LOCUS       NM_001356994            1393 bp    mRNA    linear   ROD 07-AUG-2023
DEFINITION  Mus musculus zinc finger like protein 1 (Zfpl1), transcript variant
            2, mRNA.
ACCESSION   NM_001356994 XM_006531861
VERSION     NM_001356994.1
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1393)
  AUTHORS   Wang F, Tan P, Zhang P, Ren Y, Zhou J, Li Y, Hou S, Li S, Zhang L,
            Ma Y, Wang C, Tang W, Wang X, Huo Y, Hu Y, Cui T, Niu C, Wang D,
            Liu B, Lan Y and Yu J.
  TITLE     Single-cell architecture and functional requirement of alternative
            splicing during hematopoietic stem cell formation
  JOURNAL   Sci Adv 8 (1), eabg5369 (2022)
   PUBMED   34995116
REFERENCE   2  (bases 1 to 1393)
  AUTHORS   Jiang D, Burger CA, Casasent AK, Albrecht NE, Li F and Samuel MA.
  TITLE     Spatiotemporal gene expression patterns reveal molecular
            relatedness between retinal laminae
  JOURNAL   J Comp Neurol 528 (5), 729-755 (2020)
   PUBMED   31609468
REFERENCE   3  (bases 1 to 1393)
  AUTHORS   Dickinson ME, Flenniken AM, Ji X, Teboul L, Wong MD, White JK,
            Meehan TF, Weninger WJ, Westerberg H, Adissu H, Baker CN, Bower L,
            Brown JM, Caddle LB, Chiani F, Clary D, Cleak J, Daly MJ, Denegre
            JM, Doe B, Dolan ME, Edie SM, Fuchs H, Gailus-Durner V, Galli A,
            Gambadoro A, Gallegos J, Guo S, Horner NR, Hsu CW, Johnson SJ,
            Kalaga S, Keith LC, Lanoue L, Lawson TN, Lek M, Mark M, Marschall
            S, Mason J, McElwee ML, Newbigging S, Nutter LM, Peterson KA,
            Ramirez-Solis R, Rowland DJ, Ryder E, Samocha KE, Seavitt JR,
            Selloum M, Szoke-Kovacs Z, Tamura M, Trainor AG, Tudose I, Wakana
            S, Warren J, Wendling O, West DB, Wong L, Yoshiki A, MacArthur DG,
            Tocchini-Valentini GP, Gao X, Flicek P, Bradley A, Skarnes WC,
            Justice MJ, Parkinson HE, Moore M, Wells S, Braun RE, Svenson KL,
            de Angelis MH, Herault Y, Mohun T, Mallon AM, Henkelman RM, Brown
            SD, Adams DJ, Lloyd KC, McKerlie C, Beaudet AL, Bucan M and Murray
            SA.
  CONSRTM   International Mouse Phenotyping Consortium; Jackson Laboratory;
            Infrastructure Nationale PHENOMIN, Institut Clinique de la Souris
            (ICS); Charles River Laboratories; MRC Harwell; Toronto Centre for
            Phenogenomics; Wellcome Trust Sanger Institute; RIKEN BioResource
            Center
  TITLE     High-throughput discovery of novel developmental phenotypes
  JOURNAL   Nature 537 (7621), 508-514 (2016)
   PUBMED   27626380
  REMARK    Erratum:[Nature. 2017 Nov 16;551(7680):398. PMID: 29144450]
REFERENCE   4  (bases 1 to 1393)
  AUTHORS   Koscielny G, Yaikhom G, Iyer V, Meehan TF, Morgan H,
            Atienza-Herrero J, Blake A, Chen CK, Easty R, Di Fenza A, Fiegel T,
            Grifiths M, Horne A, Karp NA, Kurbatova N, Mason JC, Matthews P,
            Oakley DJ, Qazi A, Regnart J, Retha A, Santos LA, Sneddon DJ,
            Warren J, Westerberg H, Wilson RJ, Melvin DG, Smedley D, Brown SD,
            Flicek P, Skarnes WC, Mallon AM and Parkinson H.
  TITLE     The International Mouse Phenotyping Consortium Web Portal, a
            unified point of access for knockout mice and related phenotyping
            data
  JOURNAL   Nucleic Acids Res 42 (Database issue), D802-D809 (2014)
   PUBMED   24194600
REFERENCE   5  (bases 1 to 1393)
  AUTHORS   Guo G, Huss M, Tong GQ, Wang C, Li Sun L, Clarke ND and Robson P.
  TITLE     Resolution of cell fate decisions revealed by single-cell gene
            expression analysis from zygote to blastocyst
  JOURNAL   Dev Cell 18 (4), 675-685 (2010)
   PUBMED   20412781
REFERENCE   6  (bases 1 to 1393)
  AUTHORS   Chiu CF, Ghanekar Y, Frost L, Diao A, Morrison D, McKenzie E and
            Lowe M.
  TITLE     ZFPL1, a novel ring finger protein required for cis-Golgi integrity
            and efficient ER-to-Golgi transport
  JOURNAL   EMBO J 27 (7), 934-947 (2008)
   PUBMED   18323775
REFERENCE   7  (bases 1 to 1393)
  AUTHORS   Hoppener JW, De Wit MJ, Simarro-Doorten AY, Roijers JF, van
            Herrewaarden HM, Lips CJ, Parente F, Quincey D, Gaudray P, Khodaei
            S, Weber G, Teh B, Farnebo F, Larsson C, Zhang CX, Calender A,
            Pannett AA, Forbes SA, Bassett JH, Thakker RV, Lemmens I, Van de
            Ven WJ and Kas K.
  TITLE     A putative human zinc-finger gene (ZFPL1) on 11q13, highly
            conserved in the mouse and expressed in exocrine pancreas. The
            European Consortium on MEN 1
  JOURNAL   Genomics 50 (2), 251-259 (1998)
   PUBMED   9653652
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC131692.5, BU054783.1, CX202011.1, AK005244.1 and BB753345.1.
            
            [WARNING] On Oct 11, 2023 this sequence was replaced by
            NM_001356994.2.
            
            On Oct 14, 2017 this sequence version replaced XM_006531861.1.
            
            Transcript Variant: This variant (2) differs in the 5' UTR compared
            to variant 1.  Variants 1 and 2 encode the same protein.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR7345562.1986774.1, CX202011.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164131, SAMN01164135
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-31                AC131692.5         68860-68890
            32-40               BU054783.1         1-9
            41-103              BU054783.1         11-73
            104-620             CX202011.1         1-517
            621-1156            AK005244.1         480-1015
            1157-1159           AC131692.5         72842-72844
            1160-1385           AK005244.1         1019-1244
            1386-1393           BB753345.1         506-513
FEATURES             Location/Qualifiers
     source          1..1393
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="19"
                     /map="19 4.34 cM"
     gene            1..1393
                     /gene="Zfpl1"
                     /note="zinc finger like protein 1"
                     /db_xref="GeneID:81909"
                     /db_xref="MGI:MGI:1891017"
     exon            1..181
                     /gene="Zfpl1"
                     /inference="alignment:Splign:2.1.0"
     exon            182..291
                     /gene="Zfpl1"
                     /inference="alignment:Splign:2.1.0"
     CDS             190..1122
                     /gene="Zfpl1"
                     /codon_start=1
                     /product="zinc finger protein-like 1"
                     /protein_id="NP_001343923.1"
                     /db_xref="CCDS:CCDS29492.1"
                     /db_xref="GeneID:81909"
                     /db_xref="MGI:MGI:1891017"
                     /translation="MGLCKCPKRKVTNLFCFEHRVNVCEHCLVANHAKCIVQSYLQWL
                     QDSDYNPNCRLCNTPLASRETTRLVCYDLFHWACINERAAQLPRNTAPAGYQCPSCNG
                     PIFPPANLAGPVASALREKLATVNWARAGLGLPLIDEVISPEPEPLNSSDFSDWSSFN
                     ATTTSVQEERASTPSAPAFYSQAPRPPPSPSRPEQHTVIHMGSTEALAHAPRKVYDTR
                     DDDRTAGIHGDCDDDKYRRRPALGWLAQLLRSRAGSRKRPLTLLQRAGLLLLLGLLGF
                     LALLALMSRLGRAAADSDPNLDPLMNPHIRVGPS"
     exon            292..403
                     /gene="Zfpl1"
                     /inference="alignment:Splign:2.1.0"
     exon            404..597
                     /gene="Zfpl1"
                     /inference="alignment:Splign:2.1.0"
     exon            598..670
                     /gene="Zfpl1"
                     /inference="alignment:Splign:2.1.0"
     exon            671..817
                     /gene="Zfpl1"
                     /inference="alignment:Splign:2.1.0"
     exon            818..935
                     /gene="Zfpl1"
                     /inference="alignment:Splign:2.1.0"
     exon            936..1393
                     /gene="Zfpl1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tatcctgcgg cgctgtggcg tcatcagcgt gcgccgcacc cggaagagac gtggcagcgg
       61 agggataatc aggccggacc tgaagggagc ggagctgcag ctaccggagt tggtgagctc
      121 agtccccggc cttccgcgct tttcattacc gtacgcaccg gtcacgatcg gcatcgcgga
      181 ggatcggtca tgggactttg caagtgcccc aagaggaagg tgacgaacct gttctgcttc
      241 gaacaccgag ttaacgtctg cgagcactgc ctagtagcca atcacgccaa gtgcatcgtg
      301 cagtcctact tgcagtggct acaagatagt gactacaacc ccaattgccg cctgtgcaac
      361 acacccctgg ccagtcggga gaccacccgt cttgtttgct atgatctctt tcattgggcc
      421 tgtatcaatg aacgtgctgc ccagctacca cgaaacacag cgcctgcagg ctaccagtgc
      481 cccagctgta atggccccat cttcccccca gccaacctcg ctggcccagt ggcttcagca
      541 ctgagagaaa agctagccac agtcaactgg gcccgggcag gactgggcct ccctctgatc
      601 gatgaggtga taagcccaga gcccgagccc ctcaattcct cagacttctc tgattggtcc
      661 agctttaatg ccaccaccac ctctgtgcaa gaggagagag ccagcactcc atctgcgcct
      721 gctttctata gccaggctcc ccgccctcct ccctccccaa gccgtcccga gcagcacaca
      781 gtcatacaca tggggagtac tgaagccctg gcacacgccc caaggaaagt atatgacaca
      841 cgggatgatg accggacagc aggcattcat ggagactgtg atgatgacaa ataccgccgc
      901 cggcctgctc tgggctggct ggcccagctg ctcaggagcc gggctgggtc ccggaagcgg
      961 ccactgactc tgctccagcg ggcagggctg ctgctcctgt tggggctgct gggcttcctg
     1021 gcactcctcg ccctcatgtc tcggctcggc cgggctgcag cagacagtga tcccaatctg
     1081 gacccgctca tgaaccctca catccgtgta ggtccttcct gagcccttgc ttgtgtttgg
     1141 gccagcttag gacctggagt cctggggaga gaaggtgggg aggcttgagg cctttctcta
     1201 ctcctctccc tcagtcctga gacactaaga tcccctgggc caagtcagtt ggaggctgag
     1261 gctgcaaggc caggtgtgta gcccttttga tcaaattggt cttcacctgc ttgcctctga
     1321 ggctccatcc ttctacttca accctcagag gagcagacag gtgcaaataa acaacagact
     1381 ttattaaacc ttc
//
