LOCUS       NM_016684               4435 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus zinc finger and SCAN domain containing 12 (Zscan12),
            mRNA.
ACCESSION   NM_016684
VERSION     NM_016684.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 4435)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 4435)
  AUTHORS   Guo,G., Huss,M., Tong,G.Q., Wang,C., Li Sun,L., Clarke,N.D. and
            Robson,P.
  TITLE     Resolution of cell fate decisions revealed by single-cell gene
            expression analysis from zygote to blastocyst
  JOURNAL   Dev Cell 18 (4), 675-685 (2010)
   PUBMED   20412781
REFERENCE   3  (bases 1 to 4435)
  AUTHORS   Yokoyama,S., Ito,Y., Ueno-Kudoh,H., Shimizu,H., Uchibe,K.,
            Albini,S., Mitsuoka,K., Miyaki,S., Kiso,M., Nagai,A., Hikata,T.,
            Osada,T., Fukuda,N., Yamashita,S., Harada,D., Mezzano,V., Kasai,M.,
            Puri,P.L., Hayashizaki,Y., Okado,H., Hashimoto,M. and Asahara,H.
  TITLE     A systems approach reveals that the myogenesis genome network is
            regulated by the transcriptional repressor RP58
  JOURNAL   Dev Cell 17 (6), 836-848 (2009)
   PUBMED   20059953
REFERENCE   4  (bases 1 to 4435)
  AUTHORS   Nishimura,M., Yokoi,N., Miki,T., Horikawa,Y., Yoshioka,H.,
            Takeda,J., Ohara,O. and Seino,S.
  TITLE     Construction of a multi-functional cDNA library specific for mouse
            pancreatic islets and its application to microarray
  JOURNAL   DNA Res 11 (5), 315-323 (2004)
   PUBMED   15747579
REFERENCE   5  (bases 1 to 4435)
  AUTHORS   Okazaki,N., Kikuno,R., Ohara,R., Inamoto,S., Koseki,H., Hiraoka,S.,
            Saga,Y., Nagase,T., Ohara,O. and Koga,H.
  TITLE     Prediction of the coding sequences of mouse homologues of KIAA
            gene: III. the complete nucleotide sequences of 500 mouse
            KIAA-homologous cDNAs identified by screening of terminal sequences
            of cDNA clones randomly sampled from size-fractionated libraries
  JOURNAL   DNA Res 10 (4), 167-180 (2003)
   PUBMED   14621295
REFERENCE   6  (bases 1 to 4435)
  AUTHORS   Weissig,H., Narisawa,S., Sikstrom,C., Olsson,P.G., McCarrey,J.R.,
            Tsonis,P.A., Del Rio-Tsonis,K. and Millan,J.L.
  TITLE     Three novel spermatogenesis-specific zinc finger genes
  JOURNAL   FEBS Lett 547 (1-3), 61-68 (2003)
   PUBMED   12860387
  REMARK    GeneRIF: cloning and characterization of its expression during
            spermatogenesis
REFERENCE   7  (bases 1 to 4435)
  AUTHORS   Yokoyama,M., Nakamura,M., Okubo,K., Matsubara,K., Nishi,Y.,
            Matsumoto,T. and Fukushima,A.
  TITLE     Isolation of a cDNA encoding a widely expressed novel zinc finger
            protein with the LeR and KRAB-A domains
  JOURNAL   Biochim Biophys Acta 1353 (1), 13-17 (1997)
   PUBMED   9256059
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK129138.1, AK075886.1, AK142005.1, AK135506.1 and BP759768.1.
            
            [WARNING] On May 10, 2024 this sequence was replaced by
            NM_016684.3.
            
            On Mar 23, 2007 this sequence version replaced NM_016684.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK129138.1, AK142005.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849375, SAMN00849380
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-287               AK129138.1         1-287
            288-751             AK075886.1         282-745
            752-2412            AK129138.1         752-2412
            2413-3418           AK142005.1         2393-3398
            3419-3544           AK135506.1         595-720
            3545-4403           AK129138.1         3548-4406
            4404-4435           BP759768.1         27-58               c
FEATURES             Location/Qualifiers
     source          1..4435
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="13"
                     /map="13 7.76 cM"
     gene            1..4435
                     /gene="Zscan12"
                     /gene_synonym="2510038J07Rik; FPM315; mKIAA0426; zfp-96;
                     Zfp96"
                     /note="zinc finger and SCAN domain containing 12"
                     /db_xref="GeneID:22758"
                     /db_xref="MGI:MGI:1099444"
     exon            1..53
                     /gene="Zscan12"
                     /gene_synonym="2510038J07Rik; FPM315; mKIAA0426; zfp-96;
                     Zfp96"
                     /inference="alignment:Splign:2.1.0"
     exon            54..525
                     /gene="Zscan12"
                     /gene_synonym="2510038J07Rik; FPM315; mKIAA0426; zfp-96;
                     Zfp96"
                     /inference="alignment:Splign:2.1.0"
     CDS             124..1629
                     /gene="Zscan12"
                     /gene_synonym="2510038J07Rik; FPM315; mKIAA0426; zfp-96;
                     Zfp96"
                     /note="zinc finger protein 96"
                     /codon_start=1
                     /product="zinc finger and SCAN domain-containing protein
                     12"
                     /protein_id="NP_057893.2"
                     /db_xref="CCDS:CCDS26273.1"
                     /db_xref="GeneID:22758"
                     /db_xref="MGI:MGI:1099444"
                     /translation="MTSTSDTKVCKNQGGLLEIKMEEECKYTTRQDRNLQKNTYNRDV
                     FRKYFRQFCYQETSGPREALSRLRELCRQWLRPDLNSKEQILELLVLEQFLTILPGEL
                     QAWVQEQNPESVEEVVTVLEDLERELDELGYRASVQTEEQVTFQEVKPLATEQKPSVS
                     LQFVKAKPGCELAGREAQEEQVSGVETGNEPRNVTLKQGLWEGTEAEQNPASRLAKDA
                     LECEEAHNPGEESSGISHEDSQPLRNENGVNSPANSEYAKHQSICPGRKVHGCDECGK
                     SFTQHSRLIEHKRVHTGDRPYKCEVCGKTFRWRTVLIRHKVVHTGEKPYKCNECGRAF
                     GQWSALNQHQRLHSGEKHYHCNECGKAFCQKAGLFHHLKSHRRNRPYQCLQCNKSFNR
                     RSTLSQHQGVHTGAKPYECNDCGKAFVYNSSLATHQETHHKEKPFTQSGPIQQQRNHT
                     KEKPYKCSVCGKAFIQKISLIEHEQIHTGERPYKCAEGGKAFIQMSELTEH"
     exon            526..667
                     /gene="Zscan12"
                     /gene_synonym="2510038J07Rik; FPM315; mKIAA0426; zfp-96;
                     Zfp96"
                     /inference="alignment:Splign:2.1.0"
     exon            668..4418
                     /gene="Zscan12"
                     /gene_synonym="2510038J07Rik; FPM315; mKIAA0426; zfp-96;
                     Zfp96"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1923..1928
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Zscan12"
                     /gene_synonym="2510038J07Rik; FPM315; mKIAA0426; zfp-96;
                     Zfp96"
                     /note="hexamer: CATAAA"
     polyA_site      1940
                     /gene="Zscan12"
                     /gene_synonym="2510038J07Rik; FPM315; mKIAA0426; zfp-96;
                     Zfp96"
                     /note="major polyA site"
     regulatory      4384..4389
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Zscan12"
                     /gene_synonym="2510038J07Rik; FPM315; mKIAA0426; zfp-96;
                     Zfp96"
                     /note="hexamer: AATAAA"
     polyA_site      4418
                     /gene="Zscan12"
                     /gene_synonym="2510038J07Rik; FPM315; mKIAA0426; zfp-96;
                     Zfp96"
ORIGIN      
        1 gacttccggt tcctgggagg gctggattcc cttccctgcg caggagcgac gcggtccact
       61 gggtaagaag atttaccaag gagttattac ttgaaagatt gatacatctt ttatctagct
      121 acgatgacat ctactagtga taccaaggtc tgtaagaacc agggtggact tttggaaata
      181 aaaatggagg aagaatgtaa gtataccacc agacaagata ggaacctaca aaagaacact
      241 tataacagag acgtcttccg aaaatacttc agacagtttt gctaccagga aacttctgga
      301 ccccgggagg ctctgagccg gctgcgcgag ctctgcagac agtggctgcg gccggacttg
      361 aacagcaagg agcagatcct ggagctgctg gtgctggagc agttcctgac catcctgcca
      421 ggggagctgc aggcctgggt gcaggagcag aatccggaga gtgtggagga ggtggtgact
      481 gtgctggagg atttagagag agagcttgat gaactaggat accgggcctc agtccaaact
      541 gaagaacagg taacgtttca ggaggtgaag cctttggcaa cagagcagaa acccagcgtg
      601 tcccttcagt ttgtcaaagc caagcctggg tgtgaacttg caggccgtga agcccaggag
      661 gagcaagttt caggtgttga gactggcaat gagcccagga atgtcactct aaagcaaggc
      721 ctctgggaag ggacggaagc agaacagaat cctgctagca gattagcaaa ggatgcactt
      781 gagtgtgaag aagctcacaa ccctggagaa gagtcttctg gtatttccca tgaagacagc
      841 cagcctctgc gtaatgaaaa tggtgtaaat tctcctgcga actcagagta cgctaaacac
      901 cagagcatct gtccagggag aaaagtgcat gggtgtgatg agtgtggaaa gagttttact
      961 cagcactcgc gcctcataga gcacaagaga gtccacactg gagacaggcc ctacaaatgt
     1021 gaagtatgtg ggaaaacttt ccgatggagg actgttctta ttcgacacaa ggtggtccac
     1081 actggagaga aaccgtataa atgtaatgaa tgtggcaggg cttttggcca gtggtcagca
     1141 cttaaccaac atcagagact tcactcggga gaaaagcact accactgtaa cgaatgtggc
     1201 aaagcctttt gccagaaagc aggcctcttt caccatctca agagccatag aagaaacaga
     1261 ccttatcaat gtcttcagtg taataaaagt tttaatcgcc gttctacact ttctcagcat
     1321 caaggagttc acactggagc aaaaccctac gaatgcaacg attgtgggaa agcttttgtt
     1381 tataactcat ctcttgctac ccatcaggaa acccatcaca aggagaaacc cttcactcaa
     1441 agtggtccta ttcagcagca gaggaaccac accaaggaga agccctacaa atgcagtgta
     1501 tgtggaaaag catttattca aaaaataagt cttatagaac acgaacaaat tcataccgga
     1561 gagagaccgt ataaatgtgc tgagggcggg aaggccttta ttcagatgtc agaactcaca
     1621 gaacattagg gaacccacac tgggaaggcc ctacaagtgt gatgaatgtg gcaagacctt
     1681 cagacaggag tcagagcttg ctgagcacta gagaattcat tatagaagtg gtccctaaaa
     1741 gtgtaatggg cgtggggaat tgttcacgta gaactcagct cttactcatc atcagactag
     1801 tcacaaaaga gcaagtactc tgtgtgatga ctacagggaa gctacctcac ggtgtcggct
     1861 gatgaagagt attgtatttg taatgctttg tggtgacatt tcagcctttg ctgttacgag
     1921 accataaata tttgatgagc tccctctgta tactgtcctt tgtgtgtggc tgtggaggaa
     1981 gtctaactcc agatttctta gaacatttac aactaagcca gagatgtgga agtctaccat
     2041 agttaaagag aagggcagtg gaattgatgc tcagcgtgct ttagaattaa agtagtagaa
     2101 aatatttttg aaggaccaac tccttgtaca cctgctcagg aaagatttct gaaattattt
     2161 ttattgaaaa taagtgtttg gtgggtagat ctggaagaga aaagggagaa cacttttggt
     2221 gaaataggtg agcagaagca agagtgcagg tagtttggaa gccagcctac tagagagttg
     2281 ttttaagtgt tgagctgatg ggcattaaat ggaaatagct tgaggacaga gtaggaggat
     2341 ggtctaggaa tgctagccaa tcaatgcttg tggtgcactg acagagcact cttctccttt
     2401 gtctctaaaa tatctctaag tatacatgta ttgtagaagc gatatggtca ttcatacttg
     2461 tttatcacag catatctcaa gatgctgaag caggaggatt aggagttcaa ggcctgcctg
     2521 agctacatga aacctaaaga aaaagaaagc aggatgcagg aggctggaga gatggctcag
     2581 cagttaagag cacttgttgc tcttgtagat aacccgggtt tggtttctat cacccacatg
     2641 gtgatggctc aaagccatct ataactggtt ctagggcatc tgattccttc ttctgatctg
     2701 taggcatgag ggacaagtgt gtatgtacat gcaggcaaac cactcctaca cataaatagt
     2761 gcagatgaca gctgttatac cacagcgagg aagaccagaa accaagttct tgtatctggc
     2821 ttccaatcca gtctgtgaca tccactatac cccaacatgg gcaaacatca acatcacctg
     2881 tggtgtcgtg tatttaaaat gtctgtgtgc actgaatgag gtcctgggtt caatctcaaa
     2941 gccttgaagg tttacctggt catggaagta ttgtagtccc agcctctcag aagactgaga
     3001 caggatgtct tgccagcctt gataaaacac agtaaaaacc tgtctctgag taagtgttcc
     3061 tgtcccactc aacatgctca gtatgtctga ggtgtcattg tgactcttga tgaacaggaa
     3121 ccactacaga ttcctagaac atttgtcccc agctccacaa ggtgaacacc attagggcca
     3181 aacactagaa ttttggtgtg gtctttccgt tatttcgcgt cttaagtatt ttatggctgg
     3241 ggaaagggct ggagagatgg ctcagtggta gttaagacca ctggttgctc atcctgaaga
     3301 tgtgagttca tttcccagca cccacgcggc agctcagacc tgtccataac tagttccagg
     3361 gctctgatac cctacacaga catgtatcca ggtagaacgt caacataaaa ataaattgta
     3421 aaaacaaaaa aaaaaacccc acatatctta aggtcttttt gtcctagttc tgttgataac
     3481 tgggttctat attcttgaga ttcggtgtag ccttttggtt tacatacttt actgagtgcc
     3541 taaaagatgt tgctgctctc cagtaggagg ctgccactca ccacccttgt gttgttgagt
     3601 cagaacaact gctttggttg agagcctctg gtgatttaat tagtgagtgt ttgaagtctc
     3661 aggatactag aactgttgag aaaaaggtct ggcttccttc tttggtaaaa ggaaagttgg
     3721 gtttatttgg gagacgtgat gtgattcacc taacattggg ttgtagacac aggacaaaga
     3781 atctactgaa cagattaatg tgagcagatt aatccgtggg cacctttgtc cattcattgg
     3841 ttaggacaat gtgataggac cgacttccat gactaaattc atggaacatg cttgcatgga
     3901 tgttatgcag gtgcctagcg ctgagctcca ctcccgctcc ttgtgttctt taaacaaaag
     3961 ttgctgccat caacttattt ctaccattct tttcactgtc gcttatgtga gattgtctaa
     4021 gataggagat ttataggaga ggttatagtc tgtctctgag gctttattaa ccattagata
     4081 gtaatagact ctaacagcca ggttccatgt cattgccttt atctcaggat gatgatgatg
     4141 gaacaagaaa tgttgtacac atagtacctc agaatcaaac tttccatatc caaatgacga
     4201 ccctgccaca gactagctct cagtggttaa gagcacttct tgctcttttc ttgcagaaaa
     4261 ctggcaccca catggaggct cacaacagcc tgtttgtaac ttggttttgg ggagatcata
     4321 tgccctttgc tagaattcta gtgtgtcttt gcagtgtgaa cattctctgt atggataaag
     4381 taaaataaat ctttttttaa gtttctagtt tctcataaaa aaaaaaaaaa aaaaa
//
