LOCUS       NM_001081329            5645 bp    mRNA    linear   ROD 06-AUG-2023
DEFINITION  Mus musculus zinc finger with KRAB and SCAN domains 2 (Zkscan2),
            mRNA.
ACCESSION   NM_001081329 XM_894621
VERSION     NM_001081329.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 5645)
  AUTHORS   Farini D, Cesari E, Weatheritt RJ, La Sala G, Naro C, Pagliarini V,
            Bonvissuto D, Medici V, Guerra M, Di Pietro C, Rizzo FR, Musella A,
            Carola V, Centonze D, Blencowe BJ, Marazziti D and Sette C.
  TITLE     A Dynamic Splicing Program Ensures Proper Synaptic Connections in
            the Developing Cerebellum
  JOURNAL   Cell Rep 31 (9), 107703 (2020)
   PUBMED   32492419
REFERENCE   2  (bases 1 to 5645)
  AUTHORS   Fedotova AA, Bonchuk AN, Mogila VA and Georgiev PG.
  TITLE     C2H2 Zinc Finger Proteins: The Largest but Poorly Explored Family
            of Higher Eukaryotic Transcription Factors
  JOURNAL   Acta Naturae 9 (2), 47-58 (2017)
   PUBMED   28740726
REFERENCE   3  (bases 1 to 5645)
  AUTHORS   Thomas JH and Emerson RO.
  TITLE     Evolution of C2H2-zinc finger genes revisited
  JOURNAL   BMC Evol Biol 9, 51 (2009)
   PUBMED   19261184
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK080486.1, AC117184.3 and AK034954.1.
            
            [WARNING] On Jul 30, 2024 this sequence was replaced by
            NM_001081329.3.
            
            On Feb 15, 2018 this sequence version replaced NM_001081329.1.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK034954.1, SRR9219381.294921.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164131, SAMN01164138
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-177               AK080486.1         2-178
            178-850             AC117184.3         70279-70951         c
            851-3418            AK034954.1         676-3243
            3419-5645           AC117184.3         48249-50475         c
FEATURES             Location/Qualifiers
     source          1..5645
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="7"
                     /map="7 67.42 cM"
     gene            1..5645
                     /gene="Zkscan2"
                     /gene_synonym="9430065N20Rik; Zfp694"
                     /note="zinc finger with KRAB and SCAN domains 2"
                     /db_xref="GeneID:210162"
                     /db_xref="MGI:MGI:2444060"
     exon            1..1058
                     /gene="Zkscan2"
                     /gene_synonym="9430065N20Rik; Zfp694"
                     /inference="alignment:Splign:2.1.0"
     CDS             660..3542
                     /gene="Zkscan2"
                     /gene_synonym="9430065N20Rik; Zfp694"
                     /note="zinc finger protein 694"
                     /codon_start=1
                     /product="zinc finger protein with KRAB and SCAN domains
                     2"
                     /protein_id="NP_001074798.1"
                     /db_xref="CCDS:CCDS40119.1"
                     /db_xref="GeneID:210162"
                     /db_xref="MGI:MGI:2444060"
                     /translation="MATVMNPQIDVEVEECLIMKVEKDSEWVSEPILERSGSTECESF
                     RKCFRQFCYEDVTGPHEAFSKLWELCCRWLKPEMRSKEQILEQLVIEQFLTILPEKIQ
                     TWAQKQCPESGEEAVALVVHLEKETRRLRKQVSSPLPSEKQAPPRTVWEVADFEPEQL
                     ETQHRVVSLEEAGSLHSGHQEQLNQKREHRPLPKNAHSSVWVPVPSDEWNALDEEVTT
                     QEPIRDVHTERSFSYKKSVQQVPAHRGLYHEIRKESAGSMVSLGDSVSAPNKIAQLEQ
                     KKEPWSVGLHSSNKRNSVLQSNYIKEKSVHAVQIPARNAGKVWREQQQWGLEDEKIAG
                     VHWSYEETKTFLAILKESRFYETLQACPRNSQVYGAVAEWLRECGFLRTPEQCRTKFK
                     SLQKSYRKVRNGHMLEPCAFFEDMDALLNPAAHTSSTERPKVVISLPLKRTAISAKEQ
                     VSLVEEEEGAEDSDGDEVGIEFIRKSEIRAAPVLFQNLSGVHWGYEETKTFLDILQET
                     RFYEALQACHRKSKLYGVVAEQLRECGFLRTPEQCRTKFKSLQKSYRKVKNGHVLESC
                     AFYKEMDALVNCRPSSLSTNTSEEVPSLSRQERGHIEVEPREPTTWEPVETPQEAVLE
                     DSGSERLSEEEMIEEPELEGPSGLLQSPAGFEIGTIIKEDPTQVMFKDTEPHRVLMEK
                     PKRLVSQNTNPSKYCKREYFSGRHCENLQGVRQGKLMSQPRDTGKAVVHQRPCVGRRP
                     YRLLKYGENFGRSARLVCRMTHQKENPFKCGVCGKCFGRSRSLIRHQRIHTGEKPFKC
                     PDCGKSFNDSSNFGAHQRVHTGEKPYRCRECGKCFSQSSSLIIHQRTHTGEKPYQCEE
                     CGKSFTNSSHFSAHRRIHTEENPYKCGDCEKSFNNCARFREHQRIHNGEKPYTCAQCG
                     KHFNKSSFLTKHREVHMREKLLPYSPSVYSPENLLKGKSAELRKTF"
     exon            1059..1245
                     /gene="Zkscan2"
                     /gene_synonym="9430065N20Rik; Zfp694"
                     /inference="alignment:Splign:2.1.0"
     exon            1246..1316
                     /gene="Zkscan2"
                     /gene_synonym="9430065N20Rik; Zfp694"
                     /inference="alignment:Splign:2.1.0"
     exon            1317..1443
                     /gene="Zkscan2"
                     /gene_synonym="9430065N20Rik; Zfp694"
                     /inference="alignment:Splign:2.1.0"
     exon            1444..2127
                     /gene="Zkscan2"
                     /gene_synonym="9430065N20Rik; Zfp694"
                     /inference="alignment:Splign:2.1.0"
     exon            2128..2619
                     /gene="Zkscan2"
                     /gene_synonym="9430065N20Rik; Zfp694"
                     /inference="alignment:Splign:2.1.0"
     exon            2620..5645
                     /gene="Zkscan2"
                     /gene_synonym="9430065N20Rik; Zfp694"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cgcgaggaag cctcgcacgg accccggtcg cgagcggcgc atgcgtggcc gcggctccca
       61 gcgccccccg cgctctgcgc tggcggagct gacagggcag cgcgccagcc gttcgccgcc
      121 ccccgcgagg cctagcctca tcccgcagct tcttcccctc tggccgaggt tctcggcatc
      181 ctcgtgcgga ggaaccccga gcgctgcagg cgccgctgcg agtccggaca ttcctgcgct
      241 cgcgcccctg gtgggcacct gcagcggcct ggacctggac caggacccca gggctggccg
      301 cgcctcgcgg acacaccccc tcccgatcgg cgcctccgcc cagcatcagt cccctgggtc
      361 cccttccagc ctagcttcta acctaaggtc tttccgacct tgcaccttaa agaacctcat
      421 gggagggggc gcatcttgat tggataagag gccgggtttg cagactttgg ggtgggtgca
      481 cattcaccct ttcaagagcc ttgtacaaat ttgattaatc agcctggagt tccttgtccc
      541 agctaactgc tgtcttttat gtctctacgg tcccatattt ccaagggcat taagtggagg
      601 gcactcggaa gcttctctgg gccctgactt ggagctagac ctgttggccc cattggatca
      661 tggctactgt catgaaccct cagatcgacg tggaagttga ggagtgcctc ataatgaaag
      721 tggaaaagga ctccgagtgg gtatcggagc ccattctgga aagatcaggc agcactgaat
      781 gtgagtcctt ccgtaaatgc ttcaggcagt tctgttatga ggatgtgaca ggaccccatg
      841 aagctttcag taaactctgg gaactctgct gtcggtggct gaagccagaa atgcgttcca
      901 aggaacagat cctcgagcag ctggtaatcg aacagtttct caccattctg cctgagaaga
      961 ttcagacctg ggcgcagaag caatgtccag aaagcggaga ggaggcggtg gccctagtag
     1021 tgcatttgga gaaagagacc agaagacttc gaaagcaggt cagtagccct ctgccttcag
     1081 agaagcaagc cccacctaga actgtgtggg aagtagctga ctttgagcca gagcaactgg
     1141 agacccagca cagggttgtt tctctggagg aagctggaag cctccactca ggacaccaag
     1201 aacagctgaa ccaaaaaagg gaacataggc cattacctaa gaatgctcac tcttctgtct
     1261 gggttcctgt ccctagtgat gagtggaatg ctctcgatga ggaagtgaca acccaggaac
     1321 caataagaga tgtccacaca gagagaagct tttcctacaa aaaaagtgta cagcaagttc
     1381 cggcgcacag aggtctctac cacgaaatca ggaaggaaag tgcagggagc atggtttccc
     1441 tgggagactc tgtgtctgca cctaacaaaa tagcccagtt ggaacaaaaa aaggaaccat
     1501 ggagcgtagg tcttcattcc tcaaacaaga ggaatagtgt cctgcaaagc aactacatca
     1561 aagagaagtc ggtccatgct gttcagatcc cagctaggaa tgcagggaaa gtgtggcgag
     1621 agcagcaaca gtggggtttg gaagatgaaa agattgcagg tgtgcactgg agctatgaag
     1681 aaaccaagac ttttcttgca attctcaagg aatctcgctt ttatgaaaca ctccaggctt
     1741 gtccccgaaa tagccaggta tatggtgctg tggctgaatg gttgcgagaa tgtggcttcc
     1801 tccgaacacc agagcagtgc cggaccaagt tcaaaagtct tcagaagagt tatcgaaaag
     1861 tgagaaatgg ccacatgcta gaaccctgtg ccttctttga ggacatggat gccttgttaa
     1921 accctgcagc ccacacttca tctactgaga ggccaaaggt tgtgatctct ctcccactaa
     1981 agagaactgc tattagtgct aaagagcagg tcagtttggt ggaggaggag gaaggtgctg
     2041 aagactccga tggtgatgaa gtgggcattg agtttatacg caagtctgaa atccgtgctg
     2101 cccctgtctt atttcaaaac ctaagtggtg tgcattgggg ctatgaagaa accaagactt
     2161 ttcttgatat ccttcaagag acccgatttt atgaagcact tcaagcctgc catcggaaga
     2221 gcaaattgta tggagtcgtg gctgaacaac ttcgagaatg tggctttctc cggacaccag
     2281 agcaatgccg aaccaagttc aaaagccttc agaagagtta ccgaaaagtg aagaatggcc
     2341 atgtactgga gtcctgtgca ttttacaagg agatggatgc cctggttaac tgccgtccat
     2401 cctccctttc caccaacacc tcagaagaag tcccatccct ctcaaggcag gaaaggggac
     2461 atattgaggt tgaaccccga gagcctacaa cctgggaacc tgtggagacc ccacaggaag
     2521 cagtgttaga agattctggc agtgagagac tgagtgagga ggaaatgata gaagagccag
     2581 aacttgaagg accttcaggc ctgctgcaaa gcccagctgg ttttgaaatt ggaactatta
     2641 ttaaggaaga cccaacacag gtaatgttta aggacacaga gccccatagg gtattaatgg
     2701 aaaaacctaa aagacttgtt tcccagaata ctaaccccag taaatactgt aaaagggagt
     2761 acttctcagg aagacactgt gaaaaccttc aaggagttag acagggaaag ctgatgtctc
     2821 aacctagaga tacagggaag gctgtggtgc atcagaggcc ttgtgtgggg aggagaccat
     2881 atagacttct caaatatggg gaaaactttg gaaggagtgc ccgtcttgtg tgcaggatga
     2941 cccaccagaa ggagaatcct tttaagtgtg gtgtctgtgg gaagtgcttt ggtaggagca
     3001 ggagccttat cagacaccaa agaatccaca ctggggaaaa gcctttcaaa tgtcctgact
     3061 gtgggaaaag ctttaatgac tcctcaaatt ttggagccca ccagagagtc catactggag
     3121 agaagccgta cagatgcagg gagtgtggga aatgcttcag ccagagctca agtcttatca
     3181 tccatcagag aacccacact ggtgagaagc cctatcagtg tgaagagtgt gggaaaagct
     3241 tcaccaacag ttctcacttc agtgcccacc gcagaatcca tactgaagag aatccctaca
     3301 aatgtgggga ctgtgagaag agcttcaata actgcgcaag gttccgagaa caccagcgaa
     3361 tccacaatgg agagaagccc tacacatgtg cccagtgtgg caaacatttc aataagagct
     3421 ctttcctcac taaacaccgg gaagtccaca tgagagaaaa gctgctgcca tactccccct
     3481 ctgtgtactc cccagagaac ctactgaaag gcaagagtgc cgagctcagg aagacctttt
     3541 gacagtgagc ttgcctttcc actcaccctg ttagccatct gatcctagtt ctgctcttgg
     3601 aagcagtctt cttagctata aattacagtt cccaagacag gcctgagaat cgaagtaaac
     3661 taaacctctc atctggtctc acctcatagt ctgacatgct cagtctgcct ctctcctgtg
     3721 agtcttggaa gtttcaataa atgagataat aagatttttt aaattcaaaa taaaattctc
     3781 actagaatgt tgaggctaat gctatttccc agcaaatttc aaaacttttg cacatggatt
     3841 aatccatata ttttcaaata tatgaatggt gtaaagtttt tatggtgtta tctatcaccc
     3901 ttatgagacc ttggcagcaa cttgacaatg gattttcata tctgggtaga acttttagga
     3961 gtttgataag aactgtatca gatccatctt ggttttgagg gtacaaaagg agagtggagg
     4021 tttatagctt ccttcagaag tctgtatcaa gaagttgacc caaatagcta aggtctaatt
     4081 tcctgtgttg ttacagaaat catgttgcta atactttgtc ctccaccaag ataagcaaat
     4141 gctcaccctt tatctccctt tttgttcctc aagacttaac tccagtggct gctgcttctc
     4201 cagtgacaca tgatccttgt attatttatc acaagtctat acttacctct taattgttct
     4261 gggtgctctt gtctgactct tctgggctgc ctgacccact cagatgggag aggatgcaca
     4321 gtagtgctgt ctcattaaga gacaatcaga ttccaactct acttctaccc catcatttct
     4381 ctgactctta acttagagca agacctatgg tatgtaggta tatttcaaat tgcctagctc
     4441 tgtatttcaa tgtaatataa tagtgtttct aaaagtttaa ggctataagg aagaagataa
     4501 ggcctgtgaa gtatttaact gactctttag gcctgtttta gatggaagag ctacctcagt
     4561 ccagactaca cttccagggt tgactgctac actactagtc tctggttctg aagcttagtt
     4621 tgtgagatca taaacctgac tgtaaagtcc taaataataa caccactcta tagttcactc
     4681 agtgaaagtg aaattactta caaacttcca ctctaccacc ttattttccc cgttgtccta
     4741 ttctgggaag aaaaaaaaaa actttaacca agtataatct gtcagaaagt ttctggtgga
     4801 gaaataatta acttgtatag aattacagat gaaattcaga agtttgatct tcccaaaaca
     4861 gttacttgaa gtagaggcct gtggtgttca tacctttagt acataggtag ccccgtgtag
     4921 ctttgctttg gggagggaga agtcccaata gggaaggaga gccatagtcg ggtgtttcta
     4981 ggttctcctg tcagatgctc tcatttgaaa acatctagag atgatatttt ttatgtgaat
     5041 atatttgaat cttttgagac ctattcagca aagtatcaaa gagggtagac attgtataaa
     5101 gaaaagtgct ttatggtgcc aacataggat agcctgttgg aaggcaagtg actcaggtaa
     5161 atgctgataa ctgtttgtga tgtgtgtttg ttggaaatgt tatcattgtt gacaactata
     5221 acagtagcta atttcctgtg tattgtctga aatagagact cctaatggta catgcagcgt
     5281 catgttggta ttgtgcctag agcagtaaga ttgtgtgatg ccagtggact tgtgcttata
     5341 attacgtaga tgctctggaa ttccagctct agaaaagatg cacattagtc taaattgcca
     5401 cttagtaaca tgtacacagg attgatactt atatggaagc atgattcaga actgttatgt
     5461 ataaggccat ggtttgtttg ggttttttct taattttatt taatcttttt tttacactcg
     5521 aaattttatc cccttcctgg tccacccact gactgttcca catcccatac ctcctcaccc
     5581 cacccccatc tccacaagga tgtccccacc ccactcctac ccccaacccc accagacctc
     5641 cccac
//
