LOCUS       NM_026015                799 bp    mRNA    linear   ROD 02-MAY-2024
DEFINITION  Mus musculus zinc finger, matrin type 5 (Zmat5), transcript variant
            1, mRNA.
ACCESSION   NM_026015
VERSION     NM_026015.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 799)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 799)
  AUTHORS   Wiese,C.B., Ireland,S., Fleming,N.L., Yu,J., Valerius,M.T.,
            Georgas,K., Chiu,H.S., Brennan,J., Armstrong,J., Little,M.H.,
            McMahon,A.P. and Southard-Smith,E.M.
  TITLE     A genome-wide screen to identify transcription factors expressed in
            pelvic Ganglia of the lower urinary tract
  JOURNAL   Front Neurosci 6, 130 (2012)
   PUBMED   22988430
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 799)
  AUTHORS   Guo,G., Huss,M., Tong,G.Q., Wang,C., Li Sun,L., Clarke,N.D. and
            Robson,P.
  TITLE     Resolution of cell fate decisions revealed by single-cell gene
            expression analysis from zygote to blastocyst
  JOURNAL   Dev Cell 18 (4), 675-685 (2010)
   PUBMED   20412781
REFERENCE   4  (bases 1 to 799)
  AUTHORS   VanBuren,V., Piao,Y., Dudekula,D.B., Qian,Y., Carter,M.G.,
            Martin,P.R., Stagg,C.A., Bassey,U.C., Aiba,K., Hamatani,T.,
            Kargul,G.J., Luo,A.G., Kelso,J., Hide,W. and Ko,M.S.
  TITLE     Assembly, verification, and initial annotation of the NIA mouse
            7.4K cDNA clone set
  JOURNAL   Genome Res 12 (12), 1999-2003 (2002)
   PUBMED   12466305
REFERENCE   5  (bases 1 to 799)
  AUTHORS   Brady,K.P., Rowe,L.B., Her,H., Stevens,T.J., Eppig,J.,
            Sussman,D.J., Sikela,J. and Beier,D.R.
  TITLE     Genetic mapping of 262 loci derived from expressed sequences in a
            murine interspecific cross using single-strand conformational
            polymorphism analysis
  JOURNAL   Genome Res 7 (11), 1085-1093 (1997)
   PUBMED   9371744
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL606521.24.
            
            On Dec 30, 2021 this sequence version replaced NM_026015.3.
            
            Transcript Variant: This variant (1) represents the longest
            transcript and encodes the longer isoform (1). Variants 1 and 2
            encode the same isoform (1).
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC031796.1, AK012098.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-51                AL606521.24        122435-122485
            52-205              AL606521.24        140122-140275
            206-268             AL606521.24        146349-146411
            269-349             AL606521.24        147951-148031
            350-461             AL606521.24        149831-149942
            462-799             AL606521.24        155096-155433
FEATURES             Location/Qualifiers
     source          1..799
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="11"
                     /map="11 2.96 cM"
     gene            1..799
                     /gene="Zmat5"
                     /gene_synonym="2610510L01Rik; D11Bwg0572e; D11Bwg1548e"
                     /note="zinc finger, matrin type 5"
                     /db_xref="GeneID:67178"
                     /db_xref="MGI:MGI:1914428"
     exon            1..51
                     /gene="Zmat5"
                     /gene_synonym="2610510L01Rik; D11Bwg0572e; D11Bwg1548e"
                     /inference="alignment:Splign:2.1.0"
     exon            52..205
                     /gene="Zmat5"
                     /gene_synonym="2610510L01Rik; D11Bwg0572e; D11Bwg1548e"
                     /inference="alignment:Splign:2.1.0"
     CDS             79..591
                     /gene="Zmat5"
                     /gene_synonym="2610510L01Rik; D11Bwg0572e; D11Bwg1548e"
                     /note="isoform 1 is encoded by transcript variant 1; zinc
                     finger matrin-type protein 5; U11/U12 snRNP 20 kDa
                     protein; U11/U12 small nuclear ribonucleoprotein 20 kDa
                     protein"
                     /codon_start=1
                     /product="zinc finger matrin-type protein 5 isoform 1"
                     /protein_id="NP_080291.1"
                     /db_xref="CCDS:CCDS24389.1"
                     /db_xref="GeneID:67178"
                     /db_xref="MGI:MGI:1914428"
                     /translation="MGKRYFCDYCDRSFQDNLHNRKKHLNGLQHLKAKKVWYDMFRDA
                     AAILLDEQNKRPCRKFLLTGQCDFGSNCRFSHMSEQDLQELSVQVEEERRAREWPLET
                     AELPEGHLEDWLEKRAKRLSSAPSSRAEPIRTTVFQYPVGWPPMQELPPSLRAPPPGG
                     WSVLSKVQWG"
     exon            206..268
                     /gene="Zmat5"
                     /gene_synonym="2610510L01Rik; D11Bwg0572e; D11Bwg1548e"
                     /inference="alignment:Splign:2.1.0"
     exon            269..349
                     /gene="Zmat5"
                     /gene_synonym="2610510L01Rik; D11Bwg0572e; D11Bwg1548e"
                     /inference="alignment:Splign:2.1.0"
     exon            350..461
                     /gene="Zmat5"
                     /gene_synonym="2610510L01Rik; D11Bwg0572e; D11Bwg1548e"
                     /inference="alignment:Splign:2.1.0"
     exon            462..799
                     /gene="Zmat5"
                     /gene_synonym="2610510L01Rik; D11Bwg0572e; D11Bwg1548e"
                     /inference="alignment:Splign:2.1.0"
     regulatory      641..646
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Zmat5"
                     /gene_synonym="2610510L01Rik; D11Bwg0572e; D11Bwg1548e"
                     /note="hexamer: AGTAAA"
     polyA_site      663
                     /gene="Zmat5"
                     /gene_synonym="2610510L01Rik; D11Bwg0572e; D11Bwg1548e"
     regulatory      779..784
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Zmat5"
                     /gene_synonym="2610510L01Rik; D11Bwg0572e; D11Bwg1548e"
                     /note="hexamer: TATAAA"
     polyA_site      799
                     /gene="Zmat5"
                     /gene_synonym="2610510L01Rik; D11Bwg0572e; D11Bwg1548e"
                     /note="major polyA site"
ORIGIN      
        1 agagcgcaac gcgaggactc aagaggagga gcccggaacc aggtatcttt ggggccccag
       61 cgtatagtgg atgtggccat ggggaagcgg tacttctgtg actactgtga ccgctccttc
      121 caggacaacc tccacaaccg aaagaagcac ctgaatggac tgcagcacct caaggccaag
      181 aaggtgtggt acgacatgtt ccgagatgca gctgccatct tgctggatga acagaacaag
      241 cggccctgca ggaaattcct gctgacaggc cagtgcgact ttggctccaa ctgcaggttt
      301 tcccacatgt cagaacaaga tctgcaggag ctgagcgtcc aggtggaaga ggagaggcgg
      361 gccagagaat ggcccctaga gaccgccgag cttcctgagg gccacctgga ggactggctg
      421 gagaagagag ctaagaggct aagctcagcc ccaagtagca gggctgaacc catcagaacc
      481 actgtcttcc agtatccagt gggctggccg ccaatgcagg agctgccccc ctccctgcgg
      541 gcacccccac ctggagggtg gtccgtactg tccaaagtcc agtggggctg agctcttcct
      601 cacctccccc tgcctgactt caacctgtct catcagtcac agtaaagaca attgcctaac
      661 cgaggaagca gagctgcctt ccctcccttc tccctggggc ctctgagcct ggccgcccat
      721 ccacccacca tccctcaggg cgtttctcaa gaagatgggt gagaaacatc cgaatgttta
      781 taaaaaagtc tgtccttga
//
