LOCUS       NM_001048148            2065 bp    mRNA    linear   ROD 10-FEB-2025
DEFINITION  Mus musculus zinc finger, CCCH-type with G patch domain (Zgpat),
            transcript variant 2, mRNA.
ACCESSION   NM_001048148
VERSION     NM_001048148.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2065)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 2065)
  AUTHORS   Dickinson,M.E., Flenniken,A.M., Ji,X., Teboul,L., Wong,M.D.,
            White,J.K., Meehan,T.F., Weninger,W.J., Westerberg,H., Adissu,H.,
            Baker,C.N., Bower,L., Brown,J.M., Caddle,L.B., Chiani,F., Clary,D.,
            Cleak,J., Daly,M.J., Denegre,J.M., Doe,B., Dolan,M.E., Edie,S.M.,
            Fuchs,H., Gailus-Durner,V., Galli,A., Gambadoro,A., Gallegos,J.,
            Guo,S., Horner,N.R., Hsu,C.W., Johnson,S.J., Kalaga,S., Keith,L.C.,
            Lanoue,L., Lawson,T.N., Lek,M., Mark,M., Marschall,S., Mason,J.,
            McElwee,M.L., Newbigging,S., Nutter,L.M., Peterson,K.A.,
            Ramirez-Solis,R., Rowland,D.J., Ryder,E., Samocha,K.E.,
            Seavitt,J.R., Selloum,M., Szoke-Kovacs,Z., Tamura,M., Trainor,A.G.,
            Tudose,I., Wakana,S., Warren,J., Wendling,O., West,D.B., Wong,L.,
            Yoshiki,A., MacArthur,D.G., Tocchini-Valentini,G.P., Gao,X.,
            Flicek,P., Bradley,A., Skarnes,W.C., Justice,M.J., Parkinson,H.E.,
            Moore,M., Wells,S., Braun,R.E., Svenson,K.L., de Angelis,M.H.,
            Herault,Y., Mohun,T., Mallon,A.M., Henkelman,R.M., Brown,S.D.,
            Adams,D.J., Lloyd,K.C., McKerlie,C., Beaudet,A.L., Bucan,M. and
            Murray,S.A.
  CONSRTM   International Mouse Phenotyping Consortium; Jackson Laboratory;
            Infrastructure Nationale PHENOMIN, Institut Clinique de la Souris
            (ICS); Charles River Laboratories; MRC Harwell; Toronto Centre for
            Phenogenomics; Wellcome Trust Sanger Institute; RIKEN BioResource
            Center
  TITLE     High-throughput discovery of novel developmental phenotypes
  JOURNAL   Nature 537 (7621), 508-514 (2016)
   PUBMED   27626380
  REMARK    Erratum:[Nature. 2017 Nov 16;551(7680):398. doi:
            10.1038/nature24643.. PMID: 29144450]
REFERENCE   3  (bases 1 to 2065)
  AUTHORS   Guo,G., Huss,M., Tong,G.Q., Wang,C., Li Sun,L., Clarke,N.D. and
            Robson,P.
  TITLE     Resolution of cell fate decisions revealed by single-cell gene
            expression analysis from zygote to blastocyst
  JOURNAL   Dev Cell 18 (4), 675-685 (2010)
   PUBMED   20412781
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK159801.1, AK041491.1 and BY467113.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK049764.1, AK159801.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-222               AK159801.1         20-241
            223-2054            AK041491.1         451-2282
            2055-2065           BY467113.1         501-511
FEATURES             Location/Qualifiers
     source          1..2065
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="2"
                     /map="2 103.63 cM"
     gene            1..2065
                     /gene="Zgpat"
                     /gene_synonym="1500006I01Rik"
                     /note="zinc finger, CCCH-type with G patch domain"
                     /db_xref="GeneID:229007"
                     /db_xref="MGI:MGI:2449939"
     exon            1..830
                     /gene="Zgpat"
                     /gene_synonym="1500006I01Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             250..1785
                     /gene="Zgpat"
                     /gene_synonym="1500006I01Rik"
                     /codon_start=1
                     /product="zinc finger CCCH-type with G patch
                     domain-containing protein"
                     /protein_id="NP_001041613.1"
                     /db_xref="CCDS:CCDS17210.1"
                     /db_xref="GeneID:229007"
                     /db_xref="MGI:MGI:2449939"
                     /translation="MDEDNLETALQTYRAQLQQVELALGAGLDASEQADLRQLQGDLK
                     ELIELTEASLLSVRKSKLLSTVDQESPAQEDAEYLAFQKAIAEEVEAPGAPCNDSETA
                     PGSEVQPGSTSSALEEEEEDPDLEELSGAKVNAPYYSAWGTLEYHNAMVVGAEEAEDG
                     SACVRVLYLYPTHKSLKPCPFFLEGKCRFKENCRFSHGQVVSVDELRPFQDPDLSLLQ
                     TGSACLAKHQDGLWHPARITDVDNGYYTVKFDSLLLKEAVVEGDSILPPLRTEATESS
                     DSDTGDASDSSYARVVEPSTVDTGTCSSAFAGWEVHTRGIGSKLLVKMGYEFGKGLGR
                     HAEGRVEPIHAVVLPRGKSLDQCAEILQKKTKRGQAGSNRPPKCRRSGSRPEGRPPPR
                     NVFDFLNEKLQSQVPGTPDAGVDTPERRNKDMYHASKSAKQALSLQLFQTEEKIERTQ
                     RDIRGIQEALTRNTGRHNMTTAHLQEKLEGAQRQLGQLRAQEADLQRKQRKADTHRKM
                     TEF"
     exon            831..964
                     /gene="Zgpat"
                     /gene_synonym="1500006I01Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            965..1120
                     /gene="Zgpat"
                     /gene_synonym="1500006I01Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1121..1240
                     /gene="Zgpat"
                     /gene_synonym="1500006I01Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1241..1646
                     /gene="Zgpat"
                     /gene_synonym="1500006I01Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1647..2065
                     /gene="Zgpat"
                     /gene_synonym="1500006I01Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2038..2043
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Zgpat"
                     /gene_synonym="1500006I01Rik"
                     /note="hexamer: ATTAAA"
     polyA_site      2058
                     /gene="Zgpat"
                     /gene_synonym="1500006I01Rik"
                     /note="major polyA site"
ORIGIN      
        1 gcagaaggct agcgcgtgag cttggctggc gagggcggaa gcccttctag cctgcgagcg
       61 ccggccggag gtggggttgc gggccgcaga ggacggggcg ggtgacgtgc aggtccccct
      121 cggcggaacc gcggccctcc tcaggctccc tagcggtttt gggggcggcg ttgccctgag
      181 ttgttcttac tgctcttcct cctgtttttg tctgcggtaa aggttccgaa tcctgcctgc
      241 tgggtcggga tggacgagga caacctagag actgccctgc agacctaccg ggcccagctg
      301 cagcaggtag agctggcgct cggtgctggc ctagacgctt ctgagcaggc ggacctgcgt
      361 cagctgcagg gcgatctaaa ggagctgatt gagctcaccg aggccagcct gttgtcggtc
      421 agaaagagca agctgctgtc tacagtggac caggagagcc cagctcaaga ggatgctgag
      481 tacctggctt tccagaaggc cattgcggag gaagtggaag cgcccggcgc cccctgcaat
      541 gactcggaga cggcccctgg gagcgaggtg cagccgggat ccacctcctc tgcactggag
      601 gaggaggagg aggacccaga tctggaggaa ctgagcggtg ctaaagtgaa tgccccctac
      661 tacagcgctt ggggcacgct ggagtatcac aacgctatgg tagtgggcgc cgaagaggcg
      721 gaggatggtt ctgcgtgcgt ccgagtcctc tacctatacc ctacccacaa gtccctgaag
      781 ccctgtccgt tcttcctgga gggaaagtgc cggttcaagg agaactgcag gttctcccat
      841 gggcaggtgg tatctgtgga tgagctgcgt ccctttcagg atccagactt aagcttactg
      901 cagactggct ctgcatgtct ggccaagcac caggatggcc tgtggcaccc agcacggatc
      961 actgatgtgg acaatggcta ctataccgtt aagtttgact cattgctgct gaaggaggct
     1021 gtagtggagg gggacagcat cctgcctcct ctgcgcactg aggctacaga gtcatctgac
     1081 tcagacactg gtgatgcaag tgactccagc tatgccagag tggtggaacc aagcacggtg
     1141 gacactggga cctgcagttc tgcctttgct ggctgggagg tacacacacg gggcattggc
     1201 tccaaactcc tcgtcaagat gggctatgag tttggcaagg gtttgggccg gcatgcagaa
     1261 ggccgggtgg agcccatcca tgctgtagtg ttgcctagag ggaaatcact ggaccagtgt
     1321 gcagagatac tgcagaagaa gacaaagcga ggccaggctg ggtccaacag gcctccaaaa
     1381 tgccggagga gtggtagtag acctgagggc cgcccacccc cccggaatgt gtttgacttt
     1441 ttgaatgaaa aactgcaaag ccaggttcct gggaccccag atgctggggt ggatacccca
     1501 gagagaagga acaaagacat gtatcacgcc agcaagagcg ccaagcaggc tttgagcctg
     1561 cagctcttcc agactgagga gaagattgag cggacccaac gggacatccg gggcatccag
     1621 gaggccctaa cccggaacac tggccggcac aatatgacga cagcccatct gcaggagaag
     1681 ctggagggag cccagcggca gctgggtcag ctgcgtgctc aggaggctga cctacagagg
     1741 aaacagcgga aggcagacac tcacaggaag atgacagagt tctagcggcc ctgcctgtat
     1801 tgtggataga gccctgggac ccagctccaa actgccttgg cagaaagaca gctgtcaccc
     1861 tgatgcctaa acagcacctg gaagaggaac cagccccttc ttaggatgcc ccttaattag
     1921 ccttgtcagc ctagagtgtg aacactgctg agtagaggtg ggacatcagg gctgattttg
     1981 aacacttatc tgcccaccaa gcccacctac cagtgtcttg gggtgtctcc ttaggacatt
     2041 aaagtgattt catcacaatt ctctc
//
