LOCUS       NM_001382511            2261 bp    mRNA    linear   ROD 28-AUG-2024
DEFINITION  Mus musculus zinc finger and SCAN domain containing 2 (Zscan2),
            transcript variant 2, mRNA.
ACCESSION   NM_001382511 XM_006540805
VERSION     NM_001382511.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2261)
  AUTHORS   Sanchez Carretero,L., Cardenosa Perez,A.C., Peces-Barba,G. and
            Perez-Rial,S.
  TITLE     Differential lung gene expression identified Zscan2 and Bag6 as
            novel tissue repair players in an experimental COPD model
  JOURNAL   PLoS One 19 (8), e0309166 (2024)
   PUBMED   39172905
  REMARK    GeneRIF: Differential lung gene expression identified Zscan2 and
            Bag6 as novel tissue repair players in an experimental COPD model.
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2261)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   3  (bases 1 to 2261)
  AUTHORS   Lord,T., Law,N.C., Oatley,M.J., Miao,D., Du,G. and Oatley,J.M.
  TITLE     A novel high throughput screen to identify candidate molecular
            networks that regulate spermatogenic stem cell functionsdagger
  JOURNAL   Biol Reprod 106 (6), 1175-1190 (2022)
   PUBMED   35244684
REFERENCE   4  (bases 1 to 2261)
  AUTHORS   Ingham,N.J., Pearson,S.A., Vancollie,V.E., Rook,V., Lewis,M.A.,
            Chen,J., Buniello,A., Martelletti,E., Preite,L., Lam,C.C.,
            Weiss,F.D., Powis,Z., Suwannarat,P., Lelliott,C.J., Dawson,S.J.,
            White,J.K. and Steel,K.P.
  TITLE     Mouse screen reveals multiple new genes underlying mouse and human
            hearing loss
  JOURNAL   PLoS Biol 17 (4), e3000194 (2019)
   PUBMED   30973865
  REMARK    Publication Status: Online-Only
REFERENCE   5  (bases 1 to 2261)
  AUTHORS   Wiese,C.B., Ireland,S., Fleming,N.L., Yu,J., Valerius,M.T.,
            Georgas,K., Chiu,H.S., Brennan,J., Armstrong,J., Little,M.H.,
            McMahon,A.P. and Southard-Smith,E.M.
  TITLE     A genome-wide screen to identify transcription factors expressed in
            pelvic Ganglia of the lower urinary tract
  JOURNAL   Front Neurosci 6, 130 (2012)
   PUBMED   22988430
  REMARK    Publication Status: Online-Only
REFERENCE   6  (bases 1 to 2261)
  AUTHORS   Yokoyama,S., Ito,Y., Ueno-Kudoh,H., Shimizu,H., Uchibe,K.,
            Albini,S., Mitsuoka,K., Miyaki,S., Kiso,M., Nagai,A., Hikata,T.,
            Osada,T., Fukuda,N., Yamashita,S., Harada,D., Mezzano,V., Kasai,M.,
            Puri,P.L., Hayashizaki,Y., Okado,H., Hashimoto,M. and Asahara,H.
  TITLE     A systems approach reveals that the myogenesis genome network is
            regulated by the transcriptional repressor RP58
  JOURNAL   Dev Cell 17 (6), 836-848 (2009)
   PUBMED   20059953
REFERENCE   7  (bases 1 to 2261)
  AUTHORS   Kenney-Hunt,J.P., Vaughn,T.T., Pletscher,L.S., Peripato,A.,
            Routman,E., Cothran,K., Durand,D., Norgard,E., Perel,C. and
            Cheverud,J.M.
  TITLE     Quantitative trait loci for body size components in mice
  JOURNAL   Mamm Genome 17 (6), 526-537 (2006)
   PUBMED   16783635
REFERENCE   8  (bases 1 to 2261)
  AUTHORS   Denny,P. and Ashworth,A.
  TITLE     Mapping of two zinc finger protein genes to mouse chromosomes 4 and
            7
  JOURNAL   Mamm Genome 6 (9), 683 (1995)
   PUBMED   8535085
REFERENCE   9  (bases 1 to 2261)
  AUTHORS   Denny,P. and Ashworth,A.
  TITLE     A zinc finger protein-encoding gene expressed in the post-meiotic
            phase of spermatogenesis
  JOURNAL   Gene 106 (2), 221-227 (1991)
   PUBMED   1937051
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC109257.8.
            
            On May 13, 2020 this sequence version replaced XM_006540805.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR7652917.487036.1,
                                           ERR2680379.152555.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-147               AC109257.8         139224-139370
            148-654             AC109257.8         141458-141964
            655-2261            AC109257.8         153229-154835
FEATURES             Location/Qualifiers
     source          1..2261
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="7"
                     /map="7 45.71 cM"
     gene            1..2261
                     /gene="Zscan2"
                     /gene_synonym="Zfp-29; Zfp29"
                     /note="zinc finger and SCAN domain containing 2"
                     /db_xref="GeneID:22691"
                     /db_xref="MGI:MGI:99176"
     exon            1..147
                     /gene="Zscan2"
                     /gene_synonym="Zfp-29; Zfp29"
                     /inference="alignment:Splign:2.1.0"
     exon            148..654
                     /gene="Zscan2"
                     /gene_synonym="Zfp-29; Zfp29"
                     /inference="alignment:Splign:2.1.0"
     CDS             252..2096
                     /gene="Zscan2"
                     /gene_synonym="Zfp-29; Zfp29"
                     /note="isoform 1 is encoded by transcript variant 2; zinc
                     finger and SCAN domain-containing protein 2; zinc finger
                     protein 29"
                     /codon_start=1
                     /product="zinc finger and SCAN domain-containing protein 2
                     isoform 1"
                     /protein_id="NP_001369440.1"
                     /db_xref="GeneID:22691"
                     /db_xref="MGI:MGI:99176"
                     /translation="MAAEVPAVSTPLSPLVQVPQEEDEQAEVTTMILEDDAWVQEAVL
                     QEDGPESEPFPQSAGKGSPQEEDAAEGPQGALVRFRELCRRWLRPEVHTKEQMLTVLP
                     REIQAWLQEHRPESSEEAVALVEDLTQTFRHSDFEIQSENGENSNEDMFEGVESHGMF
                     LNISGGEGGQQSDGDSDFERDCGSGGAQGHAPGEDPRVVPSEGREVGQLIGLQGTYLG
                     EKPYECPQCGKTFSRKSHLITHERTHTGEKYYKCDECGKSFSDGSNFSRHQTTHTGEK
                     PYKCRDCGKSFSRSANLITHQRIHTGEKPFQCAECGKSFSRSPNLIAHQRTHTGEKPY
                     SCPECGKSFGNRSSLNTHQGIHTGEKPYACKECGESFSYNSNLIRHQRIHTGEKPYKC
                     TECGQKFSQSSALITHRRTHTGEKPYQCGECGKNFSRSSNLATHRRTHLVEKPYKCGL
                     CGKSFSQSSSLIAHQGTHTGEKPYECLTCGESFSWSSNLIKHQRTHTGEKPYRCGDCG
                     KGFSQRSQLVVHQRTHTGEKPYKCLMCGKSFSRGSILVMHQRAHLGDKPYRCPECGKG
                     FSWNSVLIIHQRIHTGEKPYRCPECGKGFSNSSNFITHQRTHLKEKLY"
     exon            655..2261
                     /gene="Zscan2"
                     /gene_synonym="Zfp-29; Zfp29"
                     /inference="alignment:Splign:2.1.0"
     polyA_site      2233
                     /gene="Zscan2"
                     /gene_synonym="Zfp-29; Zfp29"
                     /note="major polyA site"
     polyA_site      2261
                     /gene="Zscan2"
                     /gene_synonym="Zfp-29; Zfp29"
ORIGIN      
        1 gtccattgtt ctctgtgccc cttgggcttg agctgaggtg aatccagagg ggccgggccg
       61 ggccgggcca gaccgtgggg tgcttttgcg ctcagagaga tagcgggaac aggacctggt
      121 ccctggagag gcgagcggga gaggcagcag tgtttcttgt tgagattgga ggaaagacgg
      181 ccttctcaga gagcctgact ggagacaggt gttaggcttg aagccttcgt gaccatccag
      241 gaagttggac aatggcagcc gaagtgccag cagtgagcac tcccctcagc cctttggttc
      301 aggtacctca agaagaagat gaacaggcag aggtcaccac tatgatcctg gaggatgacg
      361 cgtgggtgca ggaagcagtg ctgcaggagg atggccctga gtctgagccc tttccccaga
      421 gtgctggaaa aggcagcccc caggaggagg acgcagccga gggaccccag ggtgctcttg
      481 tccgatttcg ggagctctgt cggcgctggc tgaggccaga ggtgcacact aaggagcaga
      541 tgctaactgt gctgccaaga gaaattcagg cctggctgca agaacatcgg cctgagagca
      601 gtgaggaggc agtggccctg gtggaagacc tgacccagac ttttcggcac agtgattttg
      661 agatacagag cgagaatggg gagaactcaa atgaagacat gtttgagggt gtggagtcac
      721 atgggatgtt cttgaacatc tctggagggg aaggtggtca gcagtctgat ggggacagtg
      781 actttgagag agactgtggc tctggaggcg cccagggaca tgccccgggt gaggacccca
      841 gggtcgtgcc atcggaagga agggaagttg gccagctaat aggccttcag ggcacctacc
      901 tgggtgagaa gccgtatgaa tgtccccagt gtgggaaaac ttttagccgg aaatcccacc
      961 ttatcaccca tgagcggacc cacacaggag aaaaatacta caaatgtgat gaatgtggga
     1021 agagctttag tgacggctcg aactttagta gacaccaaac gactcacact ggagagaagc
     1081 cctacaaatg cagggactgc gggaagagct ttagccggag tgcgaacctt atcacgcacc
     1141 agaggatcca caccggcgag aagcctttcc agtgtgccga gtgtggcaag agtttcagca
     1201 ggagccccaa cctcatcgcc catcagcgca cgcacacagg ggaaaagccg tactcgtgcc
     1261 ccgagtgtgg caagagcttt ggcaaccggt ccagccttaa tactcaccag ggcattcaca
     1321 ccggagaaaa accctacgcg tgcaaggaat gcggcgaaag cttcagttac aactccaacc
     1381 tgatccgaca ccagagaatc cacacgggag agaaaccata caaatgcacc gagtgcggcc
     1441 agaagttcag ccagagctcc gcgctcatta cgcaccggag aacgcacacc ggggagaagc
     1501 cctatcagtg cggcgagtgc ggcaagaact tcagccgcag ctccaacctg gccactcacc
     1561 ggcgcaccca cctggtggag aagccgtaca agtgcgggct gtgcggcaag agcttcagcc
     1621 agagctccag cctgatcgcg caccagggca cgcacaccgg cgagaagccc tacgagtgcc
     1681 tcacgtgcgg cgagagcttc agctggagct ccaacctcat caagcaccag cggacgcaca
     1741 ccggcgagaa gccctacaga tgcggcgact gtgggaaggg cttcagccag cgctcgcagc
     1801 tcgtggtgca ccagcggacg cacaccggcg agaagcccta caagtgcctc atgtgtggca
     1861 agagcttcag ccggggctcc attctggtga tgcaccagcg agcgcacttg ggagacaagc
     1921 cttacaggtg cccggagtgc gggaagggct tcagctggaa ctccgttctc atcatccacc
     1981 agcgcatcca cacgggagag aagccctaca gatgcccgga gtgcggcaaa ggcttcagca
     2041 acagctccaa cttcatcaca caccagagga cgcacctgaa agagaagctt tactgaagtg
     2101 gcagaaaaga gaaggaagtg ctgagctgac tctgcaggga gaactcccac agtgtccctc
     2161 cccacaaccc tccccccaca acccccctcc cccccgcccg tgttgtccct ttaaaagaac
     2221 cacttttcct aaatactctt tgtgagtttt tgccagagcc a
//
