LOCUS       NM_001164581            2718 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus zinc finger protein 961 (Zfp961), mRNA.
ACCESSION   NM_001164581 XM_904244 XM_981031
VERSION     NM_001164581.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2718)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 2718)
  AUTHORS   Huang,L., Liu,P., Yang,Q. and Wang,Y.X.
  TITLE     The KRAB Domain-Containing Protein ZFP961 Represses Adipose
            Thermogenesis and Energy Expenditure through Interaction with
            PPARalpha
  JOURNAL   Adv Sci (Weinh) 9 (2), e2102949 (2022)
   PUBMED   34747141
REFERENCE   3  (bases 1 to 2718)
  AUTHORS   Timmermans,S. and Libert,C.
  TITLE     Overview of inactivating mutations in the protein-coding genome of
            the mouse reference strain C57BL/6J
  JOURNAL   JCI Insight 3 (13), 121758 (2018)
   PUBMED   29997285
  REMARK    Publication Status: Online-Only
REFERENCE   4  (bases 1 to 2718)
  AUTHORS   Sundberg,J.P., Dadras,S.S., Silva,K.A., Kennedy,V.E., Garland,G.,
            Murray,S.A., Sundberg,B.A., Schofield,P.N. and Pratt,C.H.
  TITLE     Systematic screening for skin, hair, and nail abnormalities in a
            large-scale knockout mouse program
  JOURNAL   PLoS One 12 (7), e0180682 (2017)
   PUBMED   28700664
  REMARK    Publication Status: Online-Only
REFERENCE   5  (bases 1 to 2718)
  AUTHORS   Koscielny,G., Yaikhom,G., Iyer,V., Meehan,T.F., Morgan,H.,
            Atienza-Herrero,J., Blake,A., Chen,C.K., Easty,R., Di Fenza,A.,
            Fiegel,T., Grifiths,M., Horne,A., Karp,N.A., Kurbatova,N.,
            Mason,J.C., Matthews,P., Oakley,D.J., Qazi,A., Regnart,J.,
            Retha,A., Santos,L.A., Sneddon,D.J., Warren,J., Westerberg,H.,
            Wilson,R.J., Melvin,D.G., Smedley,D., Brown,S.D., Flicek,P.,
            Skarnes,W.C., Mallon,A.M. and Parkinson,H.
  TITLE     The International Mouse Phenotyping Consortium Web Portal, a
            unified point of access for knockout mice and related phenotyping
            data
  JOURNAL   Nucleic Acids Res 42 (Database issue), D802-D809 (2014)
   PUBMED   24194600
REFERENCE   6  (bases 1 to 2718)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
REFERENCE   7  (bases 1 to 2718)
  AUTHORS   Agata,Y., Matsuda,E. and Shimizu,A.
  TITLE     Rapid and efficient cloning of cDNAs encoding Kruppel-like zinc
            finger proteins by degenerate PCR
  JOURNAL   Gene 213 (1-2), 55-64 (1998)
   PUBMED   9630514
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC164531.9.
            
            On or before Sep 9, 2009 this sequence version replaced
            XM_904244.3, XM_981031.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR7345562.357576.1,
                                           SRR1660811.225920.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849380
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-95                AC164531.9         138908-139002
            96-222              AC164531.9         153636-153762
            223-283             AC164531.9         153942-154002
            284-2718            AC164531.9         155741-158175
FEATURES             Location/Qualifiers
     source          1..2718
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="8"
                     /map="8 34.63 cM"
     gene            1..2718
                     /gene="Zfp961"
                     /gene_synonym="A230105L22Rik; BC065788; mszf37; mszf55-2"
                     /note="zinc finger protein 961"
                     /db_xref="GeneID:234413"
                     /db_xref="MGI:MGI:3583954"
     exon            1..95
                     /gene="Zfp961"
                     /gene_synonym="A230105L22Rik; BC065788; mszf37; mszf55-2"
                     /inference="alignment:Splign:2.1.0"
     CDS             30..1364
                     /gene="Zfp961"
                     /gene_synonym="A230105L22Rik; BC065788; mszf37; mszf55-2"
                     /codon_start=1
                     /product="uncharacterized protein LOC234413"
                     /protein_id="NP_001158053.1"
                     /db_xref="CCDS:CCDS52591.1"
                     /db_xref="GeneID:234413"
                     /db_xref="MGI:MGI:3583954"
                     /translation="MRKVRGSDTRHSAAQARRECTMASVTFEDVAVRFTQEEWTLLDP
                     SQKILYGDVMQETYRNLTSVGINWECWDLEAYFRSLGRNLRVQLVKRDCDLKNSDPCG
                     ETVAQPKLPECHTASQSSLKRHTTSNSKYRPCDYQKYVKKYYECKVCDKAFTCLGSLK
                     KHKKTHAGGKPYKCKYCEKAFSYRHCAERHMLTHSVDRHKCVVCREAFPNAVALREHK
                     TIHSGEIPECKECGRMFWTASSLDMHKRLHTTEKLYECKHCGKAFMRYCSFQLHKRTH
                     TGEKPFECKQCGKTFRHSSHVQAHKRIHTGEKPYECMQCGKTFTSGHCARRHLGTHSG
                     AWPYKCEVCGKAYPYVYSLRNHKKSHNEEKLYECKQCGKAFKYISSLRNHETTHTGEK
                     PYECKECGKAFSCSSYIQNHMRTHKRQSYECKECGKVFSYSKSLRRHMTTHS"
     exon            96..222
                     /gene="Zfp961"
                     /gene_synonym="A230105L22Rik; BC065788; mszf37; mszf55-2"
                     /inference="alignment:Splign:2.1.0"
     exon            223..283
                     /gene="Zfp961"
                     /gene_synonym="A230105L22Rik; BC065788; mszf37; mszf55-2"
                     /inference="alignment:Splign:2.1.0"
     exon            284..2718
                     /gene="Zfp961"
                     /gene_synonym="A230105L22Rik; BC065788; mszf37; mszf55-2"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2696..2701
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Zfp961"
                     /gene_synonym="A230105L22Rik; BC065788; mszf37; mszf55-2"
                     /note="hexamer: AATAAA"
     polyA_site      2718
                     /gene="Zfp961"
                     /gene_synonym="A230105L22Rik; BC065788; mszf37; mszf55-2"
                     /note="major polyA site"
ORIGIN      
        1 ttttcggcgc tgtccttggc ggcttagcaa tgcgcaaggt acgcggcagt gacacccgcc
       61 acagcgcagc tcaggcaaga cgagagtgca ccatggcctc ggtgaccttt gaggatgtgg
      121 ctgtgcgctt tacccaagaa gagtggactt tgctggatcc ttcccagaag attctctatg
      181 gagatgtgat gcaggaaacc tataggaatt tgacttctgt aggcataaac tgggaatgct
      241 gggatttgga agcttatttc agaagtctag ggagaaattt gagagtccaa ttggtaaaga
      301 gagactgtga ccttaaaaac agtgacccat gtggagaaac ggttgcccag ccaaagcttc
      361 ctgaatgtca cactgccagt caatcatccc tgaagaggca cactacatct aactctaaat
      421 acagaccatg tgactatcag aaatatgtaa agaaatacta tgaatgtaaa gtatgtgata
      481 aagcctttac gtgccttggc tcccttaaaa aacataaaaa gacccacgct ggagggaaac
      541 catataaatg taagtattgt gagaaagcct tcagttaccg gcactgtgct gaaaggcata
      601 tgctaactca cagtgtagac aggcataaat gcgtggtatg tagagaagcg ttccctaatg
      661 ctgttgccct tagggaacat aaaacaattc actctggaga gatacctgaa tgtaaggaat
      721 gtggaagaat gttctggact gccagttccc tagacatgca taaaaggctt catacaacag
      781 aaaaacttta tgaatgtaaa cactgcggga aagcattcat gagatactgt tcttttcaac
      841 tgcataaaag gactcacact ggggagaaac cttttgaatg taagcaatgt gggaaaacct
      901 tcagacattc cagccatgtt caagcacaca agcgaattca cactggagag aaaccttatg
      961 aatgtatgca gtgcggaaag acattcactt ctggccactg tgccagaaga catttaggga
     1021 ctcacagtgg agcctggcct tacaaatgtg aagtgtgtgg gaaagcttat ccctacgtct
     1081 attcccttcg aaaccacaaa aaaagtcaca acgaagaaaa actttatgaa tgtaaacaat
     1141 gtgggaaagc ctttaaatac atttcttcct tacgcaacca cgagactact cacactggag
     1201 agaagcccta tgaatgtaag gaatgtggga aagcctttag ttgttccagt tacattcaaa
     1261 atcacatgag aacacacaaa aggcagtcct atgaatgtaa ggagtgtggt aaggtgttct
     1321 catattccaa aagtcttcgg agacacatga ctacacatag ttaattagag agggatagtt
     1381 ttaagtataa tttaaatata taaaagagct ctacacattc tagctcctca ttaagaaaca
     1441 aaaaatttca cactggaaaa cgagcctatg aatgcagtat gtgtgccaaa gtctcagtac
     1501 atgccacagt tggacgtgcc aaaactctct aagttgaaag actatcagga agcatttcag
     1561 ctctgaagac ttactgaaga tgatttccac atagagacct tgggaaagct ttctgaccat
     1621 ccttgctagc atacgtggga agacctggtg aagagagaaa aatctatggc tgttggcctc
     1681 tcccatttca ccttggattt tagcagtgtg agaaagtctt aagaaaggtg cagccttagt
     1741 acgtatgcaa accaccacag acccaaactc tgtaaatgga atagctggat tcttaccaag
     1801 ttaacaaatg ttttcaaacc catgaaatga gtttccaaat ctcacgaacc taagaagtat
     1861 aaaacctgtt ggtcccagtg ctgcctagaa gccagccacc atgggaaaca tgacagtgtc
     1921 ctgtggcttc tctcagttgc tcagtgctaa atgtgtcagt atactgtgga cttttgattc
     1981 ttagtcataa ttcggttggt atttttgggg ttttgtttag tctacaattt caaatgtgca
     2041 tactgccttg attatatcta ccccaagaca ctcaacattt ctccctccca ccttcatgtg
     2101 cattccccac cccatcccct tttcttagcc aaagcttcag tgtgttgaag aacaaaacag
     2161 ctgccccctt gtccagcaag cagcacactc ccagtccata gctcctacat ctttcaatcc
     2221 catttatggg ttttaagcaa tcgtttctcg gtggttttaa tatctatttg ttgagggcag
     2281 agtgagtcat gctgaaatat ctgtttatct gaacctacct ggttccactt tcagtctcca
     2341 gtctaagtgg gaccatagct gtctgcaaga ttcccaggct atgtgtgtat tcaatgggag
     2401 tgtttttcct tgttgacaaa ttcttattta ttgcacctta acaaagttag atcctacagt
     2461 aaattgaaat gtatttcaag agctggcaag atggcttggt ggattaagga gcttgctgcc
     2521 taccctgatg acttgagttc aagtcctaga aaaggtgaaa aggaccaact gctttaggtt
     2581 gccttctgac ctccacacgt gccgtggcac gtgtgtatac aataagtgta aaatatagtt
     2641 caaatatgca gacatttaat cataatttta agtacttttg tggttaattt tttaaaataa
     2701 aaatgacttt gaaaattg
//
