LOCUS       NM_001081431            2915 bp    mRNA    linear   ROD 05-AUG-2023
DEFINITION  Mus musculus zinc finger and SCAN domain containing 25 (Zscan25),
            transcript variant 1, mRNA.
ACCESSION   NM_001081431 XM_006504854 XM_991782
VERSION     NM_001081431.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2915)
  AUTHORS   Gaudet P, Livstone MS, Lewis SE and Thomas PD.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 2915)
  AUTHORS   Hansen GM, Markesich DC, Burnett MB, Zhu Q, Dionne KM, Richter LJ,
            Finnell RH, Sands AT, Zambrowicz BP and Abuin A.
  TITLE     Large-scale gene trapping in C57BL/6N mouse embryonic stem cells
  JOURNAL   Genome Res 18 (10), 1670-1679 (2008)
   PUBMED   18799693
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC127411.3.
            
            On or before Jun 5, 2020 this sequence version replaced
            XM_006504854.4, NM_001081431.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR7345562.3919334.1,
                                           SRR11927938.4242901.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-157               AC127411.3         77176-77332         c
            158-586             AC127411.3         74023-74451         c
            587-788             AC127411.3         71294-71495         c
            789-880             AC127411.3         70404-70495         c
            881-1004            AC127411.3         69386-69509         c
            1005-2915           AC127411.3         65563-67473         c
FEATURES             Location/Qualifiers
     source          1..2915
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="5"
                     /map="5 85.17 cM"
     gene            1..2915
                     /gene="Zscan25"
                     /gene_synonym="EG666311; Zfp498"
                     /note="zinc finger and SCAN domain containing 25"
                     /db_xref="GeneID:666311"
                     /db_xref="MGI:MGI:3647079"
     exon            1..157
                     /gene="Zscan25"
                     /gene_synonym="EG666311; Zfp498"
                     /inference="alignment:Splign:2.1.0"
     exon            158..586
                     /gene="Zscan25"
                     /gene_synonym="EG666311; Zfp498"
                     /inference="alignment:Splign:2.1.0"
     CDS             203..1834
                     /gene="Zscan25"
                     /gene_synonym="EG666311; Zfp498"
                     /note="isoform 1 is encoded by transcript variant 1; zinc
                     finger protein 498"
                     /codon_start=1
                     /product="zinc finger and SCAN domain-containing protein
                     25 isoform 1"
                     /protein_id="NP_001074900.1"
                     /db_xref="CCDS:CCDS39387.1"
                     /db_xref="GeneID:666311"
                     /db_xref="MGI:MGI:3647079"
                     /translation="MLKERLEMAGDPQQQMGAPVVKLEKELPWGRGGEDSSPEAFRLR
                     FRQFRYQEAAGPQEALRELQELCRRWLRPELHTKEQILELLVLEQFLTILPREFYTWI
                     REHSPDSGKALVAMVEELMGSTEAKAVPCHAQGEQLVTALGGASWQSGIHLGPVEVKP
                     EWGIPQGEGVQSLGPSTTEQLSQGPGDGTQAFQEQALPILHVGPGLPSVSARDQEMAA
                     GFLAATSQGLGPFKDMTLGFPEEEWRHVAPAQIDCFGEYVDSQDCGVLPGAGSKEKEA
                     KPQQEDLKRAFVGLTSDGFGEADIQIPGPGGTCEQEPGSSGTSLPGLPAPQHGVPLPD
                     TLNTHNSFWKPFQCPECGKGFSRSSNLVRHQRTHEEEKSFGCVECGKGFTLREYLTKH
                     QRTHLGKRPYVCGECWKTFSQRHHLEVHQRSHTGEKPYKCSDCWKGFSRRQHLLVHRR
                     THTGEKPYTCECGKSFSRNANLAVHRRAHTGEKPYGCQVCGKRFSKGERLVRHQRIHT
                     GEKPYHCPACGRSFNQRSILNRHQKTQHRQEPPVQ"
     exon            587..788
                     /gene="Zscan25"
                     /gene_synonym="EG666311; Zfp498"
                     /inference="alignment:Splign:2.1.0"
     exon            789..880
                     /gene="Zscan25"
                     /gene_synonym="EG666311; Zfp498"
                     /inference="alignment:Splign:2.1.0"
     exon            881..1004
                     /gene="Zscan25"
                     /gene_synonym="EG666311; Zfp498"
                     /inference="alignment:Splign:2.1.0"
     exon            1005..2915
                     /gene="Zscan25"
                     /gene_synonym="EG666311; Zfp498"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 acccacttcc ggtccgcgca ggcctgggca ggtgctaagc gcgcagtcaa ggccccgggc
       61 aggccgggtc ggggcggggc tggacggagc aagctgctgc tcggcggggc agcagcgggc
      121 caggggtcgt aggctccacg cacagcggtg atctcagacg ggtcaccctt gttgtcatcc
      181 tcagccttgc cggagcttga agatgctgaa agagcgtctg gagatggcag gagatcctca
      241 gcagcagatg ggtgctccag tggtcaaact ggagaaggag ctgccatggg gcaggggagg
      301 ggaggactcg agtcccgagg catttcggtt gaggtttcgg cagttccgct accaagaggc
      361 tgctggtccc caggaagccc tcagggagct ccaagagctc tgtcgccggt ggctgaggcc
      421 ggagctgcac accaaagagc agatcctgga gctgctggtg ctggagcagt tcctcaccat
      481 cctgccccga gagttctaca cctggatccg ggaacacagc ccagacagcg gcaaggctct
      541 ggtggccatg gtggaggagc tgatggggag cacggaggcc aaggcggttc catgccatgc
      601 ccagggagag cagctggtca cagcccttgg cggagcatcg tggcaatcag gcatccacct
      661 ggggccggta gaagtcaaac ctgagtgggg gataccccag ggggaaggag ttcagagcct
      721 aggcccaagc accacagaac agctgagcca gggccctgga gatgggacac aggccttcca
      781 ggaacaagca ttgcccattc ttcatgtggg tccagggctt ccctctgtga gtgccagaga
      841 ccaagagatg gctgctggat tccttgcagc cacgtcccag ggtctggggc catttaaaga
      901 catgactttg ggttttcctg aggaggaatg gaggcatgta gccccagctc agattgactg
      961 ctttggagaa tacgtggact cacaggattg tggggtcctt ccaggtgctg ggagcaagga
     1021 gaaggaggct aagccccagc aggaagacct gaagagagca tttgttgggt tgacttccga
     1081 tggctttgga gaagccgaca tccagattcc tggaccaggg ggcacctgtg agcaggagcc
     1141 tgggagctct gggaccagtc tgcctgggct tcctgctcct cagcatgggg tacccctgcc
     1201 tgacaccctc aacacccaca attctttctg gaagcctttc cagtgccctg agtgtggaaa
     1261 aggctttagt cggagctcca accttgttag gcaccagcgg acccatgaag aagaaaaatc
     1321 ctttggctgt gtggagtgtg ggaaaggttt caccctgagg gaatacctca ccaagcatca
     1381 gaggacccac ctgggcaaga ggccctatgt gtgtggcgag tgctggaaga ccttcagcca
     1441 gaggcatcac ctggaggtgc accagcgtag ccacactggg gagaagccct acaagtgctc
     1501 agactgctgg aagggcttca gccggaggca gcatctgctg gtgcatcgca ggacgcacac
     1561 aggggagaag ccctacacct gcgagtgtgg caagagtttc agccggaacg ccaacctggc
     1621 agtgcaccgg cgtgcccata ctggggagaa gccctatggc tgccaggtgt gcggcaagcg
     1681 cttcagcaag ggggagcgac tggtgcgaca ccagaggatc cacactggtg agaagcccta
     1741 tcactgccca gcctgcggcc gcagcttcaa ccagaggtcc atcctcaacc gtcatcagaa
     1801 gacccagcat cgccaggagc ctccggtgca gtgagcctac taagggaaca gctctgccat
     1861 aggagcgact tgtgttgcac cgagtggtct gggcagtgcc cagtgaggga cagcagaacg
     1921 tgctcaagta ggaggagggc agagcctgga gtatgtaggg gaagctggca gaaggcccac
     1981 agtttccctc acctcttaca gggaaacact atcctgagct tcaggttttc ttatccttcc
     2041 tcccacagtg gggatgtgaa cccacctcct gagcaagttt agaggaaaag gcagaatttt
     2101 attgcaaata ggcagcttga agcttgtttt cttctttctt tcccctccct ccccctccct
     2161 ccccctccct cccccctccc tccctccctc tctcccttct tccttccctc tctctccctt
     2221 ttccgttttt tctctttttt tttgagctaa ggtctcatat tatctaagct tgtttcagac
     2281 tacctgtgta gctaaagatg atcttgaacg cctgattctc ctgtttccac cgtcccagtg
     2341 ctgtgattgc aggaatgtgc caccatgcct ggtttatgtt atgttggaga tgaaatccag
     2401 ggtttgtgca tgctaggtga ggtactctac tgactgaggg atgttcccag ccttgaagct
     2461 cttcttgtct gtgagatcat tagcccaggc aaccctccct ccagctgtct ttcatttaca
     2521 aatatttatt aaacatctac tgtgctcctg gctctcagaa tgccttggga atggaaccaa
     2581 tgataccgtg gagtgtgtga gcaaagctgg aacagagctt gtaagtatcc caaagcacgt
     2641 gttgttgcaa gtgccacacc agaacttctg cacactccgt cctgggccag cctgtcctgt
     2701 gtgggccctc acatactctc cacctcagga ggggacttct ctcataaagc ctcgtttatg
     2761 tcactttctt ggcagcctta ttgtcatgga ctggaacatt ctactctcat ctgtaaagcc
     2821 ttcccatctc attattcctt gcactaacca cagccactag gaaattaata ttttgctact
     2881 gatcactgaa taaacgtgaa aatattttaa gacaa
//
