LOCUS       NM_001276321            1854 bp    mRNA    linear   ROD 02-MAY-2024
DEFINITION  Mus musculus zinc finger TRAF type containing 1 (Zftraf1),
            transcript variant 1, mRNA.
ACCESSION   NM_001276321
VERSION     NM_001276321.2
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1854)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 1854)
  AUTHORS   Okazaki,N., Kikuno,R., Ohara,R., Inamoto,S., Koseki,H., Hiraoka,S.,
            Saga,Y., Nagase,T., Ohara,O. and Koga,H.
  TITLE     Prediction of the coding sequences of mouse homologues of KIAA
            gene: III. the complete nucleotide sequences of 500 mouse
            KIAA-homologous cDNAs identified by screening of terminal sequences
            of cDNA clones randomly sampled from size-fractionated libraries
  JOURNAL   DNA Res 10 (4), 167-180 (2003)
   PUBMED   14621295
REFERENCE   3  (bases 1 to 1854)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
REFERENCE   4  (bases 1 to 1854)
  AUTHORS   Menon,R.P., Strom,M. and Hughes,R.C.
  TITLE     Interaction of a novel cysteine and histidine-rich cytoplasmic
            protein with galectin-3 in a carbohydrate-independent manner
  JOURNAL   FEBS Lett 470 (3), 227-231 (2000)
   PUBMED   10745073
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC156550.5.
            
            On Jun 9, 2022 this sequence version replaced NM_001276321.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC082772.1, AK080867.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164131 [ECO:0000348]
            ##Evidence-Data-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-561               AC156550.5         33460-34020         c
            562-800             AC156550.5         26041-26279         c
            801-1012            AC156550.5         25199-25410         c
            1013-1854           AC156550.5         24027-24868         c
FEATURES             Location/Qualifiers
     source          1..1854
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="15"
                     /map="15 36.2 cM"
     gene            1..1854
                     /gene="Zftraf1"
                     /gene_synonym="1110031M01Rik; Chrp; Cyhr1"
                     /note="zinc finger TRAF type containing 1"
                     /db_xref="GeneID:54151"
                     /db_xref="MGI:MGI:1859320"
     exon            1..561
                     /gene="Zftraf1"
                     /gene_synonym="1110031M01Rik; Chrp; Cyhr1"
                     /inference="alignment:Splign:2.1.0"
     CDS             205..1443
                     /gene="Zftraf1"
                     /gene_synonym="1110031M01Rik; Chrp; Cyhr1"
                     /note="isoform 1 is encoded by transcript variant 1;
                     cysteine and histidine-rich cytoplasmic protein; cysteine
                     and histidine-rich protein 1; Zinc finger
                     TRAF-type-containing protein 1; cysteine and histidine
                     rich 1"
                     /codon_start=1
                     /product="zinc finger TRAF-type-containing protein 1
                     isoform 1"
                     /protein_id="NP_001263250.1"
                     /db_xref="CCDS:CCDS70643.1"
                     /db_xref="GeneID:54151"
                     /db_xref="MGI:MGI:1859320"
                     /translation="MSGAEEAGGGGPAAGPAGAVPAGVGVGAGPGAAAGPAAAALGEA
                     AGPGIPDEAALAGARQLQEAAGDPDAPPKKRLRAAEAAEAAAAAVAAGSGKLEERLYS
                     VLCCTVCLDLPKASVYQCTNGHLMCAGCFIHLLADARLKEEQATCPNCRCEISKSLCC
                     RNLAVEKAVSELPSECGFCLRQFPRSLLERHQKEECQDRVTQCKYKRIGCPWHGPFHE
                     LTVHEAACAHPTKTGNELMEILDEMDQSHRKEMQLYNSIFSLLSFEKIGYTVWVFGPY
                     LWSTEQEEHSIKSDPVYRCSLKATEPPEAGKKLFGDRVPEQAEGLSSNCRTGNGCPQM
                     SKLDQARPTGSHGSRASVTSSEHVGSKSQATPWAREHEAPADTGATQGNSIPSTAQPA
                     AGGQLRAPRAGLDSQSCHAA"
     exon            562..800
                     /gene="Zftraf1"
                     /gene_synonym="1110031M01Rik; Chrp; Cyhr1"
                     /inference="alignment:Splign:2.1.0"
     exon            801..1012
                     /gene="Zftraf1"
                     /gene_synonym="1110031M01Rik; Chrp; Cyhr1"
                     /inference="alignment:Splign:2.1.0"
     exon            1013..1854
                     /gene="Zftraf1"
                     /gene_synonym="1110031M01Rik; Chrp; Cyhr1"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1826..1831
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Zftraf1"
                     /gene_synonym="1110031M01Rik; Chrp; Cyhr1"
                     /note="hexamer: AATAAA"
     polyA_site      1854
                     /gene="Zftraf1"
                     /gene_synonym="1110031M01Rik; Chrp; Cyhr1"
                     /note="major polyA site"
ORIGIN      
        1 agcgaaaaca aagatggcgg ccgcgccggg gttggtggcc ggggcggctg cgggccgacg
       61 ggcgggccag gcccactgag gcagctgcac ggtgggcagg ctgcggggtc gccgcggcag
      121 tgagaagccg gcaagggcgc gcggcgaccc taacttccag ccggcgagcg cgccggcacc
      181 cgcccgccgg gccggccggc cgtgatgtcc ggcgccgagg aggccggcgg gggtggcccg
      241 gctgcagggc ccgcgggtgc cgtgccggcc ggggtcgggg taggggccgg gcctggggct
      301 gccgcggggc cggctgcggc ggctctgggc gaggcggcgg ggcccgggat cccggacgag
      361 gcggccctgg ccggcgctcg gcagctgcaa gaggcggccg gcgaccccga cgcgccgccc
      421 aagaagcggc tgcgggcggc cgaggcagcc gaggcggcgg cggcggcagt ggcagcgggc
      481 agtggaaagc tggaggagcg tctctactcg gtgctgtgct gcaccgtgtg cctggacctg
      541 cccaaggctt ccgtgtacca gtgtactaac ggtcacttga tgtgcgctgg ctgttttatc
      601 cacctactag cagatgcccg gctgaaggag gagcaggcca catgtcccaa ctgtcgttgt
      661 gagatcagta agagcctctg ctgccggaac ctggctgtgg agaaagctgt gagcgagctg
      721 ccttcagagt gtggcttctg tctgcgtcag ttccctcgct ccctcctaga gaggcaccag
      781 aaagaggaat gccaggacag ggtgacacag tgcaagtaca agcgtattgg ctgcccgtgg
      841 catggccctt tccatgagct gacagtgcat gaagctgcgt gtgctcaccc gaccaagaca
      901 ggcaacgagc tgatggagat cctcgacgag atggaccaga gccaccgcaa ggagatgcag
      961 ctctacaaca gcatcttcag cctgctcagc tttgagaaga tcggctacac agtctgggtg
     1021 tttgggcctt acctttggag cacggagcaa gaagagcatt ccatcaagtc agatcctgtc
     1081 tacagatgtt cactgaaggc tacagagcct cccgaggctg gcaagaagct gtttggagac
     1141 agggttccag aacaagctga gggtctgagc tcaaactgta gaactgggaa tggatgccca
     1201 caaatgagta agctggacca ggccaggccc actggatctc atggctcccg ggcatctgtc
     1261 accagctctg aacatgtcgg gagcaagagc caggccacac cttgggccag agaacacgaa
     1321 gcacctgctg atactggggc cactcaggga aactccattc cctctactgc tcagcctgcg
     1381 gcaggtggcc agctcagagc gcccagggca ggcttggaca gccagtcatg ccatgctgcc
     1441 tagactagcc caaacaggcc tgagatgcaa agggcccagg ggcctgcagc agcagaaaac
     1501 tatggctctt ggttaagagt agccttggtt gagatctcac ggcctgcggg gtctgggtag
     1561 gccaggccat gtggctacag cagaggctgg gtgggaagcc ccgtccctga aagaaggact
     1621 ggctgcctaa gaacccacac atccacggca ggacatgcca gccacaggac tgcagaggca
     1681 ggtctgcctg ctaagcgaca gccctacaaa cagccgggca gaatccacat cacagtgcaa
     1741 cattgaggac ttggcactcc ccttgggcag gaccagatac catataccca cctgctggct
     1801 tttctggcag ctttgtatca gaaccaataa agtgcacttg ttctcagaac tgta
//
