LOCUS       NM_001017955            3727 bp    mRNA    linear   ROD 06-AUG-2023
DEFINITION  Mus musculus zinc finger and SCAN domain containing 18 (Zscan18),
            transcript variant 1, mRNA.
ACCESSION   NM_001017955 XM_006539793 XM_133185 XM_891386 XM_899575 XM_909864
            XM_921471
VERSION     NM_001017955.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3727)
  AUTHORS   Gaudet P, Livstone MS, Lewis SE and Thomas PD.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC161211.21.
            
            On or before May 13, 2020 this sequence version replaced
            XM_006539793.3, NM_001017955.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR7345562.4665085.1,
                                           SRR10662773.2586936.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164139 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-101               AC161211.21        159122-159222       c
            102-1647            AC161211.21        152663-154208       c
            1648-1797           AC161211.21        151991-152140       c
            1798-1904           AC161211.21        150559-150665       c
            1905-1983           AC161211.21        150214-150292       c
            1984-2073           AC161211.21        149354-149443       c
            2074-3727           AC161211.21        146642-148295       c
FEATURES             Location/Qualifiers
     source          1..3727
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="7"
                     /map="7 7.63 cM"
     gene            1..3727
                     /gene="Zscan18"
                     /gene_synonym="EG232875"
                     /note="zinc finger and SCAN domain containing 18"
                     /db_xref="GeneID:232875"
                     /db_xref="MGI:MGI:3643810"
     exon            1..101
                     /gene="Zscan18"
                     /gene_synonym="EG232875"
                     /inference="alignment:Splign:2.1.0"
     exon            102..1647
                     /gene="Zscan18"
                     /gene_synonym="EG232875"
                     /inference="alignment:Splign:2.1.0"
     CDS             189..2618
                     /gene="Zscan18"
                     /gene_synonym="EG232875"
                     /note="isoform 1 is encoded by transcript variant 1"
                     /codon_start=1
                     /product="zinc finger and SCAN domain-containing protein
                     18 isoform 1"
                     /protein_id="NP_001017955.2"
                     /db_xref="CCDS:CCDS52021.1"
                     /db_xref="GeneID:232875"
                     /db_xref="MGI:MGI:3643810"
                     /translation="MLPLERVLASPRSSPPQPEPSTLRSKDTVQQEEPGQQEEPIQQE
                     GLIKQQEPSQQEECRRQDELIRKEEPIQLLETSQREELSEQQEPSQQDEPSQEEESVQ
                     LQEPSQWGEPGQKDVPMQQEEPMQQDEPSQWEEPMQQDEPMQQEELMQQTEPIEQDKP
                     IQQEELTQQEEPIQQDASIQRELIHQVRPIQKELILREEFIQQDKCTQKEEFIQQEKP
                     IQQVRFSEQEEPSQQEESSQQEESSQQEELSQQKESSQKAQPYQQEEPSQQQEPSQKD
                     QPSQQEEPSQQQEPSQKDQPSQQEELSQQEEPSQKDQCNQQEEPSQQQEPSQKDQPNQ
                     QAELSQQEEPSQKDQCNQQEEPSQKDQCKQQEEPSQKDQPNQQEEPSQLKETETITER
                     SAADLEFSRLRFREFVYQEAAGPHQTLARLHELCRQWLRPEACSKEQILELLVLEQFL
                     GILPDRVRPWVVAQYPENCKKAASLVEGISDILEEPGMMLCSPGGSSSSFSEGDYERC
                     PEPLLLPCGLLSPNRNLRPRDILVRRDTSPLLPAWPTLESVHLDQERTEGEKSKEANA
                     ATAELKGPLQSEWDHLDPTEDNLTSYSKLLLWGCQFSQAGPTSMLETEEPCAVENLPG
                     GSLPDSTRQQESKGNVCEEVSLGETLMESLSGDVPVSASIDTALEEEQQPQKALDAEG
                     EDSSPASPQRQSVIQQSAQDKDRPHQGTGTKRPHPDDEDEMAPECLSSTSSYQLPFDA
                     GKVLHVDGHDSGQDSGTSAGGCSSADKSDASQGKPYTCSECGEAFAWISNLMEHHKSH
                     GSETCYVSQGC"
     exon            1648..1797
                     /gene="Zscan18"
                     /gene_synonym="EG232875"
                     /inference="alignment:Splign:2.1.0"
     exon            1798..1904
                     /gene="Zscan18"
                     /gene_synonym="EG232875"
                     /inference="alignment:Splign:2.1.0"
     exon            1905..1983
                     /gene="Zscan18"
                     /gene_synonym="EG232875"
                     /inference="alignment:Splign:2.1.0"
     exon            1984..2073
                     /gene="Zscan18"
                     /gene_synonym="EG232875"
                     /inference="alignment:Splign:2.1.0"
     exon            2074..3727
                     /gene="Zscan18"
                     /gene_synonym="EG232875"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agtttacggc gctgcaggcc gcgcacgcgt attgcagcgg gccgccatcg gcgctcggtg
       61 ttcgagactg cgcaagtgag aggggcatcg ctgcgcagca ggtactgctg acctttcctg
      121 gttaccctgt tatctttgct gtctttgctg agttcttggc agttatattt ctgtggcagc
      181 ctgtgaagat gctgcctttg gagagggtgt tagcctctcc tagaagctct ccaccccaac
      241 cagaaccatc tactctgcgg tcaaaagata cagtacagca ggaagaacct ggccagcagg
      301 aggaacccat ccagcaggaa ggactcatta agcaacaaga acctagccag caggaggaat
      361 gcaggaggca ggatgaactc atccggaaag aagaacccat ccagctgctg gaaactagtc
      421 agagggaaga actcagtgag cagcaagaac ctagtcaaca ggatgagccc agtcaagagg
      481 aagagtctgt ccaactgcaa gaacccagcc agtggggaga acctggccaa aaggatgtac
      541 ccatgcagca ggaagaacct atgcagcagg atgagcccag ccagtgggaa gaacccatgc
      601 agcaagatga acccatgcag caggaagaac tcatgcagca gacagagccc attgaacagg
      661 ataagcccat ccaacaggaa gaactcaccc agcaggagga gcccattcag caggatgctt
      721 ccatccaacg tgaactcatt catcaggtga ggcccatcca gaaggaattg attctgcggg
      781 aggagttcat tcagcaggat aagtgcaccc aaaaagaaga atttattcag caagagaagc
      841 caattcagca ggtaaggttc agtgaacagg aggaacccag ccagcaggag gaatccagcc
      901 agcaggagga atccagccag caggaggagc tcagtcaaca gaaggagtct agccagaagg
      961 ctcaaccata ccaacaggag gaacccagcc aacagcaaga gcctagccag aaggatcaac
     1021 ccagccagca ggaggaaccc agccaacagc aagagcctag tcagaaagat caacccagcc
     1081 agcaggagga gctcagccaa caggaagagc ctagccagaa ggatcaatgc aaccaacagg
     1141 aggaacccag ccaacaacaa gagcctagcc agaaggatca acccaaccaa caggcagaac
     1201 tcagccaaca ggaagagcct agccagaagg atcaatgcaa ccaacaggaa gagcctagcc
     1261 agaaggatca atgcaaacaa caggaagagc ctagccagaa ggatcaaccc aaccaacagg
     1321 aagagcctag ccagctgaag gaaacagaaa ccatcactga gagatctgct gctgacctcg
     1381 agttttcccg cctccgcttc cgggagtttg tctaccagga ggcagctggg cctcaccaga
     1441 ctttggccag gcttcatgag ctatgccgcc agtggctgag gcccgaggcc tgctccaaag
     1501 agcagatcct ggagctgctc gttctggagc agttcctggg catcttgcca gacagggtcc
     1561 gtccctgggt ggtagcccag tatcccgaga attgcaagaa agctgcctcc ctggtggagg
     1621 gtatctctga catcctggag gagccaggaa tgatgttgtg ttccccgggt gggtcatcat
     1681 cgtcattcag cgagggagac tatgagaggt gtcctgagcc cctgctgcta ccatgtgggt
     1741 tgctaagtcc taacagaaac ttaagaccta gggacatcct ggtacgccgt gatacttctc
     1801 cccttctacc agcttggcct actctggaat ctgtgcattt ggatcaagag cgtacagagg
     1861 gagaaaagag taaagaggcc aacgctgcca cagctgagct gaaggggcct ctacagtcgg
     1921 aatgggacca cctggatccc acagaggata acctgacgag ttacagcaag ctgctcctgt
     1981 gggggtgtca gttttcccag gctggtccaa cttccatgct ggagacagag gaaccttgtg
     2041 cggtggaaaa cctgccaggg ggcagcctcc cagacagcac caggcagcag gaaagcaaag
     2101 gaaatgtgtg tgaggaagtc tccctggggg agacactgat ggagagtctt tcaggggatg
     2161 ttcctgttag tgcttcaata gatactgccc tggaggagga acagcaacct cagaaggctc
     2221 tggatgccga gggtgaagat tcaagccctg ccagtcccca gaggcaatca gtcatccagc
     2281 agtcagccca ggacaaggat aggccacatc aaggcactgg gacaaagagg ccccatccag
     2341 atgacgagga tgaaatggcc cctgagtgtc tttccagcac cagcagctac cagctgccat
     2401 ttgatgcagg gaaagtgctt catgtggatg gtcatgattc tgggcaggac tcaggaactt
     2461 ctgctggggg atgctcttca gctgataagt ctgatgcatc tcaagggaag ccctacacat
     2521 gcagtgaatg tggggaggcc tttgcatgga tctccaacct tatggagcat cacaagagtc
     2581 atggcagtga gacatgctat gtgagccagg gctgctagga acccttccag ttctgcttgc
     2641 ttgtggtcaa gcaccacaag aatcacatac aaaaaaccaa aacaaagcca cactcagagc
     2701 ccttctctgc cagaagcaaa actcactggt gggagaattg gcagcttcta atgtgtgggt
     2761 ggttttcttt atacgacctg aggtataagg ctaagtagct ctgctatgac tgtcccatga
     2821 catgacagtt gtagcatgag tgaccctaag gctcatgtgt ggtagtggat tcttgaggta
     2881 tttctacagg catatctgtg attattttct ggatgctaat gtgctgaaaa gaactggaaa
     2941 ggggcagggc cctcatctta aaaacacact ttggtctgat gttatattct gtaaaccatc
     3001 agatgtgagg gaagactcca tttctgcagt attttaatac cacttatact ctggtcattt
     3061 gacattgcac aaagtgttga gttgccttaa atgtgatcta ttggcgcttt cttgagccct
     3121 ccttgcctca gttgcttccc tgtttgttca cacataattc ttgccatcta ttctggcctt
     3181 ttcataggta cgtgataaca ggtttacttc agaatcctta agagcaaaag ctgtttctta
     3241 gttcaagtca tgtcttcata tgtggagtgg cttgcaaaga tcacagaata tgccgacttc
     3301 agactgggtt tcagcccgtt agtgagttgt gaggtccagt cagtggatgg ccactgagat
     3361 tacagaacag cgaagtggaa taaaagtaga tcagaatgca tcctgtagta aaggcaaata
     3421 ctgttctgtg aaccttctca gcggagcgtc tgagagctgc taccacatca aatgtatttg
     3481 ttaaggggta caaacataca ggttgaagaa acgatccgag ctgagagaac caaatgtggc
     3541 ctacataggt gatcttgtgg ttttgctttg aacttcagat tacaacattg tttctattgc
     3601 ctgaacacaa atgtaattgc cctgcagata caaaaaggat gtctttttct gtcagtgtct
     3661 gagtaggcag tttgtgtaac ccccaaatca gaggcttacc ataataaagt atttatttct
     3721 tcattca
//
