LOCUS       NM_001290436            3507 bp    mRNA    linear   ROD 06-AUG-2023
DEFINITION  Mus musculus zinc finger and SCAN domain containing 22 (Zscan22),
            transcript variant 1, mRNA.
ACCESSION   NM_001290436 XM_006539797
VERSION     NM_001290436.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3507)
  AUTHORS   Yokoyama S, Ito Y, Ueno-Kudoh H, Shimizu H, Uchibe K, Albini S,
            Mitsuoka K, Miyaki S, Kiso M, Nagai A, Hikata T, Osada T, Fukuda N,
            Yamashita S, Harada D, Mezzano V, Kasai M, Puri PL, Hayashizaki Y,
            Okado H, Hashimoto M and Asahara H.
  TITLE     A systems approach reveals that the myogenesis genome network is
            regulated by the transcriptional repressor RP58
  JOURNAL   Dev Cell 17 (6), 836-848 (2009)
   PUBMED   20059953
REFERENCE   2  (bases 1 to 3507)
  AUTHORS   Stryke D, Kawamoto M, Huang CC, Johns SJ, King LA, Harper CA, Meng
            EC, Lee RE, Yee A, L'Italien L, Chuang PT, Young SG, Skarnes WC,
            Babbitt PC and Ferrin TE.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BB849089.1, BB871911.1, AC107704.8, AK052559.1 and AK163694.1.
            
            On Mar 13, 2014 this sequence version replaced XM_006539797.1.
            
            Transcript Variant: This variant (1) represents the longest
            transcript and encodes the longest isoform (a). Variants 1, 2, and
            3 all encode the same isoform (a).
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR7345562.4507046.1, BU512018.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-39                BB849089.1         2-40
            40-107              BB871911.1         1-68
            108-108             AC107704.8         116886-116886
            109-370             BB871911.1         70-331
            371-2663            AK052559.1         329-2621
            2664-3507           AK163694.1         2153-2996
FEATURES             Location/Qualifiers
     source          1..3507
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="7"
                     /map="7 7.68 cM"
     gene            1..3507
                     /gene="Zscan22"
                     /gene_synonym="D530006B18Rik; Hkr2"
                     /note="zinc finger and SCAN domain containing 22"
                     /db_xref="GeneID:232878"
                     /db_xref="MGI:MGI:2443312"
     exon            1..172
                     /gene="Zscan22"
                     /gene_synonym="D530006B18Rik; Hkr2"
                     /inference="alignment:Splign:2.1.0"
     exon            173..657
                     /gene="Zscan22"
                     /gene_synonym="D530006B18Rik; Hkr2"
                     /inference="alignment:Splign:2.1.0"
     CDS             255..1745
                     /gene="Zscan22"
                     /gene_synonym="D530006B18Rik; Hkr2"
                     /note="isoform a is encoded by transcript variant 1;
                     GLI-Kruppel family member HKR2"
                     /codon_start=1
                     /product="zinc finger and SCAN domain-containing protein
                     22 isoform a"
                     /protein_id="NP_001277365.1"
                     /db_xref="CCDS:CCDS20816.1"
                     /db_xref="GeneID:232878"
                     /db_xref="MGI:MGI:2443312"
                     /translation="MAIPKSPLSPVLWEQDSFLQVKVKEEEEASDSPSQESSPSFTAH
                     PEAARLRFRHFRYEEASSPHQALAQLRELCCQWLRPESSSKEQMLELLVLEQFLGALP
                     PEIQAWVGAQCPKSGKEAAVLVEDMTQLLDRRGWEPGVEREEASCKQSNTDELEPPKM
                     ATETVMGSVLPKSTLAHTCKPESHSESQPEFLGALWMKSTAQEMDFRKALGPHMDAPK
                     DQPGHESNTSGNGSNMWPNFPSQDKASSEEKFGPLLDNETVPPDTCSEKKSSKDSECL
                     KTFQNTSALEAHQKSHSQKTPYACTECGKVFSRSTHLVQHQVVHTGAKPHACKECGKA
                     FSRVAHLTQHLRIHTGEKPYKCEECGKTFSRSTHLTQHQRVHTGERPYECDTCGKAFS
                     QSTHLTQHQRIHTGEKPYRCDVCGKAFSDCSALVRHLRVHSGEKPYQCKDCPKAFAQS
                     SSLIEHQRTHTGEKPYKCSDCGKAFSRSSALMVHLKIHITVTRSTP"
     exon            658..3507
                     /gene="Zscan22"
                     /gene_synonym="D530006B18Rik; Hkr2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cacgaaggcg catgtgtgtg cgtcaccagg acgcctttgg aagtgtccgc tgggagttct
       61 ggagacccgg tgagcgcggg aaccctggca tggaggggtg agggctgcga acgcccacgg
      121 caaacctaac ggcctgtgag tacaggacag agtgtgtcac ggctgatgga gtatggtgat
      181 gaagctctaa cgtttcttca gccccaattc tgaggcttga gtcgtccctg tgactcactg
      241 aattcttctg cccaatggcc atccccaaga gccctctgag cccagtactc tgggaacagg
      301 atagcttcct tcaggtgaag gtgaaagagg aggaagaagc tagcgactcc ccgagccagg
      361 aatccagccc tagctttact gcccaccctg aggctgcacg attgcgcttc aggcacttcc
      421 gctatgagga ggcatccagc cctcatcagg cgctagccca actgcgagag ctatgttgcc
      481 agtggctgag gccagagtcg tcctccaaag aacagatgct ggagttgctg gtgctggagc
      541 agttcctggg tgcgctgccc cctgagatcc aggcctgggt gggtgctcag tgcccaaaga
      601 gtggaaagga ggctgccgtt ctggtggagg atatgactca actgctggac aggagaggat
      661 gggagccagg agtggaacgt gaagaggcaa gttgcaaaca gagcaataca gatgaattgg
      721 agccaccaaa aatggcgact gaaactgtca tgggaagcgt tttgccaaaa tctacccttg
      781 cccacacttg taaacctgag agccactcag agagccagcc agaattccta ggagcactct
      841 ggatgaagtc tactgcccaa gagatggatt tcagaaaagc tctggggcct cacatggatg
      901 cccccaaaga ccagcctggc catgagtcta acacctcagg aaacggttcc aacatgtggc
      961 ccaacttccc ttcccaagac aaggcttctt cagaggagaa atttggccca ttacttgata
     1021 atgagacagt gcctccagat acttgctcag agaagaaatc ctccaaggat agtgaatgtt
     1081 tgaaaacatt ccagaacact tcagctctgg aggcccacca gaagagccac tctcagaaga
     1141 cgccctatgc ctgtactgag tgtgggaagg tattcagtcg gagcacccac cttgtccaac
     1201 accaggttgt tcacacagga gcaaagcccc atgcgtgtaa agagtgtggt aaagccttca
     1261 gtcgcgttgc ccacctgaca cagcacctga ggattcatac tggggagaag ccttataaat
     1321 gtgaggaatg tggtaaaacc ttcagccgca gcacccacct cacgcagcac cagcgagtac
     1381 acacaggcga gcggccctac gagtgtgata cttgcggcaa agccttcagc cagagcaccc
     1441 acctgacaca gcaccagcgc atccacaccg gggagaagcc ctacaggtgt gatgtgtgtg
     1501 ggaaagcctt cagtgactgt tcagctctgg tccggcacct gagagtccac tctggagaga
     1561 agccttatca atgtaaggac tgcccgaagg ccttcgcaca aagctcctcc ctcattgagc
     1621 accagcgcac tcacacaggt gaaaagcctt ataaatgcag tgactgtggg aaagctttta
     1681 gccgcagctc agctctcatg gtgcacctaa agatccatat caccgtgact cgaagcaccc
     1741 cttagagtac agcacagcct ccctgagagg attgacatct aagaaatctg ataattgtgc
     1801 tacccagtgt ctaaggggtt atctgggaac acctctacat ttgaggtccc agaggaaatc
     1861 ccctaatgaa cacggattca gaccaattgg tgaagcttct agaagcttcc tactgccctc
     1921 tgtatcccac tcaggctggt cccagagaga agatactaaa ctgatgatct gcattatttc
     1981 ttggaaccag agcaagtaaa gccaggtgtc tttccaggct cagatgcccc aagatcctcg
     2041 aggcaggaag accccaagct tcaggttctc acatagttac tgttcttgcc ggttccttgc
     2101 tggtcagcct agaatggccc actctgtgcc ttcgtacctg cttccccaca atattacttt
     2161 atgcctaact ccaagacaga cttgggaggc tgcctctcca tgctatccct ctcatgttct
     2221 ccctgcttta atccacagtg tctgtcttct cctcccacgt cttccttcca catctcaggc
     2281 tccagccctg tggattcacc gcaggctcat ctctaatcta gcccctcctg cagtatcacc
     2341 tcctgtgagc tcaccttggg cctcccactg gatttttatc agggctctcc tttctcacct
     2401 cttcctgcct tcattccatc cccacccact ttcttcctgg cgcatctctt tctgctaccc
     2461 agatcacagt gaatcattcc atgacacaat atgttgtcag tgagtcacct cttcaacaaa
     2521 caagcatgtc aggatatatg tcattttggt ccaagcaatt actctaggta tcctgaaatg
     2581 ttgtcaaagg aatgttgtca tctgtctttg agcacagtgt gtgaaagtga tttcaaagta
     2641 ctggtctgcc tgttgggcaa actacactcc ttgtctgttg tcttatgttt gctccagacc
     2701 tggcttcctc ttgcctcttc cactccttgt agccttcacc ttccacatgt cagccataca
     2761 tcccccacct gtgtgccttc tttcctctat gatgtctcag atgtccttga aaagcttccc
     2821 taaacacttt gacctggcct tattttgcct gacacactct tgcttctggg gtaccccatt
     2881 attaactatc ttaaacctct ttaccatgtc attgtgctta cacttcttaa acaatgcata
     2941 ggccaatgct cccaaagtat cttatgctgt ggacacagtg cacagctaac ccttcccaat
     3001 atctctaggg tgagtgtgac caatacctcc cttaggtagt cactgtcctc caccccacgt
     3061 ttccttcata gagacattta tggaagagcc cctgtgccca tgtaagtcca gcttcagtgg
     3121 tcaaaacaaa acattgctat actgagcctt ccttgcctca gggcctgtag ccctgggtac
     3181 cacggattta gaggatgcca gcactctgcc agtcctaaac tcaacctgtt aactttgctt
     3241 tcctttccct cagaaagaca atcccctggc tcctgggcct cctgacttca caaggttttc
     3301 ttttcagtca tgaatatacg tgagctacta tatttacatc cattagctta atacattttg
     3361 ttttcctgag ccttccatgt ctcctcttgt ggcttcacct cattgactac acaaacagac
     3421 cccactccca cccccaggat aactgcagat tggaatattt caataaaaag taataaaatc
     3481 ctaccacatg ggcagggact gcatacc
//
