LOCUS       NM_001285885            5036 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus zinc finger, MYM-type 6 (Zmym6), transcript variant 1,
            mRNA.
ACCESSION   NM_001285885
VERSION     NM_001285885.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 5036)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 5036)
  AUTHORS   Yoshida,Y., Han,B., Mendelsohn,M. and Jessell,T.M.
  TITLE     PlexinA1 signaling directs the segregation of proprioceptive
            sensory axons in the developing spinal cord
  JOURNAL   Neuron 52 (5), 775-788 (2006)
   PUBMED   17145500
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK035136.1 and BC094598.1.
            
            Transcript Variant: This variant (1) represents the longest
            transcript and encodes the longest isoform (a). Both variants 1 and
            2 encode isoform a.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC094598.1, SRR1660825.111898.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-27                AK035136.1         3-29
            28-5036             BC094598.1         1-5009
FEATURES             Location/Qualifiers
     source          1..5036
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="4"
                     /map="4 61.25 cM"
     gene            1..5036
                     /gene="Zmym6"
                     /gene_synonym="9330177P20Rik; D4Wsu24e; Zfp258"
                     /note="zinc finger, MYM-type 6"
                     /db_xref="GeneID:100177"
                     /db_xref="MGI:MGI:106505"
     exon            1..1164
                     /gene="Zmym6"
                     /gene_synonym="9330177P20Rik; D4Wsu24e; Zfp258"
                     /inference="alignment:Splign:2.1.0"
     CDS             1075..4824
                     /gene="Zmym6"
                     /gene_synonym="9330177P20Rik; D4Wsu24e; Zfp258"
                     /note="isoform a is encoded by transcript variant 1; zinc
                     finger protein 258; likely ortholog of H. sapiens zinc
                     finger protein 258 (ZNF258); transposase-like protein;
                     probably fused to an N terminal zinc finger domain"
                     /codon_start=1
                     /product="zinc finger MYM-type protein 6 isoform a"
                     /protein_id="NP_001272814.1"
                     /db_xref="CCDS:CCDS18664.1"
                     /db_xref="GeneID:100177"
                     /db_xref="MGI:MGI:106505"
                     /translation="MKEPLDGGCDKAMAQQGLLDRIKEEPDDAHEYGPQESELKISAV
                     FSAGDTSLGFQVGLPSSGPSTSFPAVPAAQVFCFGCKKLLLKGQPTYRKAGFAQLYCS
                     MGCIIRFSSAVCVPPLPKRTCAHCSKDILNPMDVITTQFENSSLCKDFCSQSCLFSYE
                     LKKPVVTIYTSGISAKCSMCQKGTDNLAPKPLYALGNSSRLSAEMIETTNDSGRTELF
                     CSINCLSAYRIKTVISSGIQVVCHSCKTAAVPQYHLAMSNGTICSFCSSNCVLAFQNV
                     FNKPKGRNSSLAPISQGQEVRSTPVQSAVLARKDAPASSFSSPISNPAATALETLAKQ
                     SHQIALTHLFLKLTCLQCSLLFATKPELLFYKGRMFMFCSKACCDEYKRQNKVKALCD
                     YCKLQKTIEDTVRFSGIDKPFCSEVCKVLSARDFGERWGSYCKTCSYCLQTSANFVEN
                     QLEGKLQVFCCEDCMSKFTALLHQTARCDGCKRQGKLSESLKWRGNIKYFCNLFCVLQ
                     FCHQYSVNDPIPQRKVFVLPKPAQVIIPKAQTAVTALPSPRIATTPVITSVTSLAKIP
                     ALQPTRNTNNVLTGAGPTEVTKIIGNGSAQAPAERLQPLQPPKLLKNKGILCKPVTQT
                     KATSCRPHTHHAACQTDLPLPEWKSEEPESPPAKRRRVDFSQTYNAEYIRFGFIICSG
                     SEESSPSPQCVICGEVLPSESVMPVSLSNHLKAKHSDLENKPVDFFEEKSLEMECQNS
                     SLKKCLLVEESLVKASYLIAFQIAARNKPFSIAEELIKPYLVEMCSEVLGSSAGEKMK
                     TIPLSNSTIGCRIKKLSDDIEDQLLQKVRESRWFALQVDESSEATEVPLLLCYVRFID
                     YDRGDVKEELLFCTEMPSPSTDLEVFELINKYIDSRSLNWNHCVGFCTDGAASMTDRY
                     FRLRSKIQEIAKNTVTFTHCFIHREHLAAKKLSPCLHEILLQSSQILSFVKNSASDSQ
                     MLTILCEEMGSEHVNLPLNAEVRWLSRGRILTRLFELRHEIEIFLNQKHSDLARYFHD
                     EEWIAKLAYLADIFSLINKLNSSLQGTMTTFFNLYNKVDVFQKRLKMWLKRAQENDYG
                     MFPLFSEFLDSSDVSVKNIASIIFEHLEGLSQIFHACYPPEEDLRSGNLWLTDPFATY
                     HSNNLTDSEEEKLAVLSADTGFQSVHKSMSVTQFWVNAKTSYPKLHEKALKLLLPFSS
                     TCLCDATFSALTASKQRDLRTCGPTLRLAVTSLVPRIEKLAKEKE"
     exon            1165..1231
                     /gene="Zmym6"
                     /gene_synonym="9330177P20Rik; D4Wsu24e; Zfp258"
                     /inference="alignment:Splign:2.1.0"
     exon            1232..1457
                     /gene="Zmym6"
                     /gene_synonym="9330177P20Rik; D4Wsu24e; Zfp258"
                     /inference="alignment:Splign:2.1.0"
     exon            1458..1629
                     /gene="Zmym6"
                     /gene_synonym="9330177P20Rik; D4Wsu24e; Zfp258"
                     /inference="alignment:Splign:2.1.0"
     exon            1630..1780
                     /gene="Zmym6"
                     /gene_synonym="9330177P20Rik; D4Wsu24e; Zfp258"
                     /inference="alignment:Splign:2.1.0"
     exon            1781..1896
                     /gene="Zmym6"
                     /gene_synonym="9330177P20Rik; D4Wsu24e; Zfp258"
                     /inference="alignment:Splign:2.1.0"
     exon            1897..2172
                     /gene="Zmym6"
                     /gene_synonym="9330177P20Rik; D4Wsu24e; Zfp258"
                     /inference="alignment:Splign:2.1.0"
     exon            2173..2323
                     /gene="Zmym6"
                     /gene_synonym="9330177P20Rik; D4Wsu24e; Zfp258"
                     /inference="alignment:Splign:2.1.0"
     exon            2324..2496
                     /gene="Zmym6"
                     /gene_synonym="9330177P20Rik; D4Wsu24e; Zfp258"
                     /inference="alignment:Splign:2.1.0"
     exon            2497..2644
                     /gene="Zmym6"
                     /gene_synonym="9330177P20Rik; D4Wsu24e; Zfp258"
                     /inference="alignment:Splign:2.1.0"
     exon            2645..2812
                     /gene="Zmym6"
                     /gene_synonym="9330177P20Rik; D4Wsu24e; Zfp258"
                     /inference="alignment:Splign:2.1.0"
     exon            2813..2850
                     /gene="Zmym6"
                     /gene_synonym="9330177P20Rik; D4Wsu24e; Zfp258"
                     /inference="alignment:Splign:2.1.0"
     exon            2851..2995
                     /gene="Zmym6"
                     /gene_synonym="9330177P20Rik; D4Wsu24e; Zfp258"
                     /inference="alignment:Splign:2.1.0"
     exon            2996..5021
                     /gene="Zmym6"
                     /gene_synonym="9330177P20Rik; D4Wsu24e; Zfp258"
                     /inference="alignment:Splign:2.1.0"
     regulatory      4887..4892
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Zmym6"
                     /gene_synonym="9330177P20Rik; D4Wsu24e; Zfp258"
                     /note="hexamer: AATACA"
     polyA_site      4911
                     /gene="Zmym6"
                     /gene_synonym="9330177P20Rik; D4Wsu24e; Zfp258"
                     /note="major polyA site"
     regulatory      4921..4926
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Zmym6"
                     /gene_synonym="9330177P20Rik; D4Wsu24e; Zfp258"
                     /note="hexamer: ATTAAA"
     polyA_site      4939
                     /gene="Zmym6"
                     /gene_synonym="9330177P20Rik; D4Wsu24e; Zfp258"
                     /note="major polyA site"
     regulatory      4984..4989
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Zmym6"
                     /gene_synonym="9330177P20Rik; D4Wsu24e; Zfp258"
                     /note="hexamer: ATTATA"
     polyA_site      5021
                     /gene="Zmym6"
                     /gene_synonym="9330177P20Rik; D4Wsu24e; Zfp258"
                     /note="major polyA site"
ORIGIN      
        1 gtggcagctc atcacgtgac cggcggcggg ctgcgccgcg gtggtgccgt agcatcctca
       61 ggctcgctgc agttggcggc tcgcgcgctc cgttggagac tgagttcctc ctctggcctt
      121 tgggggacag gctggggaat tctggttgcg aacgggaacg ccggagagct tgcgacattc
      181 agaggaggga tacgcgcctg tagagtgtta caactgtggc aagtggtgga aagttctcga
      241 cccggcttcg caacagggtt ttaaaaaacc tgttgtttct atggctggct ggaattgatg
      301 acaggccttt tgcgagggtt tcctttatag cttggcttac atttgtacta ccgtttggga
      361 atctgaagag agcccagaca ggggtttcta gcagccattc tcaaccctca cagggtcgca
      421 tatcaaatat ttacattaca attcgcaatt agcaaaatta cagttatgac ggagccacga
      481 aataatttta tagttggggg tcgccacatt aaccgagttt atgaatgttg agaatcactg
      541 gtttatagga agacgttagg gggagttgcc tccagaatga ccagttggcc cacctctaaa
      601 tgggaaccta gcgttctagt tgtgatgacg tctgaggctc tgaagtggct ttaggatgag
      661 aaatcggttc ttattgttag tgcaggctga ggtagaggca aaggtgaggc ctcacttgga
      721 gcagacatga gtcacatgtc agtgtccaca caatcagaaa ttaagtactg agtccagctg
      781 tccacttgct agggtcctcc tgtggcgtgt tcagccagtc tgtatcgcaa caacctccaa
      841 tatagtgaag accatagtgc ttgtctaaga cttttctcat tggaaggtag ctaatccagg
      901 agcaaaaaga acagttagtc ctagtcccag aagggtgttg ctcaaatgct cgatcctgaa
      961 gctattaaca tgttagtatg aaggaaaaca aaacccaagt accaatcctt tatattatgt
     1021 tttaggcgtc atcttagttt tagatgggat aagaactcgg cataagcact tagaatgaaa
     1081 gaacctttgg atggtggatg tgacaaagca atggcacaac aagggcttct ggacagaatt
     1141 aaagaagaac ctgatgatgc tcatgaatat ggacctcaag aaagtgaact aaaaatcagt
     1201 gccgtgtttt cagccggtga cacttctctc ggctttcagg ttggtctacc gtcatccggc
     1261 ccgagtacat catttcctgc agttccagct gctcaagtgt tttgttttgg ttgtaaaaaa
     1321 ctgcttctta agggacaacc tacctaccgg aaggccggat ttgcccagct ttactgctcc
     1381 atgggatgca tcatcagatt ctcctccgca gtctgcgtgc cacctcttcc caagagaacc
     1441 tgtgcacatt gctccaaaga cattttaaat ccgatggatg tgatcacaac tcagtttgaa
     1501 aattcctctc tctgcaaaga tttctgcagc cagtcatgcc tattttctta tgagctaaag
     1561 aagcctgttg ttaccatata taccagtggc atttcagcaa agtgcagtat gtgtcagaag
     1621 ggcactgata atttggcccc gaagccactc tatgccttgg ggaattcatc gaggctgtct
     1681 gctgaaatga ttgagactac aaatgactca ggaagaacag agcttttttg ctctattaac
     1741 tgcttatctg cgtacagaat taagactgtt atttcttcag gtatacaggt tgtgtgtcat
     1801 agttgtaaaa ctgcagcagt ccctcagtat cacctagcaa tgtcaaatgg aactatttgc
     1861 agtttctgta gctccaactg tgtgctggct ttccagaatg tatttaacaa gccaaaggga
     1921 agaaactctt cattggcacc catatctcag ggccaagagg tgaggagcac acctgtgcag
     1981 tctgcagtgt tagcaagaaa agatgcccct gcctcttcct tcagtagccc catcagcaac
     2041 cctgctgcaa cagccctgga gactcttgct aaacagtccc accagattgc tttgacccat
     2101 ttattcttga aactcacgtg cctgcagtgt agtcttctgt ttgccacaaa gccagagctg
     2161 cttttctaca agggtaggat gtttatgttt tgcagcaagg cttgctgtga tgaatacaaa
     2221 aggcagaata aagttaaggc cttgtgcgac tactgtaagc tacagaagac catagaggac
     2281 acggtgcggt tctcagggat tgacaagccg ttctgtagtg aagtttgcaa ggtcctctcg
     2341 gctcgagact ttggggaaag atggggaagc tactgtaaga cgtgcagtta ctgtttacag
     2401 acgtctgcaa attttgtgga aaaccaactg gaaggcaagc tccaggtttt ttgctgtgaa
     2461 gattgcatgt ctaagtttac agctctgttg catcagacag ccaggtgtga tggttgtaaa
     2521 cggcagggta agctaagtga gtccttgaaa tggagaggca acatcaaata cttctgtaac
     2581 ctgttctgtg tcttgcagtt ttgccatcag tatagtgtga atgacccaat tccacaaaga
     2641 aaagtatttg tgctcccaaa gccagcacag gtaattattc ctaaggcaca aactgctgtg
     2701 acagcactcc cttctccaag gatagctaca acaccagtta taaccagtgt gacatcattg
     2761 gcaaaaatac ctgcacttca gcccaccagg aacacgaaca atgttttaac aggtgctggt
     2821 cctacagagg taacaaagat cattggaaat ggaagtgcac aggcacctgc tgagagactt
     2881 cagcctctgc agccccccaa gcttctgaag aacaaaggca tattgtgcaa gccagtcacc
     2941 cagaccaagg ccacctcttg caggccacat acccaccatg ctgcatgcca gacagattta
     3001 cctctgccag aatggaagag tgaagaacct gagtctccac cggcaaaaag aagaagagta
     3061 gacttttccc agacttacaa tgcagagtat atcagattcg gtttcattat ctgttctgga
     3121 tcagaggaaa gttcaccaag cccacagtgt gtcatttgtg gagaggtctt acctagtgaa
     3181 agtgtgatgc cagtaagtct ttctaaccat ttgaaggcaa aacattcaga cttagagaac
     3241 aagcctgtag acttttttga ggaaaagtca cttgaaatgg aatgtcaaaa tagttcttta
     3301 aaaaagtgtt tactagttga agagtcactt gtgaaagctt cttatttaat cgctttccaa
     3361 attgccgcca ggaataagcc attctcgatt gctgaagaat taattaaacc atatttagta
     3421 gaaatgtgtt cagaagtttt aggttcaagt gctggagaaa aaatgaaaac catccctctt
     3481 tctaatagca caattgggtg caggatcaag aaactgtctg atgacatcga agatcagctg
     3541 ctgcagaagg tcagggagtc caggtggttt gcccttcagg tggacgagtc gtctgaggcc
     3601 acagaggtgc cgcttctcct ctgctatgtc cgcttcatcg actatgaccg tggagatgtg
     3661 aaagaagaat tacttttttg cactgaaatg ccttctccga gcacagatct tgaagtgttt
     3721 gaattaataa ataaatatat tgatagcaga tctctgaatt ggaaccattg tgttggtttc
     3781 tgtactgatg gggccgcaag catgactgac aggtattttc gtttaaggtc aaaaattcaa
     3841 gaaattgcca agaatacagt gacatttaca cattgtttca ttcaccgtga acacttagca
     3901 gccaaaaagc tatctccatg cttacatgaa attcttttgc agtcatcaca aattttaagc
     3961 tttgtaaaga acagtgcttc agattcacaa atgttgacaa ttttgtgtga agagatggga
     4021 tctgagcatg tgaatttacc acttaatgct gaagtacgct ggctgtcgag agggagaatt
     4081 ttaacaagat tatttgaact gagacatgaa attgaaatat ttttaaatca aaagcattca
     4141 gatttggcca ggtatttcca tgatgaggaa tggattgcaa agctagccta tctagcagat
     4201 atattttcac ttataaataa attaaattca agtctccaag gaaccatgac tacttttttc
     4261 aatttgtata ataaagttga cgtatttcag aaaaggctaa aaatgtggtt gaagcgtgca
     4321 caggagaatg attacggcat gttccctctg ttttctgagt tcttggactc atcagatgta
     4381 agtgtgaaaa acattgctag catcattttt gagcacctgg aaggactttc tcagatattc
     4441 catgcctgtt acccaccaga agaggacttg cgttccggaa acctgtggct cacagatcct
     4501 tttgccactt accacagtaa caatctcact gactccgagg aagagaaact cgccgtgtta
     4561 tctgccgata cgggatttca gtcagttcac aagtcaatgt ctgtcacaca gttttgggtc
     4621 aatgcaaaga caagttatcc caagctccat gaaaaggcat tgaagctgct gctgcccttc
     4681 tcaagcacct gtctgtgcga tgccaccttt tcagccttga ctgcatccaa acagagagac
     4741 cttcggactt gcggtcccac cctaagactg gcagtcacat cattagttcc aaggatagaa
     4801 aagttagcaa aggagaaaga gtagtatccg tattgcttat catcagagtg tataattttg
     4861 tgttaaattt tgtataagta tcctaaaata caatttgcta atgtatctgt attttcagtg
     4921 attaaatgtt ttaatatttt tcctttgttg tacagggatt taagaattgt ggaactgagc
     4981 ataattatat gtaattttaa taacacaagg gagaaaatgt aaaaaaaaaa aaaaaa
//
