LOCUS       NM_177086               4206 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus zinc finger, matrin type 4 (Zmat4), transcript variant
            1, mRNA.
ACCESSION   NM_177086
VERSION     NM_177086.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 4206)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 4206)
  AUTHORS   Thompson,C.L., Ng,L., Menon,V., Martinez,S., Lee,C.K.,
            Glattfelder,K., Sunkin,S.M., Henry,A., Lau,C., Dang,C.,
            Garcia-Lopez,R., Martinez-Ferre,A., Pombero,A., Rubenstein,J.L.R.,
            Wakeman,W.B., Hohmann,J., Dee,N., Sodt,A.J., Young,R., Smith,K.,
            Nguyen,T.N., Kidney,J., Kuan,L., Jeromin,A., Kaykas,A., Miller,J.,
            Page,D., Orta,G., Bernard,A., Riley,Z., Smith,S., Wohnoutka,P.,
            Hawrylycz,M.J., Puelles,L. and Jones,A.R.
  TITLE     A high-resolution spatiotemporal atlas of gene expression of the
            developing mouse brain
  JOURNAL   Neuron 83 (2), 309-323 (2014)
   PUBMED   24952961
REFERENCE   3  (bases 1 to 4206)
  AUTHORS   Basta,J.M., Robbins,L., Kiefer,S.M., Dorsett,D. and Rauchman,M.
  TITLE     Sall1 balances self-renewal and differentiation of renal progenitor
            cells
  JOURNAL   Development 141 (5), 1047-1058 (2014)
   PUBMED   24550112
REFERENCE   4  (bases 1 to 4206)
  AUTHORS   Schilling,K. and Oberdick,J.
  TITLE     The treasury of the commons: making use of public gene expression
            resources to better characterize the molecular diversity of
            inhibitory interneurons in the cerebellar cortex
  JOURNAL   Cerebellum 8 (4), 477-489 (2009)
   PUBMED   19554387
REFERENCE   5  (bases 1 to 4206)
  AUTHORS   Blackshaw,S., Harpavat,S., Trimarchi,J., Cai,L., Huang,H.,
            Kuo,W.P., Weber,G., Lee,K., Fraioli,R.E., Cho,S.H., Yung,R.,
            Asch,E., Ohno-Machado,L., Wong,W.H. and Cepko,C.L.
  TITLE     Genomic analysis of mouse retinal development
  JOURNAL   PLoS Biol 2 (9), E247 (2004)
   PUBMED   15226823
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK140413.1, AK036254.1 and BQ174274.1.
            
            On Mar 23, 2013 this sequence version replaced NM_177086.3.
            
            Transcript Variant: This variant (1) encodes the longer isoform
            (1).
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK036254.1, AK134793.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849384, SAMN01164131
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-2                 AK140413.1         2-3
            3-4175              AK036254.1         2-4174
            4176-4206           BQ174274.1         1-31                c
FEATURES             Location/Qualifiers
     source          1..4206
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="8"
                     /map="8 11.5 cM"
     gene            1..4206
                     /gene="Zmat4"
                     /gene_synonym="9630048M01Rik"
                     /note="zinc finger, matrin type 4"
                     /db_xref="GeneID:320158"
                     /db_xref="MGI:MGI:2443497"
     exon            1..141
                     /gene="Zmat4"
                     /gene_synonym="9630048M01Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            142..247
                     /gene="Zmat4"
                     /gene_synonym="9630048M01Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            248..337
                     /gene="Zmat4"
                     /gene_synonym="9630048M01Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            338..494
                     /gene="Zmat4"
                     /gene_synonym="9630048M01Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            495..722
                     /gene="Zmat4"
                     /gene_synonym="9630048M01Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            723..819
                     /gene="Zmat4"
                     /gene_synonym="9630048M01Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            820..4191
                     /gene="Zmat4"
                     /gene_synonym="9630048M01Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      4152..4157
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Zmat4"
                     /gene_synonym="9630048M01Rik"
                     /note="hexamer: AATAAA"
     regulatory      4167..4172
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Zmat4"
                     /gene_synonym="9630048M01Rik"
                     /note="hexamer: ATTAAA"
     polyA_site      4179
                     /gene="Zmat4"
                     /gene_synonym="9630048M01Rik"
                     /note="major polyA site"
     polyA_site      4191
                     /gene="Zmat4"
                     /gene_synonym="9630048M01Rik"
                     /note="major polyA site"
ORIGIN      
        1 acagttggtc cgagctgctg aaaggtctgg tcgcagagac aggaacgcag catcctcagc
       61 gtgctccatc ccggcagtgt cttcctgcgc tccgccgggc ggcgagcctc cggacgacag
      121 cccctctgct tctcggagaa gcctgatgaa gtcctccgat atcgatcagg atttatttac
      181 agatagctac tgcaaggtgt gcagcgcaca gctgatatcc gagtcccagc gggtggccca
      241 ttatgagagt cgaaaacatg ccagcaaagt ccggctgtat tacatgcttc accccaggga
      301 tggtgggtgt cctgccaaga ggctccgagc agaaaatgga agcgatgctg acatggtgga
      361 taagaataaa tgctgtacac tctgtaacat gtcctttacc tcagctgtgg tggccgactc
      421 acattaccaa ggcaaaatcc acgccaaaag gttaaaactg ttgctaggag agaaacctcc
      481 actgaaaacc acagccgctc cgctgagctc acttaaggct cctcgagtgg atacggcccc
      541 cgtggtcgca tctccctatc aaagaagaga ctcagacagg tactgcggtc tctgcgcagc
      601 ctggtttaac aatcctctga tggcccagca gcattacgaa ggcaagaaac acaaaaagaa
      661 cgcagcccgc gttgccttgc tagagcagct cggaacatct ctggatctgg gagaactgag
      721 aggtctgaga cgtacttaca gatgtaccac gtgcagtgtg tcgctcaact ccatagaaca
      781 gtatcatgca catctgcaag gatcaaaaca tcagaccaac ctgaagaata agtagtgaca
      841 gcatctatca agagctaaga agagactccc gcatttctct gtggtagaga actgctcacc
      901 aaccaaagga ggatcctttc tcaagcaatg aacatttctt acaaggattc acagattaac
      961 acgtgaccag tattgatttt tgaaagtaaa taagatttcc ttttcttctt ctcatttagt
     1021 ggcaaattat ccttggattt agaagaatcc ttttctgata acattgttta gcacaagttc
     1081 taaactgcaa tcacacacac agcagctagt cagagcatta ttcaaactta caatgagtgg
     1141 aaaatttaat ttccaattca ttctagattt ccgtagagtt acaatgattc tgtgagaccc
     1201 ttcatgatta tcatgtaagc ctcctagatc cattaacaaa tatacttttg tcatcatggg
     1261 gaacatagtt ggtgacgcca accacaagaa cagagcaaat tgtggtctgt agaagttata
     1321 taacaaatag aataccagtc cttcctgctt cacacctatg agccagcctt gcctctaaat
     1381 gccaggagcg tgaaagcagg tgggaacaca gaggaaggac cttcactctg gatcaccttg
     1441 atggaaagct tcacaagacg aagccaagtt ctccttgcaa gctgccagat catagcttag
     1501 gaaaagaact agttttgatt gcatgatgat cctattaagt aaaaatgtct tcacagcggt
     1561 tgaccttgat ggagtgcttt tgtaaaggta tccaaaggag aattttaaac cccagagtga
     1621 gatggaagta attcttagca agttggcctg gattgtgggc tttaatttgg ggcagtaatg
     1681 atttggtgtg tgtcaaggga gggaagagaa tgattaaatc ctgaagaagt ttccttcttc
     1741 tgtttctctt ccaacttgtt gccgagctgg ggattgagtg actttgaaca gaactcttct
     1801 gggaagagga tggaccagag aactgatgct ctttaaaggg atcaagtttg agtgcaactg
     1861 tgaaattccc tctccaggga atcactgctc tgcattgtgt tgggaagtgg tgtcttgcag
     1921 acactgcaag gtagacacag aacttccttt cctgggctct cagctggctg gagcagccct
     1981 tgacaacttg tgaccaccaa gctaccaagt aacgtcagac ttttccagac atcagcgctt
     2041 tccacagaga tctgaggtcg tggacagcca gtgagcaata aacgaaacga cacggaaacg
     2101 cacagtgttg ttcttaaggt gcctgttttg ttgtgtgagg aggtcacggt ccttagggac
     2161 cagacccgtg gctgcaaaga ggaaggtcac acacaccgtg tacagtcatg ctgcaggtgg
     2221 gaagcacgag gggtgtggtg acaacaattt tattttgcta ttttagaaag aagcacacaa
     2281 cagagctaca gccctcccgt gatggctttt cttcgaatat gtggaataaa gctttatttg
     2341 tcaattctgc tgtaaaataa gcatagtctg aggttttggt ttttgttttt aaaatctttc
     2401 tctgtttctg tttagtgcct gagctctctc cctgaagtgt tgtgtttatt tttgttttta
     2461 atggcctaag atagaaaagc ctatgaacat agatctcctt tgcattacag tgacactttg
     2521 ccaagtcctt tatggctaag cctccagcta caataatcag attatttcag agtgcctcat
     2581 cgaaatacca ttgctctttg gcaagctgcc acagacacct accagacatt ttcttggttt
     2641 gattgttctc aagtatattc atgcccatgc agataagggg agtgtcatcc cagcacgctg
     2701 tgaggatcac ttggccagac tactatctgc aagaaggctc aacatgccac tgtgttctgg
     2761 agactatcta acagacacac ctttcctcca gaaactgggc tgttcacttt tgctttagtg
     2821 tggctgtatg ttcaatgaag tcttatgtta gtttccagtt ttattatgac tggacaggag
     2881 ttgggtgtag ggcaaatgtt tttcaggggc ccttgattct gatgggaaga aaagagacaa
     2941 acctgtctgt gtctctgtct cctgaccagt ccatgtggag caaccctgag agagagagag
     3001 caatgtgatt acaataagaa cttggggtta gttctatatc atttgaggag aacatggaga
     3061 aaactcatct atgagagagg agagctgtcc atacgactgt gtctaaatta acgtggatat
     3121 ttcagagttc agagtgatgt cagctaacca cattaagttt tctggccata atgagaaaaa
     3181 ctcaacacct atcggcctcc tgttaaatcg agatatctct gtttaatgga acagtcacta
     3241 gcggttgacc taggtatctc cctgtttctc tcccttctcc tatcattcca ggatatagtc
     3301 tccaggatgt aacatgcatt gcccatgtgg tctaccactg aatgccatgc ttaggtgtga
     3361 ttcctcagaa cactagatca ccccttagtc ctggccatac catttgaatt tgctttacaa
     3421 aatcttcttc ccgttcagta cggatatgag cttgaggcta gcaacctgtg tcagtggcca
     3481 caaatgccat gatagtaaga tccaaattaa tgagctctcc ttatagacag tctccatagt
     3541 ccagggaact aataaataca ctcataaagc aatccgctaa gcagcaagtg ctgtggccat
     3601 tccttctgct gataaagtag ccataaaact ttcatctatt gctgctggac tgaaagacca
     3661 atgggatctg ttctttttgg ccctttagat gacagagatg cataaattgg aactgcaagg
     3721 atctttgcac tgtctgttgg agtaaattta attaggccaa ctgtatcaaa aagaaaaaaa
     3781 caaaaacaaa aaacaatggg acccacttat aatgctgtca ttcctgcgga actccccatc
     3841 tagagaggcc accttcctgt caaagctgag tgaggcattt ttgacaaggc agtgggaata
     3901 caggacatta aaccccaata agagaccacg aggttgtaaa gacagtcccc actaaatatc
     3961 tgtccttctc ttgaacagct tgtccagtga attatttttc ttttgtaaga ataaaactaa
     4021 gaaaagtctg tctgtgcaac atattattgt agggatggat ttttctcccc tgcccccttc
     4081 tggttttgaa tttgttcata ttcaaggcat gttaaactac ctcataggtt tgttgtgtgg
     4141 attagctgat taataaataa caactgatta aaatacgaat ctgtatgtaa aaaaaaaaaa
     4201 aaaaaa
//
