LOCUS       NM_175446               3520 bp    mRNA    linear   ROD 30-JUL-2024
DEFINITION  Mus musculus zinc finger, matrin type 1 (Zmat1), mRNA.
ACCESSION   NM_175446
VERSION     NM_175446.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3520)
  AUTHORS   Zhou,J., McCarrey,J.R. and Wang,P.J.
  TITLE     A 1.1-Mb segmental deletion on the X chromosome causes meiotic
            failure in male mice
  JOURNAL   Biol Reprod 88 (6), 159 (2013)
   PUBMED   23677977
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3520)
  AUTHORS   Yokoyama,S., Ito,Y., Ueno-Kudoh,H., Shimizu,H., Uchibe,K.,
            Albini,S., Mitsuoka,K., Miyaki,S., Kiso,M., Nagai,A., Hikata,T.,
            Osada,T., Fukuda,N., Yamashita,S., Harada,D., Mezzano,V., Kasai,M.,
            Puri,P.L., Hayashizaki,Y., Okado,H., Hashimoto,M. and Asahara,H.
  TITLE     A systems approach reveals that the myogenesis genome network is
            regulated by the transcriptional repressor RP58
  JOURNAL   Dev Cell 17 (6), 836-848 (2009)
   PUBMED   20059953
REFERENCE   3  (bases 1 to 3520)
  AUTHORS   Piao,Y., Ko,N.T., Lim,M.K. and Ko,M.S.
  TITLE     Construction of long-transcript enriched cDNA libraries from
            submicrogram amounts of total RNAs by a universal PCR amplification
            method
  JOURNAL   Genome Res 11 (9), 1553-1558 (2001)
   PUBMED   11544199
REFERENCE   4  (bases 1 to 3520)
  AUTHORS   Eickhoff,H., Schuchhardt,J., Ivanov,I., Meier-Ewert,S., O'Brien,J.,
            Malik,A., Tandon,N., Wolski,E.W., Rohlfs,E., Nyarsik,L.,
            Reinhardt,R., Nietfeld,W. and Lehrach,H.
  TITLE     Tissue gene expression analysis using arrayed normalized cDNA
            libraries
  JOURNAL   Genome Res 10 (8), 1230-1240 (2000)
   PUBMED   10958641
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AW044958.1, BC067022.1 and AL361464.1.
            
            On Aug 5, 2006 this sequence version replaced NM_175446.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR13948564.5406802.1,
                                           SRR17784646.1104008.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849374,
                                           SAMN00849375 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-24                AW044958.1         3-26
            25-1916             BC067022.1         1-1892
            1917-2992           BC067022.1         2005-3080
            2993-3157           AL361464.1         236-400
            3158-3520           BC067022.1         3246-3608
FEATURES             Location/Qualifiers
     source          1..3520
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="X"
                     /map="X 56.35 cM"
     gene            1..3520
                     /gene="Zmat1"
                     /gene_synonym="A230096A06; B930008K04Rik"
                     /note="zinc finger, matrin type 1"
                     /db_xref="GeneID:215693"
                     /db_xref="MGI:MGI:2442284"
     exon            1..299
                     /gene="Zmat1"
                     /gene_synonym="A230096A06; B930008K04Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             236..2179
                     /gene="Zmat1"
                     /gene_synonym="A230096A06; B930008K04Rik"
                     /codon_start=1
                     /product="zinc finger matrin-type protein 1"
                     /protein_id="NP_780655.2"
                     /db_xref="CCDS:CCDS41126.1"
                     /db_xref="GeneID:215693"
                     /db_xref="MGI:MGI:2442284"
                     /translation="MAAAGRGDSSFKVDTCPCLREDPTCDGQEQPAYFTDNFCKPCGV
                     VLQHESERISHFESEIHAQNVKFFFQMHGEQSEVPGRKVNMHAGNSQVCSSGEVNRNN
                     FTDLHNMSFDSLAAAPSHYVGKSHSPTQNQSLEEHDQVSPSTCSPKMDEPNTTPAPPP
                     FLKSVIVKPPPAYRMRTYVCHICSITFTSLHMFRSHMQGTEHQIKESHVINQVKNSKK
                     MQESCQAECGDDIKMKKSRELEPKGHFREMEDNYMEAQAHEYREMVDSRPRHKMLEQT
                     LPLENFWAHPGPYNDSRALEEQLPHNLPAESKTYDSFQDELEDYIKGQKARGLDPNTS
                     FRRMSESYRYRDQRYRERVDSEHRQRPCEERFSFEAPQTYQQEYSASPVEGQSPHWLP
                     SHSKRRNDDFQNEFDDYNKVQESRESEPKTSFRRMDSSFETHNYEEMVDRRSSHTMFE
                     EGLPCETFQTYTDPYSSAQAVENTLPHCLPAYENQPSLDAESHYQLTTEEFSEMPASL
                     SLSQQEDNPSSYNVDYDIYKHLPSNDNASAHETSHRRRRQKRKRHLEEGKERPEKEQS
                     KHKRKRSYQDKDLDKDKLIKQSKREEDKAGVSSEKTKHRRKKRKHETSSEKEERKHKK
                     EKKKSVEERTEEEILWDESILGF"
     exon            300..406
                     /gene="Zmat1"
                     /gene_synonym="A230096A06; B930008K04Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            407..508
                     /gene="Zmat1"
                     /gene_synonym="A230096A06; B930008K04Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            509..683
                     /gene="Zmat1"
                     /gene_synonym="A230096A06; B930008K04Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            684..749
                     /gene="Zmat1"
                     /gene_synonym="A230096A06; B930008K04Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            750..849
                     /gene="Zmat1"
                     /gene_synonym="A230096A06; B930008K04Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            850..3504
                     /gene="Zmat1"
                     /gene_synonym="A230096A06; B930008K04Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      3482..3487
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Zmat1"
                     /gene_synonym="A230096A06; B930008K04Rik"
                     /note="hexamer: ATTAAA"
     polyA_site      3504
                     /gene="Zmat1"
                     /gene_synonym="A230096A06; B930008K04Rik"
                     /note="major polyA site"
ORIGIN      
        1 attgtgcgcg ccaggctgcg acggcggcgg cggcggtggc gtcgccgaaa gctgtagctc
       61 agctggcgag gtcttcccac cctcgggaag ttccctaagc tgtcgcctcc gccgccgcct
      121 acgcggcggc agcggcggcg gccttgctgg tgcctccctc ctctgccacc tccacccctg
      181 cctgctcact tgccggtgct gtggagaagg cggcggcggc tttggcggct ccactatggc
      241 ggcggcgggg aggggggaca gtagttttaa agtagacacc tgcccttgcc tcagagaaga
      301 tcccacgtgt gatggacaag aacaacctgc gtattttaca gataattttt gtaaaccatg
      361 tggagtggtt ctacagcatg aatcagaaag gatttcacat tttgagagtg aaatacatgc
      421 tcaaaatgtt aagttctttt ttcaaatgca tggagaacaa agcgaagtgc ctggtaggaa
      481 agtgaacatg catgctggaa attctcaggt gtgctcgagt ggagaagtca acagaaacaa
      541 ctttactgat ctgcacaaca tgagttttga ctccctagct gctgctccat ctcactatgt
      601 gggaaagagc cattctccga ctcagaacca gtcactggaa gaacatgatc aagtatctcc
      661 atccacatgc tcaccaaaga tggatgaacc caatactact cctgcacctc cacccttcct
      721 gaagtctgtt attgtgaagc ctcctccagc atatagaatg agaacctacg tatgccatat
      781 ctgcagtatc acctttacat ctttacatat gttccggtcc cacatgcaag gaactgaaca
      841 tcaaattaaa gaatctcatg ttatcaatca agtgaagaat tcaaagaaaa tgcaagagtc
      901 ttgtcaagct gagtgtggag atgacatcaa aatgaagaaa tctagagaac tagagcccaa
      961 gggtcatttc agggaaatgg aggataatta catggaagcc caagcccatg aatacagaga
     1021 aatggttgat tctagaccca gacataaaat gcttgaacaa acacttccac ttgaaaattt
     1081 ctgggcacac ccaggaccat acaatgattc tagagcacta gaagagcagt tacctcacaa
     1141 tttaccagca gagtcaaaga catatgactc tttccaagat gaacttgaag attacatcaa
     1201 agggcagaag gccagaggac ttgatcccaa tactagtttt agacggatgt cagaaagcta
     1261 taggtatagg gatcagagat acagagaaag ggttgattct gaacacagac agaggccttg
     1321 tgaggaaaga ttttcatttg aggctccaca gacctaccag caagaataca gtgcctcccc
     1381 agtggagggc caatctcctc actggttacc atctcattca aagaggagaa atgatgattt
     1441 ccaaaatgaa tttgatgatt acaacaaggt gcaggaatct agagaatccg agccaaagac
     1501 ttcttttaga agaatggata gctcttttga aacccataat tacgaagaaa tggttgacag
     1561 aagatccagt catacaatgt ttgaggaagg actcccatgt gagactttcc agacttacac
     1621 agatccatac agcagtgcac aagcagtaga aaacacgtta cctcattgct taccagctta
     1681 tgaaaaccaa ccgagcctag atgctgaaag ccactatcag cttaccacag aggagttctc
     1741 agaaatgcct gcttctctga gcctcagtca acaagaagat aaccctagct catacaatgt
     1801 agactatgac atttacaagc atctgccctc aaatgacaat gccagtgccc atgaaacaag
     1861 tcatagaagg cgacgtcaga agagaaaacg acacctggag gaaggaaaag aaagaccaga
     1921 gaaggaacag tccaaacata aaagaaaaag aagctatcag gataaagatt tagacaaaga
     1981 caagctcatc aagcaaagta agagagagga agataaagct ggagtcagct ctgaaaaaac
     2041 caagcatcga agaaagaaaa gaaaacatga aacatcctca gagaaagaag aacgtaagca
     2101 caaaaaagag aaaaagaaat ctgttgaaga gagaacagaa gaggaaatcc tttgggatga
     2161 gtcaattctt gggttctgac cctatggtat accaagaagg gctaaaagaa aatgatactg
     2221 atttagatac acacaggaat aagaggagaa accaagaaaa gtacagaatc agcacagaaa
     2281 acctttgggg ttttttgctt gtttgtttgt ttgtttgttt gtttgcaaaa attgaaattg
     2341 aacatgagaa acaatatata aaacatctaa atccagcatt caaggaactg ttttgaggtt
     2401 aacctactca aaaaatttga ccttttagtt ttacttacag aagagtgaat aagaaaacca
     2461 gtgggggaaa atctgatgga atcagtggag aagttttaga taaaattgag cacttcagaa
     2521 gaagagaagg taaagtcagt gtccattaaa gaaaacagtc tctctctctg cgcaagtgtg
     2581 tatgtatata cgtgtgcttg tatatgtgta tgtatatata tgtgtgaccg tgtgtatgtg
     2641 tcttctgctc tgctctgctc tcctctcacc tacttccctg cacccctctt tttctgtcac
     2701 ctccctcctt tcaaaatgta attgaaagta gaaccacaaa gtctaaatct acccttcaaa
     2761 aagcaaggac acaataccaa gaagcatgag tggagaagaa acctgctaaa gagatagcag
     2821 aagattcagt gttttcaact ttgcagtttt gttaccttac ggttgaagaa aggttaaaaa
     2881 ctttggtttc ctgaaatttg tgttctttgt gtatttgtac atgtgtacag ttaatctcta
     2941 acaaaagcca gaagaagtaa cattattcgt tatgcttttt aaagtcactt tctttgactt
     3001 tccaagagag aaaacttact ctattgctta tgtataatat ggttttctta aagtagaggt
     3061 gtttctactt tgtccatcaa gttgtaatga aaataagttg tttgctcatg gaaataatgt
     3121 acttaaaatg gtgaattaca aagcagtcta cagccatacc accctgaatt ttcccagtct
     3181 tgtttgaatt tggaagaatg gtcaggcctg tggaagaccg gacttcacag aatcctttta
     3241 agaatttgtg ttagtactgg tggtatttta ctactgtcat gtggtaacgt ttctgttttc
     3301 tccaatgaaa atgtatgaaa caatgtagac tttttctgtt aaatctaatt tgcagtgtat
     3361 ttttgtattt tctagttctg aaagtggaaa attagtgtat aataaattag atgatatata
     3421 cttttaaaat gttctccaaa agggctgata gaaatcggtc tatattctga aaaatgttta
     3481 tattaaagtg ttttaatttc taaaaaaaaa aaaaaaaaaa
//
