LOCUS       NM_177758               5446 bp    mRNA    linear   ROD 02-JUN-2024
DEFINITION  Mus musculus zinc finger and SCAN domains 20 (Zscan20), mRNA.
ACCESSION   NM_177758
VERSION     NM_177758.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 5446)
  AUTHORS   Guo,G., Huss,M., Tong,G.Q., Wang,C., Li Sun,L., Clarke,N.D. and
            Robson,P.
  TITLE     Resolution of cell fate decisions revealed by single-cell gene
            expression analysis from zygote to blastocyst
  JOURNAL   Dev Cell 18 (4), 675-685 (2010)
   PUBMED   20412781
REFERENCE   2  (bases 1 to 5446)
  AUTHORS   Yokoyama,S., Ito,Y., Ueno-Kudoh,H., Shimizu,H., Uchibe,K.,
            Albini,S., Mitsuoka,K., Miyaki,S., Kiso,M., Nagai,A., Hikata,T.,
            Osada,T., Fukuda,N., Yamashita,S., Harada,D., Mezzano,V., Kasai,M.,
            Puri,P.L., Hayashizaki,Y., Okado,H., Hashimoto,M. and Asahara,H.
  TITLE     A systems approach reveals that the myogenesis genome network is
            regulated by the transcriptional repressor RP58
  JOURNAL   Dev Cell 17 (6), 836-848 (2009)
   PUBMED   20059953
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK144249.1, BC076602.1 and BC065079.1.
            
            [WARNING] On Jul 9, 2024 this sequence was replaced by NM_177758.5.
            
            On Mar 1, 2008 this sequence version replaced NM_177758.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK144249.1, AK153688.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849374,
                                           SAMN00849375 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-84                AK144249.1         2-85
            85-3536             BC076602.1         1-3452
            3537-4942           AK144249.1         3538-4943
            4943-5446           BC065079.1         3533-4036
FEATURES             Location/Qualifiers
     source          1..5446
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="4"
                     /map="4 62.04 cM"
     gene            1..5446
                     /gene="Zscan20"
                     /gene_synonym="C130001F22; Zfp31; Zkscan20"
                     /note="zinc finger and SCAN domains 20"
                     /db_xref="GeneID:269585"
                     /db_xref="MGI:MGI:2679268"
     exon            1..105
                     /gene="Zscan20"
                     /gene_synonym="C130001F22; Zfp31; Zkscan20"
                     /inference="alignment:Splign:2.1.0"
     exon            106..613
                     /gene="Zscan20"
                     /gene_synonym="C130001F22; Zfp31; Zkscan20"
                     /inference="alignment:Splign:2.1.0"
     CDS             215..3307
                     /gene="Zscan20"
                     /gene_synonym="C130001F22; Zfp31; Zkscan20"
                     /note="zinc finger protein 31; zinc finger with KRAB and
                     SCAN domains 20"
                     /codon_start=1
                     /product="zinc finger and SCAN domain-containing protein
                     20"
                     /protein_id="NP_808426.2"
                     /db_xref="CCDS:CCDS18672.2"
                     /db_xref="GeneID:269585"
                     /db_xref="MGI:MGI:2679268"
                     /translation="MMAVASPPPEPEDLLIVKLEEDSWGSDSRPEKESHSPVPGPEVS
                     RRCFRQFRYRDAAGPHEAFSQLWALCCRWLRPELRLKEQILELLVLEQFLSILPREVQ
                     TWVQARHPESGEEAVALVEDWHREAWAAGQQGLELCSEDSRSFEAVQEFQRFQLQPVT
                     HGSEGQPRKQWVENARPDLSKMPPESLKESAVLTPQAPTVPKMASIGDWEVAGKSQET
                     PSPSRQAKKEPCQDPAGGDRGDSACLGVPASKPSATSQQEQGPEIWGLSLINSGNGSA
                     ADDSLDSAQDKPVQAVAQADSRAWGEPCQWGAEDMKVSGVHWGYEETKTFLAILSESP
                     FSEKLQTCHQNRQVYRAIAERLRARGFLRTLEQCRYRVKNLLRNYRKAKNSHPPGTCP
                     FYEELEALVRARTAIRRTSGGPGEAVALPRLGDSDTEMDDQDEGSWEPEETVEDCSGS
                     GLAAEESLQGPRIAGGPALLQSRIAGVHWGFEETKVFLAILSESPFAEKLRTCHQNSQ
                     IYRAIAERLRALGFLRTLEQCRYRFKNLLRSYRKAKSSCPPGTCPFYEEMDSLMRART
                     VIRAVEMVGEATGLPGSGQSSTEADDQEAWGEMEDEDAVRLLTPDSQPADAGFELKRE
                     EEDQISEQDVLGDLPGALSRYTTKAVCQPCDWGEDHVNGNEGEWRNTWEECSSEEDLE
                     KLIDHQGLYLTEKPYGCDTRAKSFSRKVHFFAPQRTHSSEKPYKCLGSGKSFSDRANL
                     STHQRIHIGEKPYRCLECGKSFNDPSNLITHQRTHTGEKPYKCGLCWKSFNQSSNLLK
                     HQRVHLGGPPNQRDEPGENFGQSLSYSAHWRRNSTQEGPKEPQNISMGADSPGACHPN
                     SGEKLYSCPECGRCFSKSSALTSHQRIHSGEKPYECAVCGKSFSKSSSLANHRRTHTG
                     EKPHKCADCGKCFSERSKLITHQRVHTGEKPYECPECGKFFRDRSNLITHQRIHTGEK
                     PYKCRECGKCFNQSSSLIIHQRIHTGEKPYKCTECGKDFNNSSHFSAHRRTHAGGKAL
                     "
     exon            614..785
                     /gene="Zscan20"
                     /gene_synonym="C130001F22; Zfp31; Zkscan20"
                     /inference="alignment:Splign:2.1.0"
     exon            786..862
                     /gene="Zscan20"
                     /gene_synonym="C130001F22; Zfp31; Zkscan20"
                     /inference="alignment:Splign:2.1.0"
     exon            863..947
                     /gene="Zscan20"
                     /gene_synonym="C130001F22; Zfp31; Zkscan20"
                     /inference="alignment:Splign:2.1.0"
     exon            948..1637
                     /gene="Zscan20"
                     /gene_synonym="C130001F22; Zfp31; Zkscan20"
                     /inference="alignment:Splign:2.1.0"
     exon            1638..2066
                     /gene="Zscan20"
                     /gene_synonym="C130001F22; Zfp31; Zkscan20"
                     /inference="alignment:Splign:2.1.0"
     exon            2067..5372
                     /gene="Zscan20"
                     /gene_synonym="C130001F22; Zfp31; Zkscan20"
                     /inference="alignment:Splign:2.1.0"
     regulatory      3516..3521
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Zscan20"
                     /gene_synonym="C130001F22; Zfp31; Zkscan20"
                     /note="hexamer: AATACA"
     polyA_site      3536
                     /gene="Zscan20"
                     /gene_synonym="C130001F22; Zfp31; Zkscan20"
                     /note="major polyA site"
     regulatory      5335..5340
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Zscan20"
                     /gene_synonym="C130001F22; Zfp31; Zkscan20"
                     /note="hexamer: ATTAAA"
     polyA_site      5367
                     /gene="Zscan20"
                     /gene_synonym="C130001F22; Zfp31; Zkscan20"
                     /note="major polyA site"
ORIGIN      
        1 agagatcggg ttccagggct ggcggcgctg ggactatgcg tcccagcatc ccctgcaaga
       61 gcccgggagc acttccggcc tgttgagaag tgggtgtctc tgtggtcttg gggagctgtc
      121 cccgccaacc cccaggagcc ccttgaagga cacattgtca atgcaggaag cagccagatg
      181 agacagctcc gctgaagtga agcacccggg ccagatgatg gctgtggcct cacctccgcc
      241 agagccggaa gacctcctga ttgtgaagct ggaggaggac tcgtggggat cagactccag
      301 acccgagaag gagagccaca gccccgtccc tggccccgag gtttcccgcc ggtgtttcag
      361 gcagttccga taccgggatg cagctggacc ccatgaggcc ttcagccagc tctgggcgct
      421 ctgctgtcgt tggctgagac ctgagcttcg cctcaaagaa cagatcctgg aactgttggt
      481 gctggagcag ttcctgtcca tcttacccag ggaggtgcag acctgggtgc aggcacgaca
      541 ccccgagagc ggagaggagg cggtggccct ggtggaggat tggcaccgag aggcctgggc
      601 tgccggacag cagggactgg agctatgctc tgaagactcc aggtccttcg aagcagttca
      661 ggagttccag aggttccagc tgcagccagt gacccacggc tctgagggcc agccccgaaa
      721 acagtgggtg gagaatgcac gtcccgacct ttccaagatg ccacctgagt ccttgaaaga
      781 gagtgctgtc ctcacacccc aagccccaac tgttccaaag atggcgagca ttggagattg
      841 ggaggtggca ggcaagtccc aggaaacccc gagccccagt agacaagcca agaaggagcc
      901 ctgccaggac cccgcaggag gtgatcgtgg ggacagtgcg tgcctgggag ttccagcttc
      961 aaagccaagt gccacctccc agcaagagca aggaccggag atttggggtc tgagccttat
     1021 aaattctggg aatgggagtg ctgcagacga tagcctggac agtgcgcaag acaagccagt
     1081 gcaggcagtg gcccaggcag actcaagggc ctggggagag ccgtgccaat ggggtgcgga
     1141 ggacatgaag gtgtcaggtg ttcactgggg ctatgaggaa accaagactt tcctggccat
     1201 cttaagtgag tctcctttct ctgaaaagct ccagacctgt caccagaacc gccaggtata
     1261 ccgggctatc gcagagcgac tgagggcacg gggcttcttg cggactctgg agcagtgtcg
     1321 ctacagggtc aaaaaccttc tccggaacta ccggaaagcc aagaacagcc atccgccagg
     1381 gacctgcccc ttctatgagg agctggaggc ccttgtgagg gctcggacag ccatcagaag
     1441 aacctcaggt gggccaggag aggcagtggc actccccagg ctgggtgaca gcgacactga
     1501 gatggatgac caagacgaag ggagctggga gcccgaggag accgtggaag actgcagtgg
     1561 ttctggcctg gccgccgagg agtctcttca ggggcccagg attgcagggg gcccagctct
     1621 gctccagagc cgtattgcag gcgtgcactg gggcttcgaa gagaccaagg tctttctggc
     1681 aattctcagt gagtccccct tcgccgaaaa gcttcgcacc tgtcaccaaa acagccagat
     1741 ataccgggcc atcgctgaac ggctgcgtgc gctgggtttc ctgcggacgc tggaacaatg
     1801 ccgctaccga ttcaagaacc ttcttcgaag ctacaggaaa gccaagagca gctgtccacc
     1861 aggaacctgc ccgttctatg aggagatgga ctcactgatg agggctcgga ctgtgatcag
     1921 agccgtggag atggtaggag aagccacagg cctccctgga tctgggcaga gcagtactga
     1981 ggctgatgac caagaggcct ggggtgagat ggaagatgag gacgccgtta gacttctgac
     2041 tccagactcc cagcctgcag atgcaggatt tgagttgaag cgtgaggaag aagaccagat
     2101 ttcagagcag gatgttttgg gggatttgcc tggcgcctta tcaagatata ccaccaaagc
     2161 cgtttgccag ccttgtgact ggggggagga ccatgtgaac ggaaatgaag gggagtggag
     2221 gaacacatgg gaagagtgct cctctgagga ggacttagaa aaactcattg accaccaagg
     2281 cctgtacctc acagagaaac cctacggatg tgacacacgt gccaaaagct tcagtcggaa
     2341 agtgcatttc tttgccccgc agcggaccca ttcaagtgag aaaccctaca agtgtcttgg
     2401 ctctgggaag agttttagtg accgtgccaa cctcagtacc caccagagaa tccatattgg
     2461 agagaagccg tacagatgcc tggagtgtgg gaagagcttc aatgacccct ctaacctcat
     2521 cacccaccag agaacccaca caggggaaaa gccctataaa tgtgggctgt gttggaaaag
     2581 ctttaaccag agctcaaacc tgctgaaaca tcagcgggtc cacttgggag gacctcccaa
     2641 ccagcgggat gagcccgggg agaactttgg ccaaagtcta tcatacagtg ctcactggag
     2701 acgaaattct acacaggagg gacctaaaga acctcagaat atcagcatgg gtgccgactc
     2761 tcctggagcc tgtcacccca actccgggga gaagctgtac tcgtgccctg agtgtggaag
     2821 gtgcttctct aagagctctg ccctcacgag tcaccaaagg atccacagtg gcgagaagcc
     2881 gtatgagtgt gccgtgtgcg ggaagagttt cagcaagagc tccagcctgg ctaaccaccg
     2941 acggactcac accggcgaga agccgcacaa gtgtgcggac tgcgggaagt gcttcagcga
     3001 gcgttccaag ctcatcaccc accagagggt ccacacggga gagaagccct acgaatgccc
     3061 cgagtgtggc aagttcttcc gagaccgctc caacctcatc acccaccaga ggattcacac
     3121 gggagagaag ccgtacaagt gcagagagtg cgggaagtgc ttcaaccaga gctccagcct
     3181 catcattcac cagcggattc acacgggcga gaaaccctac aagtgcacag aatgcggcaa
     3241 agacttcaac aacagctccc acttcagcgc ccaccgcaga acccacgcgg gagggaaagc
     3301 gttgtaggca acacctcctc ctcctcctga cagaagcaat aatgtgtatc tatgcctctc
     3361 aagttcctaa aacactctag aaagaaacct tccgatgttt aagcttgctg taaatctaga
     3421 ggtgccatct ttgtaaaatc cgggtaattt ggaagtgaat ttcagtgact aaggtttgaa
     3481 ggtacttcca agtgtaattt ggtttgcaca cgcccaatac acacatagaa tccttacgat
     3541 gtctttacaa atgctgtcac ttgagaactt agtctgaggc agatgggtga tattggggtt
     3601 agagttgaat ccgtggccca gcatactgat tcctgtttct ttctgtgcct tcgctaccct
     3661 tcccacggaa accagttctt gttcttcttg gtagtttgca gttggagcaa atcctcacag
     3721 ggaaaacctt gaaaactcac agtgagagga ggtgtagact gggaactagt gcctggggta
     3781 ccccatcttg aggtcagcag caagtggggc cacagcgaga tcattgcaga atcattacta
     3841 atagaaatag ctgttcattg aacatttgct ctttggcagc ctgtgtgcca agcgccttat
     3901 gtaacatctc atttaatcct caaagtagtc ccagcgtaga aaatggagga ggcacaattc
     3961 atcaagactt gtgtgtcccc agagcctgag gggctgggtg ctctcctgag tcctcttaca
     4021 tgagggcatt aatgaactct ctgtctttta caagtacaga agttgagagt tcctgcaggt
     4081 gagaggattt gggacgttca gaagtggtga ggtgctctgt gtgaggctga gttgttacca
     4141 gagcaatggg tctgagtcac catctttata gagtcatacg ggtgagagag gtaggtagat
     4201 ggagacagtg tgacttgcag cgagatcgtg ctttggctaa gaagtgggtt gaagagtcct
     4261 ttctcaggtc agtcctgctt ctctgtacct gtggctgggc acaggtgacc atgtcttccc
     4321 aaactcaact tccctgtgct cagtctcgcc tgccttttgg tctctctggc tcagtttctt
     4381 catttccaat cccgatgcct gaggtagaag gagctgaaac attgtccttt actgagaggg
     4441 cttgaaaagg gttccatgtt ctaggttcat gacacccttt tagcttgagt cctcttgtcc
     4501 taagctgccc tatatggtct cttagaccag ccactcccac aacaggctac ggcagggagg
     4561 cccatacaca gtgcttttct tgtttgtagc actttggcct ccatagtttt tcttagggtt
     4621 taaaaacatt gaataaggac tttgactttc atagattttt aaaggaaggt gactttctta
     4681 cgtctatgtg tgaccttaga gtgccacttg tatcccagtt acttcagggc tctggaagta
     4741 ttgatcagag aatagctgtg aagaactttg aagactggaa cgttctattt gtatgtgaga
     4801 aagtaggtgg aagctcttga ttgctgtccc ctctaaagga ggtcactccc tagccttctt
     4861 ctaggaaccg gaagcccctt cccaggaacg agtccactgg aggctacttt ctgtcaactc
     4921 tcttcagctt acctttcctg gctcatctta tctctgagga tcaggggtca tggggtgagc
     4981 cctggttaaa gatcagcaaa tgtcagttat tgcagtaaga agatacgtag gataccctgg
     5041 gtctgaaagg aagggtcctg agggagagaa gaacattcta gagaaagtta ccaaggtatg
     5101 aaagacctgg gttctaggtg aaggtagagg cccaggtttg tatcctgggg taagggactg
     5161 ggatggtggg agggtggcat ctgggattgc acaggtgctg ggacaaggtc attctgggtg
     5221 cagcaatgcc ttcagctctt tcttttcaga agttggaagc tcagctgggt gggcccttaa
     5281 tggtgctaat ctctatcgat tccagcctca cattcagcac atgccttagt tgtaattaaa
     5341 ttgcctagtg ctttttttct ctccaaactg aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
     5401 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaa
//
