LOCUS       NM_025594               2257 bp    mRNA    linear   ROD 02-JUN-2024
DEFINITION  Mus musculus zinc finger, matrin type 2 (Zmat2), mRNA.
ACCESSION   NM_025594
VERSION     NM_025594.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2257)
  AUTHORS   Rotwein,P. and Baral,K.
  TITLE     Zmat2 in mammals: conservation and diversification among genes and
            Pseudogenes
  JOURNAL   BMC Genomics 21 (1), 113 (2020)
   PUBMED   32005145
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2257)
  AUTHORS   Wiese,C.B., Ireland,S., Fleming,N.L., Yu,J., Valerius,M.T.,
            Georgas,K., Chiu,H.S., Brennan,J., Armstrong,J., Little,M.H.,
            McMahon,A.P. and Southard-Smith,E.M.
  TITLE     A genome-wide screen to identify transcription factors expressed in
            pelvic Ganglia of the lower urinary tract
  JOURNAL   Front Neurosci 6, 130 (2012)
   PUBMED   22988430
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 2257)
  AUTHORS   Guo,G., Huss,M., Tong,G.Q., Wang,C., Li Sun,L., Clarke,N.D. and
            Robson,P.
  TITLE     Resolution of cell fate decisions revealed by single-cell gene
            expression analysis from zygote to blastocyst
  JOURNAL   Dev Cell 18 (4), 675-685 (2010)
   PUBMED   20412781
REFERENCE   4  (bases 1 to 2257)
  AUTHORS   Yoshikawa,T., Piao,Y., Zhong,J., Matoba,R., Carter,M.G., Wang,Y.,
            Goldberg,I. and Ko,M.S.
  TITLE     High-throughput screen for genes predominantly expressed in the ICM
            of mouse blastocysts by whole mount in situ hybridization
  JOURNAL   Gene Expr Patterns 6 (2), 213-224 (2006)
   PUBMED   16325481
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AC027740.11.
            
            On Nov 17, 2006 this sequence version replaced NM_025594.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC024881.1, AK012091.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849380, SAMN00849381
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-37                AC027740.11        250470-250506
            38-131              AC027740.11        250844-250937
            132-255             AC027740.11        251588-251711
            256-329             AC027740.11        252584-252657
            330-475             AC027740.11        253046-253191
            476-2257            AC027740.11        254426-256207
FEATURES             Location/Qualifiers
     source          1..2257
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="18"
                     /map="18 19.46 cM"
     gene            1..2257
                     /gene="Zmat2"
                     /gene_synonym="2610510D14Rik; 2900082I05Rik"
                     /note="zinc finger, matrin type 2"
                     /db_xref="GeneID:66492"
                     /db_xref="MGI:MGI:1913742"
     exon            1..37
                     /gene="Zmat2"
                     /gene_synonym="2610510D14Rik; 2900082I05Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             20..619
                     /gene="Zmat2"
                     /gene_synonym="2610510D14Rik; 2900082I05Rik"
                     /codon_start=1
                     /product="zinc finger matrin-type protein 2"
                     /protein_id="NP_079870.1"
                     /db_xref="CCDS:CCDS37773.1"
                     /db_xref="GeneID:66492"
                     /db_xref="MGI:MGI:1913742"
                     /translation="MASGSGTKNLDFRRKWDKDEYEKLAEKRLTEEREKKDGKPVQPV
                     KRELLRHRDYKVDLESKLGKTIVITKTTPQSEMGGYYCNVCDCVVKDSINFLDHINGK
                     KHQRNLGMSMRVERSTLDQVKKRFEVNKKKMEEKQKDYDFEERMKELREEEEKAKAYK
                     KEKQKEKKRRAEEDLTFEEDDEMAAVMGFSGFGSTKKSY"
     exon            38..131
                     /gene="Zmat2"
                     /gene_synonym="2610510D14Rik; 2900082I05Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            132..255
                     /gene="Zmat2"
                     /gene_synonym="2610510D14Rik; 2900082I05Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            256..329
                     /gene="Zmat2"
                     /gene_synonym="2610510D14Rik; 2900082I05Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            330..475
                     /gene="Zmat2"
                     /gene_synonym="2610510D14Rik; 2900082I05Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            476..2257
                     /gene="Zmat2"
                     /gene_synonym="2610510D14Rik; 2900082I05Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      855..860
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Zmat2"
                     /gene_synonym="2610510D14Rik; 2900082I05Rik"
                     /note="hexamer: AATAAA"
     polyA_site      879
                     /gene="Zmat2"
                     /gene_synonym="2610510D14Rik; 2900082I05Rik"
     regulatory      1240..1245
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Zmat2"
                     /gene_synonym="2610510D14Rik; 2900082I05Rik"
                     /note="hexamer: ATTAAA"
     polyA_site      1272
                     /gene="Zmat2"
                     /gene_synonym="2610510D14Rik; 2900082I05Rik"
                     /note="major polyA site"
     regulatory      2237..2242
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Zmat2"
                     /gene_synonym="2610510D14Rik; 2900082I05Rik"
                     /note="hexamer: AATAAA"
     polyA_site      2257
                     /gene="Zmat2"
                     /gene_synonym="2610510D14Rik; 2900082I05Rik"
ORIGIN      
        1 cattcacttc gctgtgaaga tggcgtctgg cagcgggaca aaaaacttgg actttcgccg
       61 aaagtgggac aaagatgaat atgagaagct cgcggagaag agactcacag aggagagaga
      121 gaagaaggat gggaaaccag tgcagcctgt caagcgggag cttctgcggc acagggatta
      181 caaggtggac ctggagtcca agctggggaa gacgattgtt atcaccaaga cgaccccaca
      241 gtctgaaatg ggaggctact actgcaatgt ctgtgactgt gtggtgaaag actccattaa
      301 cttcctggac cacattaatg gaaagaaaca tcagcgaaac ctgggtatgt ccatgcgcgt
      361 ggaacgctcc actctggatc aggtaaagaa gcgttttgag gtgaacaaga agaagatgga
      421 agagaagcag aaagattatg attttgagga aaggatgaag gagctcagag aagaggagga
      481 aaaggctaaa gcatacaaaa aagagaaaca gaaggagaag aaaaggagag ccgaggagga
      541 cttgactttt gaggaggatg atgaaatggc agctgtgatg ggtttctctg gctttggttc
      601 caccaagaag agttactgaa gcgttctctt tggcctaact ttggcctata ctggacctaa
      661 tgagtgtgtg ttgaggtggg gtgggggcgt catttctttt ttgggtactg gagaaggttc
      721 ttaagagtgt taatgggcag ggctcgaggg tgggtgtttg tggtttccct ctacgttggg
      781 ggaggtactg tggtttattc cttcagcctc agtacattac tggagtcaca gaacctctgc
      841 ccatctgtgt tcccaataaa gaaggacctc cctctttgag actgctttcc ccatatcccc
      901 ctgcatcttt ccctcttcat ctatcaaacc tgttgtctga acatcctccc ttttcctgtg
      961 tcctgctatt gttttaattt ttactcttgt tcagcttgca acagaagggt tctgagtctc
     1021 cagtctgcgg gtactggtat acccttgacc cagctcttcc tcccattcca ccccgcggtt
     1081 ctctacccac ttgtgcatgc atgtgatttc tgcctgggtc aatgtgtgtg tgggtatgtg
     1141 tgcatgatat gtcacaaaga ggggacctga gctagaatct cagagcattg atgccctgag
     1201 acctaatgtt cttggtttcc tcagtgcatg taacaggata ttaaatggga tgagtgtctg
     1261 gtgagttttt aacctcgttt cttctgtttc acttcactga ggatctctgt tttgtcttcc
     1321 tcgggaacag gttcttggaa gaacctgttt tatgcaaaaa agcaacaaaa cagccctaaa
     1381 accaaacaaa agctctcact ctgggagacc ccggttctca gacactgttc aacatgtgca
     1441 gtaaatgaca gtgacaaggc ctgtttcaca ttgtttggtg acaagtctgt atcattccct
     1501 gccccacatg ttcttacatc aagaatatct tcctcttccc acccccttac atacaggttt
     1561 ccttagtgcg agttttcccc tctgctaata ggatctgtgc ccttgggagt ccaaacaaaa
     1621 cattttagtc ccctgtaatt ttagtaccct ctgatcttcc tagaagagct cagggttaaa
     1681 cttgcctgtc tgcagttggg cgggcactgg gttattcagg cttggcactg ttgatgatga
     1741 gctaggtaag ttttggaatt ggggtttttg tgacagggtc ccacttgact ggtcttgaac
     1801 tcagatatct gcctgcctca gcttctccag tgctgagatt aaatgtgtgt gcctccattt
     1861 caggacaggt cttttttttt tttttttttt ttttttttta aggggctcta tagtatgttg
     1921 agcagcgtcg tcacctagta gatgtcagca gtagcagtcc catccagttt gtgacagcta
     1981 caaatatctt tgtcccctgg gagtaggtaa atggctctcc cattgaaaat gactaaaact
     2041 cttatccact gtagtgtaac ttgtgaactc tatgacagag attagttaaa aacaaatccc
     2101 tcccaaacat tgagagctag atcacgtact gtgccttgtc taaggaattc aagggcgaga
     2161 tggggatgag ggcacaggtg acagttatac aagtcttgta aacagatgaa gctccctttg
     2221 ctggctctac actctcaata aaggggtcca ctcacaa
//
