LOCUS       XM_017316588            4717 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus zinc finger RNA binding protein (Zfr),
            transcript variant X4, mRNA.
ACCESSION   XM_017316588
VERSION     XM_017316588.1
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000081.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4717
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="15"
     gene            1..4717
                     /gene="Zfr"
                     /gene_synonym="C920030H05Rik"
                     /note="zinc finger RNA binding protein; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 6 mRNAs, 40 ESTs, 2927 long SRA reads, 6 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 6 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:22763"
                     /db_xref="MGI:MGI:1341890"
     CDS             314..3406
                     /gene="Zfr"
                     /gene_synonym="C920030H05Rik"
                     /codon_start=1
                     /product="zinc finger RNA-binding protein isoform X4"
                     /protein_id="XP_017172077.1"
                     /db_xref="GeneID:22763"
                     /db_xref="MGI:MGI:1341890"
                     /translation="MDQQPASGVAYSHPTTVASYTVHQAPVAAHTVTAAYAPAAATVA
                     VARPAPVAVAAAATAAAYGGYPTAHTATDYGYTQRQQEAPPPPPPATTQNYQDSYSYV
                     RSTAPAVAYDSKQYYQQPTATAAAVAAAAQPQPSVAETYYQTAPKAGYSQGATQYTQA
                     QQARQVTAIKPATPSPATTTFSIYPVSSTVQPVAAAATVVPSYTQSATYSTTAVTYSG
                     TSYSGYEAAVYSAASSYYQQQQQQQKQAAAAAAAAAATAAWTGTTFTKKTPFQNKQLK
                     PKQPPKPPQIHYCDVCKISCAGPQTYKEHLEGQKHKKKEAALKASQNTSSSNNSTRGT
                     QNQLRCELCDVSCTGADAYAAHIRGAKHQKVVKLHTKLGKPIPSTEPNVVSQATSSTA
                     ASASKPTASPSSIGASNCTLNTSSIATSSVKGLSTTGNSSLNSTSNTKVSAIPTNMAA
                     KKTSTPKINFVGGNKLQSTGNKTEDLKGIDCVKNTPAASAVQIPEVKQDAGSEPVTPA
                     SLAALQSDVQPVGHDYVEEVRNDEGKVIRFHCKLCECSFNDPNAKEMHLKGRRHRLQY
                     KKKVNPDLQVEVKPSIRARKIQEEKMRKQMQKEEYWRRREEEERWRMEIRRYEEDMYW
                     RRMEEEQHHWDDRRRMPDGGYPHGPPGPLGLLGVRPGMPPQPQGPAPLRRPDSSDDRY
                     VMTKHATIYPTEEELQAVQKIVSITERALKLVSDSLSEHEKSKNKEGDDKKEGGKDRA
                     LKGVLRVGVLAKGLLLRGDRNVNLVLLCSEKPSKSLLSRIAENLPKQLAVISPEKYDI
                     KCAVSEAAIILNSCVEPKMQVTITLTSPIIREENMREGDVTSGMVKDPPDVLDRQKCL
                     DALAALRHAKWFQARANGLQSCVIIIRILRDLCQRVPTWSDFPSWAMELLVEKAISSA
                     SSPQSPGDALRRVFECISSGIILKGSPGLLDPCEKDPFDTLATMTDQQREDITSSAQF
                     ALRLLAFRQIHKVLGMDPLPQMNQRFNIHNNRKRRRDSDGVDGFEAEGKKDKKDYDNF
                     "
ORIGIN      
        1 gctccccgcc ttctcccttt ttcctcttcc ctccgcgccc cgcggtccgg ctcccgccga
       61 cgctccggcc ccgcggccgc atccgccccc gcccccgccg caccgccccg agagcccggg
      121 tccccgcggc aggcgcggcc gggagccccc cgcaccctcc ccacacccgc ccttccctgc
      181 cgtgtcgcac tcggcctccg gctccggcgg acagcggccc ccggaggggc cgagacgggg
      241 gagggatgac tgcggagggg ttggggacgt ggagggcctt ggacggcccc ggagttctgt
      301 tctctggagc agcatggacc agcagccagc ttcgggtgta gcctattccc atccaactac
      361 agttgctagc tacactgtcc atcaggctcc agtagctgct cacacagtta ctgctgctta
      421 cgcaccagca gccgccacag ttgcagttgc caggcctgct ccagttgctg ttgcagctgc
      481 tgcaacagct gctgcatatg gaggctaccc cactgcacac acagcaaccg actatggtta
      541 cacccagagg caacaagaag caccaccacc accaccccca gctactacac agaactacca
      601 ggactcatat tcgtatgtaa gatccacagc ccctgctgta gcttatgata gtaagcagta
      661 ctaccaacag ccaacagcaa ctgctgctgc tgtagctgct gctgcccagc ctcagccttc
      721 tgttgctgaa acctactatc agacagcccc taaagcaggt tatagccaag gtgcaacaca
      781 gtatactcaa gcgcagcaag ctcggcaagt gacagccata aaaccagcca caccaagtcc
      841 agctaccact actttctcca tttatcctgt gtcctccact gtacaaccgg tggcagctgc
      901 agctactgtg gtaccatcct atactcagag tgctacttac agtaccacag cagttactta
      961 ttctggtaca tcttattcag gttatgaagc agccgtatat tcagctgcgt cttcctacta
     1021 ccaacagcag cagcaacaac agaagcaagc agcagcagca gctgctgctg cagcagcaac
     1081 agctgcctgg acagggacca cctttactaa aaaaacacca ttccaaaata aacaactgaa
     1141 accaaaacag cctcccaaac caccccagat tcattattgt gatgtttgta agatcagctg
     1201 tgctggacca cagacttata aagagcactt agaaggacag aaacataaaa aaaaggaagc
     1261 cgcattgaaa gcctctcaaa ataccagcag cagcaacaac tcaactcgtg ggacacaaaa
     1321 tcagctacgt tgcgagctct gtgatgtgtc ttgtacagga gcagatgcat atgctgccca
     1381 cattcgtggt gctaagcatc agaaagtggt taaattacac acaaaacttg gtaaacctat
     1441 tccttcaacg gaaccaaatg ttgttagcca agctacttct tcaacagctg catctgcttc
     1501 aaaaccaact gcctctcctt caagtattgg cgcaagcaat tgtactctga acacgtcatc
     1561 aattgcaact tcttcagtga aaggtctttc aactacagga aactcgtctc ttaatagtac
     1621 atccaacact aaagtgtcag cgatacctac caatatggct gccaagaaaa catctacacc
     1681 caaaataaac tttgttggtg gaaataagct acagtcaaca ggaaataaaa cggaagactt
     1741 aaaaggaatt gactgtgtta agaatactcc tgctgcctct gctgtgcaga ttccagaagt
     1801 aaagcaagat gcagggtcag aaccagtcac acctgcgtcc cttgctgctc tgcagagtga
     1861 tgtacaacca gtgggacatg attatgttga agaggtacga aatgatgaag gaaaagtcat
     1921 tcgcttccat tgtaaattat gtgaatgcag ctttaatgac cccaatgcta aagagatgca
     1981 cctaaaagga cgaagacata gacttcagta taaaaaaaaa gtaaatccag atttgcaagt
     2041 agaagtgaag cccagtattc gtgccagaaa aattcaagaa gagaaaatga gaaagcaaat
     2101 gcagaaggag gaatattggc ggagacgaga agaggaggaa cgctggagga tggagataag
     2161 acgttatgaa gaagacatgt actggagaag aatggaggaa gagcagcatc attgggatga
     2221 tcgcagacga atgcctgatg gcggctatcc tcatggtcct cccggcccac taggtctttt
     2281 gggagtccga ccaggcatgc ctccccagcc gcagggtcct gcccccttac ggcgtcctga
     2341 ctcatctgat gatcgttatg taatgacaaa gcatgcaact atttatccaa ctgaagaaga
     2401 gttacaagcc gtccagaaaa ttgtttctat cactgagcgt gctttaaagc ttgtttcaga
     2461 cagtttgtcg gaacatgaga agagcaagaa caaagaggga gatgataaga aagagggagg
     2521 taaagacaga gctctgaaag gggtgttgcg agtaggcgtg ctggcaaaag gattacttct
     2581 ccgaggagac aggaatgtca accttgtttt gctgtgctca gaaaaacctt caaagtcgtt
     2641 attaagccgt attgcagaaa acctacccaa acagcttgct gttataagtc ctgagaagta
     2701 tgacataaaa tgtgccgtgt ctgaggcagc gataattttg aactcgtgtg tggagcccaa
     2761 aatgcaagtc actatcaccc tgacatctcc aattattcga gaagagaaca tgagggaagg
     2821 agatgtaacc tcgggtatgg tgaaagaccc accggacgtc ttggacaggc aaaaatgcct
     2881 tgacgctctg gctgctctac gccacgctaa gtggttccag gctagagcta atggcctaca
     2941 gtcgtgtgtg attatcatac gtattctccg agacctttgt caacgagttc caacgtggtc
     3001 tgattttcct agctgggcta tggagttact ggtggagaag gcaattagca gtgcttctag
     3061 tcctcaaagc cctggagatg ccctgagaag agtatttgag tgcatttctt cagggattat
     3121 tctcaaaggc agccctggac ttctggaccc ttgtgaaaag gatccctttg acactttggc
     3181 aacaatgact gaccaacagc gtgaagacat tacatccagt gcacagtttg cattgagact
     3241 ccttgcattc cgtcagatac acaaagttct ggggatggat ccattaccac aaatgaatca
     3301 gcgctttaac atccacaaca acaggaaacg aagaagggat agtgatggag tggatggatt
     3361 tgaagctgag gggaagaaag acaaaaagga ttatgataac ttttaaaaag tttgtgtaaa
     3421 tcttcagtgt tacagtaggt gccggtttat tggctgtttt ccattcatat taatctctac
     3481 tttaaaagtt tatcaagagt ataaagagtt tcatggaaga accaagtttt tctatgatta
     3541 aaaacttatt gtacagtgtc aggtattata tggatggaaa gaaagagatt tgactagggg
     3601 gaatatattg gtctttcccc ccccccaccc tttttcatta ttttgatttt attgactggt
     3661 tgcccttact ccctgtattt ttgtgtcttt tattaactag tgcattgtgt tattaaatct
     3721 tttctgtatg taatacagga tttgtgcttc agttgctctg tgtattttga tacttttatt
     3781 gagaagttct gtttgctttg acacagttgt aagttacttt gtgttataga tggcaccctt
     3841 tacccttact actttatagc agtgcggttt ttttgtaacg tgaaactgca ggagttttcc
     3901 tttgttattc tgtatgtgaa ggattacaat ataaaagcta ccctgccatc taagtgctca
     3961 gaaatagctg tttctgcaga tcttgtggca tttgtctatc tagtgtgata tataaaggtg
     4021 taattaagac aaattcctta atctaatcaa gtttgctgtt agttgtgcat tagcagtata
     4081 aaagctaata tatattatat ggtcttgcaa cagttttaaa gcctctgcat aattgataaa
     4141 aaaatgcatg acatttttgt ttttaataga catttaaagt aataatttta ggtttaacac
     4201 gtagatcttt gtacagttga ctttttgaca tagcaaggcc aaaaataact ttctgaatac
     4261 tttttcttct gtacaagtgg aaagggaatt tttcacatct aagtgggcta ttgttttcaa
     4321 aagaacttta tcattgtgca actaacaata actagccctg actatgtgac agttccctgt
     4381 tgatgtgtgc aattactcta gcggcttcta cagtcttaac acagttgaat gatccccaca
     4441 tcctgtcacc cagatcattt ataggtctat taactgtgag attgataaag tattactgat
     4501 ttaaaaaaat aagagtatct aagaaaaaaa aaaaacagaa aattatttgg tgtggccatc
     4561 caacatgctt atgtcttata cagaatgcta atcccctggc agtggtgtaa tgagaggtca
     4621 caccttactg tgatgtgtgt gtgctctggt gcacagatgt cattttgttg tcacagcact
     4681 acagtgagat acagaataaa cacttaaatt catgtaa
//
