LOCUS       NM_001253753            5360 bp    mRNA    linear   ROD 03-JUN-2024
DEFINITION  Mus musculus zinc finger, MYM-type 5 (Zmym5), transcript variant 3,
            mRNA.
ACCESSION   NM_001253753
VERSION     NM_001253753.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 5360)
  AUTHORS   Guo,G., Huss,M., Tong,G.Q., Wang,C., Li Sun,L., Clarke,N.D. and
            Robson,P.
  TITLE     Resolution of cell fate decisions revealed by single-cell gene
            expression analysis from zygote to blastocyst
  JOURNAL   Dev Cell 18 (4), 675-685 (2010)
   PUBMED   20412781
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC154361.2.
            
            Transcript Variant: This variant (3) differs in the 5' UTR,
            compared to variant 1. Variants 1-3 encode the same protein.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK156501.1, SRR1660811.59318.1
                                           [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849374,
                                           SAMN00849375 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-131               AC154361.2         82952-83082
            132-251             AC154361.2         83557-83676
            252-700             AC154361.2         89553-90001
            701-791             AC154361.2         90177-90267
            792-1074            AC154361.2         95224-95506
            1075-1237           AC154361.2         96586-96748
            1238-1444           AC154361.2         97606-97812
            1445-5360           AC154361.2         99916-103831
FEATURES             Location/Qualifiers
     source          1..5360
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="14"
                     /map="14 28.45 cM"
     gene            1..5360
                     /gene="Zmym5"
                     /gene_synonym="9830124H08Rik"
                     /note="zinc finger, MYM-type 5"
                     /db_xref="GeneID:219105"
                     /db_xref="MGI:MGI:3041170"
     exon            1..131
                     /gene="Zmym5"
                     /gene_synonym="9830124H08Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            132..251
                     /gene="Zmym5"
                     /gene_synonym="9830124H08Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            252..700
                     /gene="Zmym5"
                     /gene_synonym="9830124H08Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             296..2179
                     /gene="Zmym5"
                     /gene_synonym="9830124H08Rik"
                     /codon_start=1
                     /product="zinc finger MYM-type protein 5"
                     /protein_id="NP_001240682.1"
                     /db_xref="CCDS:CCDS49505.1"
                     /db_xref="GeneID:219105"
                     /db_xref="MGI:MGI:3041170"
                     /translation="MEAHLADMESSGGPTSSLAGTSRNTHVEDDDVVFIESVQPPICA
                     PAIPNERNFVFASSKHENPPGTDSTISPSWRDLTSQKGNLCETIVIDDEGDTDTNGGE
                     EKNPTDFIEWGPNGNKSSTKNVDFPIASLSRSKTKTAVGPFNPGRIDVTDAFQNGRFA
                     VHHNPDSWISQSASFPRNQKQQGVDSLSPVASLPKQIFQPSNQQPTKPVKVTCANCKK
                     PLQKGQTAYQRKGSAHLFCSTTCLSSFSHKRTRKTRNVMCKKDSPVRTTTIVPPVESS
                     KSLQGFYNASLSPYENCQSLRKEVFTKSRCIICNKLGEVRHEISVNSITHKLCSNNCF
                     NEYRLTNGLIMNCCEQCSKYMPKSTGHSILITGQQKRFCCQNCADEYKEIMEAKSKLL
                     LLQNRKRNAIREENEKRLRESSGTLSGNTGDIPEKKEKSSEIIKVAADCSLDTSSEEQ
                     NVNLPCSVAVISDTFKEQLGDKNSEELDMSILPSLDPGSWPRILNMKQREFLVKNNPP
                     QIRNFNFPKDSAGKKFSETYYTRILPNGEKGTRPWLLYSASKDSVFCLYCRLFGEGKN
                     QLRNENGCKDWHHLSHLLSKHDESEMHINNSVKYSKLKSDLENKTNEATEGGEDCVQL
                     LYT"
     exon            701..791
                     /gene="Zmym5"
                     /gene_synonym="9830124H08Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            792..1074
                     /gene="Zmym5"
                     /gene_synonym="9830124H08Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1075..1237
                     /gene="Zmym5"
                     /gene_synonym="9830124H08Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1238..1444
                     /gene="Zmym5"
                     /gene_synonym="9830124H08Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1445..5360
                     /gene="Zmym5"
                     /gene_synonym="9830124H08Rik"
                     /inference="alignment:Splign:2.1.0"
     polyA_site      3022
                     /gene="Zmym5"
                     /gene_synonym="9830124H08Rik"
                     /note="major polyA site"
     regulatory      5325..5330
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Zmym5"
                     /gene_synonym="9830124H08Rik"
                     /note="hexamer: AATAAA"
     polyA_site      5360
                     /gene="Zmym5"
                     /gene_synonym="9830124H08Rik"
ORIGIN      
        1 gcgtcgggag cctcccaccg agccgggctt aacagcccgc ggcggccggt gtcgcggctg
       61 ctgcgtcggg gcctgagggt gcgctggggg ccgcgctgat gtccagggcg gcttcgcgtg
      121 cggccggagg gattcgagga cgcgtttact cttcgactca gctgcgcgct ctactcataa
      181 ttctgaaact ggaaagaaca tatgagcttg gcctgctgtc gtttagttga tctattgttt
      241 atttggagaa gattcatcag tgggaagact agttgactgt acattggact tggacatgga
      301 agctcatctc gcagatatgg aatcatctgg gggtccaact agttctttag ccggtacatc
      361 tagaaacaca catgtggaag atgatgatgt tgtatttatt gaatcagtac agcctccaat
      421 ttgtgctcca gcaataccta atgaaagaaa ctttgtattt gcttcctcaa aacatgaaaa
      481 tccaccagga actgattcca caatttcccc ttcttggaga gatttgactt ctcagaaggg
      541 aaatctatgt gaaacaattg taattgatga tgaaggggac acagacacaa atggagggga
      601 ggagaaaaat cctaccgact ttattgaatg gggaccgaat ggaaataaaa gtagtaccaa
      661 aaatgtggat ttccccattg ccagtctatc aagaagcaag accaagactg cagtaggacc
      721 ttttaatccc ggtaggatcg atgtcacgga tgcgtttcag aatggaagat ttgcagttca
      781 tcacaatcct gattcttgga tctcccagtc agcatcattt cctcgtaacc agaaacaaca
      841 aggggtggat tctttatcac cagtggcctc acttcctaaa cagatattcc agccctcgaa
      901 ccaacaaccc actaaaccag ttaaagtcac ttgtgcaaac tgcaaaaaac ctctacagaa
      961 ggggcagaca gcttaccagc gaaaaggatc agctcacctc ttctgttcaa ccacctgcct
     1021 ttcttctttc tcccataagc gtactcgaaa gacacggaat gtaatgtgta aaaaagattc
     1081 tcctgtgaga accacaacta ttgttcctcc agtggagtca agcaagtcct tacaaggatt
     1141 ttataatgca tcgctatctc cctatgaaaa ctgccagagt cttaggaaag aagtttttac
     1201 taagtcaaga tgtataatct gtaataaatt aggagaggtt cgccatgaaa tcagtgttaa
     1261 cagtataaca cataagctgt gcagtaataa ttgctttaat gaatacagat tgacgaatgg
     1321 tctaataatg aactgctgtg aacagtgtag caagtatatg cccaagagta ctgggcacag
     1381 cattctgata acaggtcagc aaaagagatt ctgctgccag aattgtgctg acgaatataa
     1441 agagataatg gaagcaaaat caaaactact gcttttacaa aatagaaaaa ggaatgctat
     1501 cagagaagaa aatgaaaaac gattacgtga atcatcaggt acactttcag gaaacacagg
     1561 agacataccc gaaaaaaagg aaaagtcttc agagataata aaagtcgcag cagactgtag
     1621 cctagataca tcatcagagg aacaaaatgt gaatttacct tgttctgtgg cagtaatatc
     1681 tgatacattt aaagagcaac taggagacaa aaattcagag gaattggata tgtccatttt
     1741 accttctttg gatccaggtt catggccccg aattttgaat atgaaacaac gtgaatttct
     1801 tgtcaaaaac aatccacctc aaataagaaa ttttaatttt ccaaaagata gtgcaggcaa
     1861 gaagttttca gaaacgtatt atacccgaat tcttccaaat ggtgaaaagg gcaccagacc
     1921 ctggctgctc tactcagcct cgaaagactc tgtgttttgc ctgtattgca gactctttgg
     1981 ggaaggaaaa aaccaactga gaaatgagaa tgggtgcaaa gattggcatc atttgtcaca
     2041 tcttcttagt aaacatgacg aaagtgaaat gcacatcaac aatagtgtta agtattcaaa
     2101 attaaagtct gacttggaaa ataaaaccaa tgaagctaca gaaggtgggg aagattgtgt
     2161 gcagctactg tacacataat gtcctgtctg ctctacttat ggcagtgtct gcagtaccca
     2221 gacatacact gtgtaagagg accttacagg agctcattag caatatgtct aacagcaaac
     2281 aaatagtaaa aaatgctcct gttctaaacc taaaagcaat tttcgagagt gtagtcattc
     2341 ttgcagactt tagcaaaggc agtttgagct ttgtcactgt tagggtttcc accttgtaaa
     2401 atgttgttgg agaacttgca cttaatggcc taagagcaag aggtggcaag atgcatatgt
     2461 aacaagctaa agaaaatgca ttcaggccac atggtggcgg tgtgcacctt taatctcagc
     2521 actcagacac agagagttgg atatctgtga gctctaggcc agcctggtct gcagagcaag
     2581 ttccaggaga gccaaggtat acacaaaccc tgtcttgaaa aaccaaaaag aaggaaaaaa
     2641 agaagaaagt gcattcaaac agcttaagaa gcaacagctg tttgttatta aaccaaattg
     2701 agttttattt ctttaaaaca ttttttgtgc aaaacagtta tttgttgtgg taaatagaag
     2761 taatttgtgt tttattgatt ttatatttct gtttccaact taatgtgtaa atgttttagt
     2821 tttgttatga gaattataaa gaatatatag ttattagtat aaatataaga attaaaatgt
     2881 ggtatgtata tgtgtgtata catatatata tgtatgtata tatagttaac ttttcagtgt
     2941 tgttaatttt tcttgtgaaa gtatactcta tgtgtgaaat ttgagaaagt atgaatctaa
     3001 aaaaaaattt cttcagactt gatttatttt tgttttcttg tgtaaaagcc cttacttata
     3061 tgaaactgag aatgatggca ctcaggaggc aggggcaggt ggatctctga attcaaagcc
     3121 agcctggtgt gcagagcaag tttcaggaca actggggcta catatctcaa aaaacaaaga
     3181 aaaaacttgt ggtagctaca actggagctt gggtcttctg gatgaagatt ctcttgtggg
     3241 ttttcacaag tttgtcactg aattcctgaa aaggagactt agtgatgaca gtctctttcc
     3301 agaggctagg ggccaagtag ctgtaggtgt tagggtggcc tcaacacaat tgccaagggt
     3361 ggcagggcaa cccctgactg atggtaacag taatcagtac tggctggcca ccagcaatag
     3421 cttcttgggc acaggagcag gcacaataca agtgtccgtg gagacaggga agagatgtac
     3481 caacacagag gcacagtcac ctgttacctt gcatagaact gtggcgcttg tcagtcttgt
     3541 ttctccagta gcctctccac actgggagag tggaaagctt ggccgagatg atggtggcct
     3601 tttggatggc agtggctacc tccttagagc acctaacacc aagaccaatg tgaccattgt
     3661 agtccccaaa agcctttacc tggaccgatg ctcagccctc gtctgctctc tgcactggca
     3721 tggtctttag agcctcatcc ttaagtaaaa agtcaacttc agacttccta atgggcaggg
     3781 agaacaaaca ggcaggtctc ttccagggac ttggtcttca tgtccttgac caggtagtcc
     3841 agcttgttcc tgtcctacct ctaagagcac cacggccatg accactacta cagctccctg
     3901 ggcctccaag cactcgagct ataccagctt cattggtcat ttgacgtttt cctaaagaag
     3961 aagcaaattt tctgatggcc atctatggtc ctgatcatgc atttgatagt tttttgggtt
     4021 tgtttgtttg tttgtttttg tttctgattt ctgatgttaa ttttatcatc tgttaaattc
     4081 ttagggatac gtgagctttg ttttcctctt tagggctttt cttgcaaaac agtgtcatta
     4141 acaatggcct aagaagatgc ttccttctgc atggagaaca attgaggctc agtcatgttg
     4201 ctctgtgaca gtattttcta aaatacccac taaaaccatt gtaggtaaat tatacctttc
     4261 caggcagagg atgtagtttg gttagtagaa tgcttgccta gcacacaata aactgggttt
     4321 gatctgcatt ggccatgtgg cagcaggcct atcaccatag cactctagtg gtagacacaa
     4381 acagcaagtg tgaagccacc cttgggttta tgaatccctg tctccaaaag aaagttgctt
     4441 ttaatcattt gggcttggat ctaagtgagt catggtggct gtcaactgta atctcagcac
     4501 tagggaaggt aacgaggtgg gggatggggg cggggaggat tgttcataat tcacggctaa
     4561 gcctgggata cataatgagt tctaggccag cctgagctat aatgtgctat tctcataaag
     4621 agagaaactg gctgatttta atgtaaatac agctttgtga tggcttcaaa atatcactac
     4681 actcagaggt ctacaaggct actttagaaa atataacact ttaaagtttt atgtgtagga
     4741 gtgttttgcc tgtatgtatg ttaaatgtac catgtgtgta cctggtgcct gcagaggcta
     4801 gaagagggag gtacacctgg aactgaagtt atagatgttt gttagctact gtttgagtgc
     4861 taggaaccaa gcccagattc taagggtctt aaaggttctc cttgctgtct tgatttggtg
     4921 gtgtgctgag aacatcggtg tggaaatagc atcattctgc tgttggagtg atcctctcca
     4981 ctatccacat acttattgtt gaaattcttc tcaggacagg gttgctctgt gacttgaata
     5041 caaaagtata tagcttgccg ggccttgtgg cgcacgcctt taatcccagc actcaagagg
     5101 cagaggcagg tggatttctg agttcgagcc cagcctggtc tacagagtga gttccaggac
     5161 agccagggct acacagagaa accctgtctc gaaaaaagaa aaagtatata gcttgatata
     5221 ctcggtttct gactggcatt cagacaaagg tggtagaaaa tctgatccaa ttgtggtgtt
     5281 ctgtctcctg ggaatcagta ttgtgtatac cactttcaac tggaaataaa aattgggtcc
     5341 aagtcctttt attgctgata
//
