LOCUS       NM_175381               5002 bp    mRNA    linear   ROD 13-FEB-2025
DEFINITION  Mus musculus zinc finger translocation associated (Zfta),
            transcript variant 1, mRNA.
ACCESSION   NM_175381
VERSION     NM_175381.7
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 5002)
  AUTHORS   Herranz-Perez,V., Nakatani,J., Ishii,M., Katada,T.,
            Garcia-Verdugo,J.M. and Ohata,S.
  TITLE     Ependymoma associated protein Zfta is expressed in immature
            ependymal cells but is not essential for ependymal development in
            mice
  JOURNAL   Sci Rep 12 (1), 1493 (2022)
   PUBMED   35087169
  REMARK    GeneRIF: Ependymoma associated protein Zfta is expressed in
            immature ependymal cells but is not essential for ependymal
            development in mice.
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5002)
  AUTHORS   Bedogni,F. and Hevner,R.F.
  TITLE     Cell-Type-Specific Gene Expression in Developing Mouse Neocortex:
            Intermediate Progenitors Implicated in Axon Development
  JOURNAL   Front Mol Neurosci 14, 686034 (2021)
   PUBMED   34321999
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 5002)
  AUTHORS   Ozawa,T., Kaneko,S., Szulzewsky,F., Qiao,Z., Takadera,M.,
            Narita,Y., Kondo,T., Holland,E.C., Hamamoto,R. and Ichimura,K.
  TITLE     C11orf95-RELA fusion drives aberrant gene expression through the
            unique epigenetic regulation for ependymoma formation
  JOURNAL   Acta Neuropathol Commun 9 (1), 36 (2021)
   PUBMED   33685520
  REMARK    GeneRIF: C11orf95-RELA fusion drives aberrant gene expression
            through the unique epigenetic regulation for ependymoma formation.
            Erratum:[Acta Neuropathol Commun. 2021 May 27;9(1):100. doi:
            10.1186/s40478-021-01157-y.. PMID: 34044883]
            Publication Status: Online-Only
REFERENCE   4  (bases 1 to 5002)
  AUTHORS   Shimogori,T., Lee,D.A., Miranda-Angulo,A., Yang,Y., Wang,H.,
            Jiang,L., Yoshida,A.C., Kataoka,A., Mashiko,H., Avetisyan,M.,
            Qi,L., Qian,J. and Blackshaw,S.
  TITLE     A genomic atlas of mouse hypothalamic development
  JOURNAL   Nat Neurosci 13 (6), 767-775 (2010)
   PUBMED   20436479
REFERENCE   5  (bases 1 to 5002)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC129188.3.
            
            On Feb 25, 2022 this sequence version replaced NM_175381.6.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR14777535.347151.1,
                                           SRR14777531.402181.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-302               AC129188.3         131104-131405
            303-797             AC129188.3         133555-134049
            798-1187            AC129188.3         134743-135132
            1188-1736           AC129188.3         135402-135950
            1737-5002           AC129188.3         136131-139396
FEATURES             Location/Qualifiers
     source          1..5002
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="19"
                     /map="19 5.32 cM"
     gene            1..5002
                     /gene="Zfta"
                     /gene_synonym="2700081O15Rik"
                     /note="zinc finger translocation associated"
                     /db_xref="GeneID:108899"
                     /db_xref="MGI:MGI:1919667"
     exon            1..302
                     /gene="Zfta"
                     /gene_synonym="2700081O15Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             164..2200
                     /gene="Zfta"
                     /gene_synonym="2700081O15Rik"
                     /note="isoform 1 is encoded by transcript variant 1;
                     uncharacterized protein C11orf95 homolog; zinc finger
                     translocation-associated protein"
                     /codon_start=1
                     /product="zinc finger translocation-associated protein
                     isoform 1"
                     /protein_id="NP_780590.3"
                     /db_xref="CCDS:CCDS29524.2"
                     /db_xref="GeneID:108899"
                     /db_xref="MGI:MGI:1919667"
                     /translation="MEPGGDHRSRSGGGRGGPGPAVTSARGRRLPPTAASGGTEPEED
                     DGGQALQLEGGALGSWGSTPLPSSRARGPASSGRKYSDHCEARASRPGKSRIPGRDHR
                     RYYHDHWRLEYLMDFIPSRHGMVCMVCGSSLATLKLSTIKRHIRQKHPYSLHWSPREK
                     EVISNSWDAHLGLGAGGEAESLGAQGAEEEEEEDEEEEEGANLQACPPKGSGKAPAGG
                     GCRRQRRGVRGGSVAPRRRRLAASRRAGGSRGLGARRLERRLKESLQNWFRAECLMDY
                     DPRGNRLVCMACGRALPSLHLDDIRAHVLEVHPSSLGLSGPQRSALLQAWGDQPEALS
                     ELTQPSPDDDLVPQDLTRKSRDSAPAAGAPSSQDLSPPDVKEEAGWVPERPGPAEEEE
                     GEGEGEREGIPNRPRRGRDHRRHYQERWRLEYLMELDGCRRGLVCMVCGGALASLKMS
                     TIKRHIRQRHPGSNSLSGPVKALIAQEWSEKAAHLLALGLPRPESPSVPVAPSTASAS
                     EEGGGAEEAEPEEEWWGDAPLSPGAPSERPAEEEDDEDDSQEPGGLAFPPLPLPPPPP
                     PPPPPPRSREQRRNYQPRWRGEYLMDYDGSRRGLVCMVCGGALATLKVSTIKRHILQV
                     HPFSMDFTPEERQTILEAYEEAALRCYGHEGFGPPAPAPRDSGADLKPGAVCRA"
     exon            303..797
                     /gene="Zfta"
                     /gene_synonym="2700081O15Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            798..1187
                     /gene="Zfta"
                     /gene_synonym="2700081O15Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1188..1736
                     /gene="Zfta"
                     /gene_synonym="2700081O15Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1737..5002
                     /gene="Zfta"
                     /gene_synonym="2700081O15Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      4612..4617
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Zfta"
                     /gene_synonym="2700081O15Rik"
                     /note="hexamer: AATAAA"
     polyA_site      4628
                     /gene="Zfta"
                     /gene_synonym="2700081O15Rik"
                     /note="major polyA site"
     regulatory      4974..4979
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Zfta"
                     /gene_synonym="2700081O15Rik"
                     /note="hexamer: AATAAA"
     polyA_site      5002
                     /gene="Zfta"
                     /gene_synonym="2700081O15Rik"
ORIGIN      
        1 agcccgcgct gccgagcgag cagtcagccg tccgtgcggc cggccgcccg tgaatgcgcc
       61 ccgcgcccgg gggccccgcg caccgagcgc cccgcgtgcg ccgccgctgg ctccgcggcc
      121 ccgcgccccg ccgccccggg gcccccgctc cgcagcgcag cgcatggagc ccggcgggga
      181 ccaccggagc cggagcggcg gcggcagggg cggccccggg cccgcagtga cctcggcacg
      241 gggccgacgg ctgccgccca ccgcagcgag cggcggcacg gagcccgagg aggacgacgg
      301 cggacaagct cttcagctgg aagggggtgc cttagggtcc tgggggagta cccccctacc
      361 ctcctccagg gccaggggac cagcatcttc aggcaggaaa tactcagatc attgtgaggc
      421 tcgggcctcg aggcctggaa agagtcgcat ccccggcagg gaccaccggc gctattacca
      481 cgaccactgg cggctggagt acctgatgga cttcatcccc tcccggcatg gcatggtgtg
      541 tatggtgtgt ggcagctccc tggccaccct caagctcagc accatcaaga ggcacattcg
      601 ccagaaacac ccctactccc tgcactggag tcccagggag aaggaagtga tcagcaacag
      661 ctgggacgcc catctggggc tgggggccgg tggtgaggct gagagcctgg gggcccaggg
      721 ggcagaggag gaggaggaag aagatgaaga ggaggaggag ggggccaacc tgcaagcttg
      781 cccacccaag ggctcaggca aagccccagc tggtgggggc tgccggcgcc agcggcgagg
      841 ggtccgaggg ggctcagtgg cacctcggcg ccggcgcctc gcagcctccc gaagggctgg
      901 gggcagcagg gggctggggg cccggcgcct ggagcggagg ctgaaggagt cactgcagaa
      961 ctggttccgg gctgagtgtc tcatggacta cgacccacgg gggaatcggc tggtgtgcat
     1021 ggcctgcggc cgggcactgc ccagcctgca cttggacgac atccgtgctc acgtgctgga
     1081 agtgcacccc agctccctag ggctcagtgg cccccagcgc agtgccctgc tgcaggcctg
     1141 gggtgaccag cctgaggctc tgtccgagct cacccagccc tcaccagacg atgacctcgt
     1201 cccccaggac ctgaccagaa agagccggga ctccgccccc gctgctggag ccccctcctc
     1261 tcaggatctc agccccccag acgtaaagga agaggctggc tgggtgcctg agaggcccgg
     1321 gccggcggag gaggaggagg gcgagggcga gggcgagagg gagggcatcc cgaaccggcc
     1381 tcggaggggc cgagaccatc gccgccacta ccaggagcgc tggcggctgg agtacctcat
     1441 ggagctggac ggctgccgac gcggcctggt gtgcatggtg tgcgggggcg cgctggcctc
     1501 gctcaagatg agcaccatca agcgacacat ccgccagcgc caccccggct ccaacagcct
     1561 cagcgggcca gtcaaagctc tcatcgccca ggagtggagc gaaaaggccg cacacctgct
     1621 ggccctgggg ctgcccaggc cggagtcgcc cagcgtccct gtcgccccca gcacagcttc
     1681 agcctctgag gaggggggag gggcagagga ggcggagcca gaggaggagt ggtggggcga
     1741 cgcgccgctg tcccctggag ctccgtcgga gagacccgcg gaggaagagg acgacgaaga
     1801 tgacagccag gagcccgggg ggctggcctt cccaccgctg ccactgccgc cacctccacc
     1861 gccacctcca cctccgccgc gcagccggga gcagcggcgc aactaccagc cgcgctggcg
     1921 gggcgaatac ttgatggact acgacggcag ccggcgcggg ctggtgtgca tggtgtgcgg
     1981 gggcgcgctg gccacgctca aggtgagcac catcaagcga cacattctgc aggtgcatcc
     2041 cttctccatg gacttcaccc cggaggagcg ccagaccatt ttagaggcct atgaggaggc
     2101 agcgctgcgt tgctacggcc acgagggctt tgggccaccc gccccggcac cacgagacag
     2161 cggcgcggat ctcaagcctg gcgcggtgtg tcgcgcgtag cagtcaccct gcgctgtcct
     2221 ggcccttggg ctgagagacc ttgatgtcag gcccggggat tccccacctc cccgctggtc
     2281 gggctaggct ggggccgggg cccgggcctg ggatggggat gggatggcgc cgctgcagtc
     2341 gtcccgtgac actttgctgt gccagctagt acttgcgcct caggcgcgca ctagcccggg
     2401 ggtccaggca ctctttgtgc ggtgctcccc gcttcccgaa aagccaaagc gcctccccag
     2461 tgttcgcagt gagcactctt ggctgtccct gagggcgcag tgctgccagg ccggggaagg
     2521 ggcgcagcca gtcagtatta gggttgaagg cagggcgcaa ggaagccagg aaggacgcgc
     2581 tggccgcgcg ccctggccag tggcccagtt ctgtgtggct tcacgccagc gggcgcggct
     2641 ctcggctccc aggctgtggg gtccaattct tggcctctcg gaggcccagg cggtgaattg
     2701 ggactgagca gggggcgggg cggggccgga acggtggggc ccagtctgct ggaccaattt
     2761 ccccggctgg cctaggacag cgagcgcacc catcctgggc cagtgccacg ccttcgggac
     2821 cgggggcata aagggattag cactttttct ttaggccctc ctgttcagag ggcttctgtt
     2881 acccacacgg tgaaggctgc gggaatactc ttggtccagt gccagtaccg ttccacctca
     2941 gggcactggg gtggtagggc tctactactg ccccctctga acgtgaattg ccctcggtgg
     3001 acacgctact ggttctcagc tccctgggct tggggccggg tctctgcctc cttttctctt
     3061 gccggaaaca gcgccaggcc ccatggtgcc aaaagggccc ctcagtctcc caggcaggtc
     3121 cgagaggggt atgtagattt cattctcccg tggagaacag gtggtccgaa gatcaggccc
     3181 ttttttgctg tttgtatttt attttgaaac tgtatttaat gctttttata tgaaggggag
     3241 aggggaactg gcccaatcac ccttacgtgc aaatgtctta tttattatgc gtgtatcaga
     3301 gataagctgt gaggtggtgg aggaagaact gagatgggag tgtggtgagg ggattgggat
     3361 atactaggta tctccatgtt cccctggcct ttttgcctcc aggtccagtg tctgctcttc
     3421 acaaagagaa gtcgctgcag gcactgtgcc ctccctttaa agtcagggtg cggtggtcag
     3481 ggcgtggggc ctgggttctg gggccagtgc agcccttgtg gtgagaaaac aagaaaagaa
     3541 atcccttctc accctccaga gccggagctc aaggttcaag tgcctcaggc ccagttccct
     3601 agatcgagat ggattttata ccacggattt tataacattt tttataattc aagattgtca
     3661 gtgggaaggg accctggagc tcacaaactg attcctttca aatctcaact cccaactccc
     3721 agttcagtga gctttgcact atattgccct gcttccaatc tggcaagtta ctaagatttc
     3781 tttacctatt aggcctgtta aagtgggtat tgggcactgc aggcccacag cacttgtgta
     3841 ctgcacttac gggaatgagg atgcaggcgg ctttcagcag tgcaggcttg ccagtcagaa
     3901 ctccaggtgg ggcccacttt ccctgccgct gaggtttccc cagcagaatt aggctgctta
     3961 tctgtgcttg ttttgaggcc atcaggtatt ctggaacagc tgctggctca gtgaaattcc
     4021 agttttgacc ggccagggtt ttggagacag tattaaatct taagaacaga gactatggat
     4081 agtgccaggc tgtgcactta cccttttgct ttccacctgc atgttttacg ctgagggtga
     4141 ttattctcgc ccacctctac ataaattgga gccacagatt gtcgtgattg ccagagctca
     4201 ctgcagaagt tcaggttagc tggggcagat ttcagcagtc ttcagggtag catcatttta
     4261 gacgcttgct agagacacat tcttgggccc tcctgatagg cctttcccat acagttgcaa
     4321 ctcccaaggt ggttgtcaag tacctctgca gtgattctgc cataatgacc tatggcctca
     4381 aggggctgct gggtctcctc cctctattct gacatgaaca ggtgaagttc cttcattgtt
     4441 ttgttaatga tatgcttgct attatgaccc atatgtaaat gttactctgg atacatattt
     4501 atatgccatg ttacttagtg acactattca aacatttgta tgtgtatttg tgaagttgtt
     4561 tgcatcagtc ataaagtacc accccacccc ccccaaccca gaggtatgtt gaataaatct
     4621 agaatccagc cttatgagtc acagccaact tagtttgggg gcagagcaag tcagaggagt
     4681 tctgatgtca gaccagacat gcatgaaacc agttcagttt cagctttcgg ctgcttcctg
     4741 tggcaagtgg ggaaccttcc ttcccatccc caggcaggtg cctttcaccc cagtcacttc
     4801 taaggtcatc ctttaccggg tctctaactt cattttggaa aacaaacgta gtgcagcttg
     4861 tgctcagtgc catgggaatc cttgcaatct tgggagttct ttctcaaaat tcctggaatg
     4921 agggtgggag tgagtgaaag cctttgctct tacttcaccc aaactgtaca aagaataaag
     4981 ttgcagactg atgagacagt ca
//
