggctga actgagaaga
     3721 acctctcttg gaccttttgc ccacactttg catgtgatag ttgcaacttc agcagtcata
     3781 tggccttaaa aactgatggc atggaccaag gttaggtcct caacaccacc caaaataaca
     3841 gtgttagcgt gtgatcagtc tccttcatgt ttaactccga tccacaccaa acgtgcatgt
     3901 aacaggcatt gtaacccttg taattcctaa gcctcagaag aaacacagtc ttagaacatg
     3961 ctttacatct ctactgtgga acatcctttt atgcatcact gtttgtgtga aagtgatgtt
     4021 ccttttctgg cctttctctt agcttctcct tttacttcca aacagcatgg cccttaaaaa
     4081 ttagagaact atcaaaattt taaatgcaca ttattcttcg tcagtttgtg tgtgtaatat
     4141 ttactcaaca aatatattta aagcaacata aaaacataat tattgatagt gtaaagagaa
     4201 tacttttcta tggaaataat gatattgaca gtattgtaaa cagtctgtaa agtgttaata
     4261 aagtttcaaa gtaatttttg aataaaatta aagctataaa aagaaagtaa agatttttaa
     4321 atggtgtttc ctacagcatt acttaataaa gaatataact aaaaaaaaaa aaaaaaaaaa
//
