LOCUS       NM_001290196            2810 bp    mRNA    linear   ROD 16-JAN-2024
DEFINITION  Mus musculus zinc finger protein 998 (Zfp998), transcript variant
            1, mRNA.
ACCESSION   NM_001290196
VERSION     NM_001290196.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2810)
  AUTHORS   Young GR, Ferron AKW, Panova V, Eksmond U, Oliver PL, Kassiotis G
            and Stoye JP.
  TITLE     Gv1, a Zinc Finger Gene Controlling Endogenous MLV Expression
  JOURNAL   Mol Biol Evol 38 (6), 2468-2474 (2021)
   PUBMED   33560369
REFERENCE   2  (bases 1 to 2810)
  AUTHORS   Treger RS, Pope SD, Kong Y, Tokuyama M, Taura M and Iwasaki A.
  TITLE     The Lupus Susceptibility Locus Sgp3 Encodes the Suppressor of
            Endogenous Retrovirus Expression SNERV
  JOURNAL   Immunity 50 (2), 334-347 (2019)
   PUBMED   30709743
REFERENCE   3  (bases 1 to 2810)
  AUTHORS   Yokoyama S, Ito Y, Ueno-Kudoh H, Shimizu H, Uchibe K, Albini S,
            Mitsuoka K, Miyaki S, Kiso M, Nagai A, Hikata T, Osada T, Fukuda N,
            Yamashita S, Harada D, Mezzano V, Kasai M, Puri PL, Hayashizaki Y,
            Okado H, Hashimoto M and Asahara H.
  TITLE     A systems approach reveals that the myogenesis genome network is
            regulated by the transcriptional repressor RP58
  JOURNAL   Dev Cell 17 (6), 836-848 (2009)
   PUBMED   20059953
REFERENCE   4  (bases 1 to 2810)
  AUTHORS   Taniwaki T, Haruna K, Nakamura H, Sekimoto T, Oike Y, Imaizumi T,
            Saito F, Muta M, Soejima Y, Utoh A, Nakagata N, Araki M, Yamamura K
            and Araki K.
  TITLE     Characterization of an exchangeable gene trap using pU-17 carrying
            a stop codon-beta geo cassette
  JOURNAL   Dev Growth Differ 47 (3), 163-172 (2005)
   PUBMED   15840001
REFERENCE   5  (bases 1 to 2810)
  AUTHORS   Araki K, Imaizumi T, Sekimoto T, Yoshinobu K, Yoshimuta J, Akizuki
            M, Miura K, Araki M and Yamamura K.
  TITLE     Exchangeable gene trap using the Cre/mutated lox system
  JOURNAL   Cell Mol Biol (Noisy-le-grand) 45 (5), 737-750 (1999)
   PUBMED   10512203
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC164297.2 and AK010804.1.
            
            On Jul 30, 2020 this sequence version replaced NM_001290196.1.
            
            Transcript Variant: This variant (1) represents the longer variant
            and encodes the longer isoform (a).
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR15390195.714143.1,
                                           SRR15390196.344155.1 [ECO:0000332]
            RNAseq introns              :: partial sample support SAMN00849384
                                           [ECO:0000350]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-11                AC164297.2         58857-58867         c
            12-45               AK010804.1         3-36
            46-110              AC164297.2         58758-58822         c
            111-298             AK010804.1         102-289
            299-2810            AC164297.2         47456-49967         c
FEATURES             Location/Qualifiers
     source          1..2810
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="13"
                     /map="13 34.52 cM"
     gene            1..2810
                     /gene="Zfp998"
                     /gene_synonym="2410141K09Rik; 4930482J15Rik; Ayu21-35;
                     Gt(pU21)35Imeg; Snerv1"
                     /note="zinc finger protein 998"
                     /db_xref="GeneID:76803"
                     /db_xref="MGI:MGI:1924053"
     exon            1..110
                     /gene="Zfp998"
                     /gene_synonym="2410141K09Rik; 4930482J15Rik; Ayu21-35;
                     Gt(pU21)35Imeg; Snerv1"
                     /inference="alignment:Splign:2.1.0"
     CDS             108..1502
                     /gene="Zfp998"
                     /gene_synonym="2410141K09Rik; 4930482J15Rik; Ayu21-35;
                     Gt(pU21)35Imeg; Snerv1"
                     /note="isoform a is encoded by transcript variant 1;
                     Gt(Ayu21)35Imeg; zinc finger protein-like"
                     /codon_start=1
                     /product="zinc finger protein-like isoform a"
                     /protein_id="NP_001277125.1"
                     /db_xref="CCDS:CCDS84031.1"
                     /db_xref="GeneID:76803"
                     /db_xref="MGI:MGI:1924053"
                     /translation="MDAMTFDDVHVNFTKEEWNLLEPSQMNLYKDVMLETYWNLTSIG
                     YKWEDHHIEEPCQSSRRHTRHVRSHSWKKLYECNQCGKAFTSHSSLRYHKRTHTGEKP
                     YECNHCGKAFARPAHLQRHKRTHTGEKPYECNQCSKAFSCHSGLRYHKRTHTGEKPYE
                     CNQCGKAFARPADLQCHKRTHTGEKPYECNQCGKAFARPANLQCHKRTHTGEKPYECN
                     QCGKAFSCQGGLRYHKRTHTGEKPYECNQCGKAFARPSHLQCHKRTHTGEKPYECNQC
                     GKAFSSHISLRYHKRTHTGEKPYECNQCGKAFSGHSGLRYHKRTHTGEKPYECNQCGK
                     AFATPSHLQCHKRTHTGEKPYECNQCSKAFARPAHLQHHKRTHTGEKPYECNQCGKAF
                     ARLSHLQCHKRTHTGEKPYECNQCGKAFSCHNSLRYHKGTHTGEKPYECNQCGKALAT
                     STHLQCHKRTHTGE"
     exon            111..237
                     /gene="Zfp998"
                     /gene_synonym="2410141K09Rik; 4930482J15Rik; Ayu21-35;
                     Gt(pU21)35Imeg; Snerv1"
                     /inference="alignment:Splign:2.1.0"
     exon            238..298
                     /gene="Zfp998"
                     /gene_synonym="2410141K09Rik; 4930482J15Rik; Ayu21-35;
                     Gt(pU21)35Imeg; Snerv1"
                     /inference="alignment:Splign:2.1.0"
     exon            299..2810
                     /gene="Zfp998"
                     /gene_synonym="2410141K09Rik; 4930482J15Rik; Ayu21-35;
                     Gt(pU21)35Imeg; Snerv1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ctaaaagatt gctgtggctg tgcaggcttg aatggttctc tgtgtcctgc tctgagatct
       61 gctgtcgggt gcattgaggg gacctcagga agctctgaga tttagacatg gatgcaatga
      121 cttttgacga tgtgcatgtg aacttcacta aagaagagtg gaatttgctg gaaccttccc
      181 agatgaatct ctacaaagac gtgatgttgg agacctactg gaaccttact tctataggct
      241 acaaatggga agaccatcat attgaagaac catgtcaaag ttctcgaaga catacaaggc
      301 atgtcaggag tcatagttgg aagaaactct atgaatgtaa tcaatgtggt aaagccttta
      361 cctctcacag tagtctcaga tatcataaaa gaacccatac tggagagaaa ccttatgaat
      421 gtaatcattg tggtaaagcc tttgcaagac ctgctcatct ccaaagacat aaaagaaccc
      481 atactggaga gaaaccttat gagtgtaatc aatgtagtaa agccttttcc tgtcacagtg
      541 gtctcagata tcataaaaga acccatactg gagagaaacc ttatgaatgt aatcaatgtg
      601 ggaaagcctt tgcaagaccc gctgatctcc aatgtcataa aaggacccat actggagaga
      661 aaccttatga atgtaatcaa tgtgggaaag cctttgcaag acccgctaat ctccaatgtc
      721 ataaaagaac ccatactgga gagaaacctt atgaatgtaa tcaatgtggt aaagcctttt
      781 cttgtcaggg tggtctcaga tatcataaaa gaacccatac tggagagaaa ccttatgaat
      841 gtaatcaatg tgggaaagcc tttgcaagac ccagtcatct ccaatgtcat aaaagaaccc
      901 atactggaga gaaaccttat gaatgtaatc aatgtggtaa agccttttcc tctcacatta
      961 gtctcagata tcataaaaga acccatactg gagaaaagcc ttatgaatgt aatcaatgtg
     1021 gtaaagcctt ttccggtcac agtggtctca gatatcataa aagaacccat actggagaaa
     1081 aaccttatga atgtaatcag tgtggtaaag cctttgcaac acccagtcat ctccaatgtc
     1141 ataaaagaac ccatactgga gagaaaccat atgaatgtaa tcaatgtagt aaagcctttg
     1201 caagacccgc tcatctccaa catcataaaa gaacccatac tggagagaaa ccttatgaat
     1261 gtaatcaatg tgggaaagcc tttgcaaggc tcagtcatct ccaatgtcat aaaagaaccc
     1321 acaccggaga gaaaccttat gaatgtaatc aatgtgggaa agccttttcc tgtcacaata
     1381 gtctcagata tcataaagga acccatactg gagaaaaacc ttatgaatgt aatcagtgtg
     1441 gtaaagccct tgctacatcc actcatctcc aatgtcataa aagaacccat actggagagt
     1501 aatcttagga taattatcaa tgtggaaaga ccattcacaa gggagaagtc aacaaagaca
     1561 taaaaaaaca catagtggag agaaatctta atgtaaccaa tgtggtaaaa gccttttcac
     1621 aaagtaatta tctcaaaaag acaaaagaac caacccattt tggagagtaa ccttatgaat
     1681 gtaagcaatg tgataatgaa gtctttgcag ttttcactag tctccaaaaa ataaaagata
     1741 ccatactgga aagaaacctc atgaatataa tcaatgtggg acacacttca gaactttgta
     1801 atctccatta ttttaaaagt acacatacag gagagaaacc ttgtgaatgt agtcagcgtt
     1861 gtaaagcatt tcaagtcaca gtcatctgca atgacataaa agatcacata caagagagaa
     1921 acctcatgaa ggttgtcaat gcagtaaagc ctttgcatgt cttaattctt cacatgtata
     1981 caaagtgaag cacactgggg agaaccctca ttattgtaat cactgtggta aaaaccttgg
     2041 caatttactg tcatctgcaa ctacataaag aacacattcc aaaaagtaac tctttccatt
     2101 tttccagagt actaatccct tgtgtgacac agtcatcacc ccatacataa aagaacacat
     2161 atggcagaaa acctgcatga atataatgaa taaggtaaac cctttccagg ccacagtcat
     2221 ctccaaacat acaaaaaact gtgcaggaga gaaaccttaa gaaggtaatt gatgtgagaa
     2281 aacctttgca tatcacagtc atctccaagt acattaatga gcacatagtt gagagaagcc
     2341 ctgtgattgt aatgaatgtg ttaaagcctt cgcatgtcgt tgtacactcc aaacacttaa
     2401 aggaacacag gttttacaga caccttataa atgcagtgaa tgtgaaaggg actatgaata
     2461 tcacgatagt ttccaaagac gtaaaagaac acataattga tggaaatctt gtgtgtaggc
     2521 tctcccagcc tgaagcaggc tgatccagac tttgaccttg ctgccactga gaattagacc
     2581 acctggggtg gacccttgct ccctagatca ctatattgtt cagccactgc cactgttctt
     2641 caagactttg caacctgctg aaaggcccct gagatattcc aaagactaca cccagacctg
     2701 caagtcatca cctgcagctg gttccaagca ccaagaatgg tttggtggga atgggcctct
     2761 tcccctttat aagcacattt gctattaaac atttgagctt tgatcaggaa
//
