LOCUS       NM_001199321            2660 bp    mRNA    linear   ROD 31-OCT-2023
DEFINITION  Mus musculus zinc finger protein 94 (Zfp94), transcript variant 1,
            mRNA.
ACCESSION   NM_001199321
VERSION     NM_001199321.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2660)
  AUTHORS   Bedogni F and Hevner RF.
  TITLE     Cell-Type-Specific Gene Expression in Developing Mouse Neocortex:
            Intermediate Progenitors Implicated in Axon Development
  JOURNAL   Front Mol Neurosci 14, 686034 (2021)
   PUBMED   34321999
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2660)
  AUTHORS   Yokoyama S, Ito Y, Ueno-Kudoh H, Shimizu H, Uchibe K, Albini S,
            Mitsuoka K, Miyaki S, Kiso M, Nagai A, Hikata T, Osada T, Fukuda N,
            Yamashita S, Harada D, Mezzano V, Kasai M, Puri PL, Hayashizaki Y,
            Okado H, Hashimoto M and Asahara H.
  TITLE     A systems approach reveals that the myogenesis genome network is
            regulated by the transcriptional repressor RP58
  JOURNAL   Dev Cell 17 (6), 836-848 (2009)
   PUBMED   20059953
REFERENCE   3  (bases 1 to 2660)
  AUTHORS   Weissig H, Narisawa S, Sikstrom C, Olsson PG, McCarrey JR, Tsonis
            PA, Del Rio-Tsonis K and Millan JL.
  TITLE     Three novel spermatogenesis-specific zinc finger genes
  JOURNAL   FEBS Lett 547 (1-3), 61-68 (2003)
   PUBMED   12860387
  REMARK    GeneRIF: cloning and characterization of its expression during
            spermatogenesis
REFERENCE   4  (bases 1 to 2660)
  AUTHORS   Shannon M and Stubbs L.
  TITLE     Analysis of homologous XRCC1-linked zinc-finger gene families in
            human and mouse: evidence for orthologous genes
  JOURNAL   Genomics 49 (1), 112-121 (1998)
   PUBMED   9570955
REFERENCE   5  (bases 1 to 2660)
  AUTHORS   Stubbs L, Carver EA, Shannon ME, Kim J, Geisler J, Generoso EE,
            Stanford BG, Dunn WC, Mohrenweiser H, Zimmermann W, Watt SM and
            Ashworth LK.
  TITLE     Detailed comparative map of human chromosome 19q and related
            regions of the mouse genome
  JOURNAL   Genomics 35 (3), 499-508 (1996)
   PUBMED   8812484
REFERENCE   6  (bases 1 to 2660)
  AUTHORS   Shannon M, Ashworth LK, Mucenski ML, Lamerdin JE, Branscomb E and
            Stubbs L.
  TITLE     Comparative analysis of a conserved zinc finger gene cluster on
            human chromosome 19q and mouse chromosome 7
  JOURNAL   Genomics 33 (1), 112-120 (1996)
   PUBMED   8617494
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC159140.10 and AK138205.1.
            
            Transcript Variant: This variant (1) encodes the longer protein
            (isoform 1).
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK138205.1, SRR9219379.29266.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164141, SAMN01164142
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-60                AC159140.10        123576-123635
            61-1552             AK138205.1         2-1493
            1553-2660           AC159140.10        137431-138538
FEATURES             Location/Qualifiers
     source          1..2660
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="7"
                     /map="7 10.27 cM"
     gene            1..2660
                     /gene="Zfp94"
                     /note="zinc finger protein 94"
                     /db_xref="GeneID:22756"
                     /db_xref="MGI:MGI:107610"
     exon            1..148
                     /gene="Zfp94"
                     /inference="alignment:Splign:2.1.0"
     exon            149..210
                     /gene="Zfp94"
                     /inference="alignment:Splign:2.1.0"
     exon            211..324
                     /gene="Zfp94"
                     /inference="alignment:Splign:2.1.0"
     exon            325..363
                     /gene="Zfp94"
                     /inference="alignment:Splign:2.1.0"
     CDS             349..1809
                     /gene="Zfp94"
                     /note="isoform 1 is encoded by transcript variant 1"
                     /codon_start=1
                     /product="zinc finger protein 45 isoform 1"
                     /protein_id="NP_001186250.1"
                     /db_xref="CCDS:CCDS57524.1"
                     /db_xref="GeneID:22756"
                     /db_xref="MGI:MGI:107610"
                     /translation="MTKVKEMVTFRDVAVVFSEEELGLLDAAQRKLYHDVMLENFRML
                     LSVGDKNPEEMESLEEVGLRHLSHEALFCSQIWQQVSRDLMKAGDCRVSIRETGSPLK
                     RDDAHGADRKYSKHSGQKPWLQLHCGTDGGEEPYREERSEKDSWDSPLQANGRPPAGE
                     KRYRCEKCDHAFCRLSGLQAHQVRHTGEKPYKCEECGKGFTRASTLLDHQRGHTGNKP
                     YQCHACWKSFCHSSEFNNHIRVHTGEKPYVCEECGKGFSQASHLLAHQRGHTGEKPYK
                     CSTCGKGFSRSSDLNVHCRIHTGEKPYKCETCGKAFSRVSILQVHQRVHSEDKPYQCA
                     ECGRGFTVESHLQAHQRSHTGERPYQCEECGRGFCRASNFLAHRGVHTGEKPYRCDIC
                     GKRFRQRSYLHDHHRIHTGEKPYKCEECGKVFSWSSYLKAHQRVHTGEKPYRCEECGK
                     GFSWSSSLLIHQRAHAEDEGRKDLPASEGSQGKQTL"
     exon            364..490
                     /gene="Zfp94"
                     /inference="alignment:Splign:2.1.0"
     exon            491..2660
                     /gene="Zfp94"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gagcattgcg cgtgcttctg ttgtgcgggc tgatgcgaag cattctggga agtgtttccc
       61 aggtggtttc tgttagcatc cgctcccctt gtcctccctt gagtctcctc tctcccacac
      121 cttcctcgac tgatgcctgg atctggagcc tgatctctca acaaggactg agtggaaggt
      181 gaggtcctga ctccttcagc aaggctcctg aagcagcaga gagacaaggc ttgggatgtt
      241 ggctctgggg tgaggctggg ttcaggaacc ccacctgcct ctgctttcac ctgcgcgtgg
      301 gtgcaacagc tgccatcttt gttgacccag ccatccccca ggaggacaat gaccaaggtc
      361 aaggagatgg tgaccttcag ggacgtggcc gtggtcttca gtgaggagga gctggggctg
      421 ctggacgctg ctcagaggaa gctgtaccac gatgtgatgc tggagaactt caggatgctg
      481 ctctcagtgg gagacaagaa tcctgaggag atggagtctc ttgaggaagt gggattgagg
      541 cacctgtcac atgaggcgct tttctgctca caaatctggc agcaggttag cagggaccta
      601 atgaaggctg gagactgcag agtaagcatc agggaaactg gctctccgtt gaagcgagat
      661 gatgcacatg gtgcagacag gaagtacagc aaacattccg gtcagaaacc atggctccaa
      721 ctccactgtg gaacagatgg tggtgaagaa ccttacagag aggagaggag cgagaaagac
      781 tcttgggact ctcctctgca ggctaacggg cgaccccccg caggagagaa gaggtatagg
      841 tgtgaaaaat gtgaccacgc cttctgtcgg ttatcgggtc tccaagccca tcaggtgagg
      901 cacactggag agaagccata caagtgtgag gagtgtggca agggcttcac tcgggcctcc
      961 acccttctgg accatcagcg gggccacact ggaaacaagc cctatcagtg ccatgcttgc
     1021 tggaagagtt tctgtcacag ctcggagttt aacaatcaca taagagtcca cacgggagag
     1081 aaaccctatg tatgcgagga gtgtgggaaa ggcttcagcc aggcctccca tctcctggcc
     1141 catcagagag gccacactgg agagaaaccc tacaaatgta gcacgtgtgg gaagggcttc
     1201 agccggagtt cagatctcaa cgttcactgc agaatccaca cgggagagaa accctataag
     1261 tgtgagacgt gtgggaaagc ctttagtcgg gtctccatac tccaggtgca ccagagggtc
     1321 cacagtgaag acaaaccgta ccagtgcgca gagtgtggga ggggcttcac tgtagagtca
     1381 caccttcaag cgcaccagcg ctcccacacg ggagagagac cctatcaatg tgaggagtgc
     1441 gggcgaggct tctgtcgggc ctccaacttt ctggctcatc gtggagtcca cacaggcgag
     1501 aaaccgtatc gatgtgacat atgcggaaaa cgcttccggc agaggtccta cctccatgac
     1561 caccacagga tccacacggg agagaaacct tacaaatgtg aggagtgtgg gaaagtcttc
     1621 agttggagct catacctcaa ggcccaccag agagttcaca caggagagaa accatacaga
     1681 tgtgaggagt gtgggaaggg tttcagctgg agctcaagtc tcctaattca ccagcgcgcc
     1741 catgcagagg atgagggtcg caaggatttg cctgcatcag aaggctcaca ggggaaacaa
     1801 actctataat gttttatagt ttgatatttc aactggaagc tgaaaggtcc caactcttag
     1861 agttctcaag ggagttgtag tattagtatt ttgactggac caggatgcat tttgatgctt
     1921 gggagaccac aagcagagaa gccttgtaag ttggagccat gtagacttca gtcagaacct
     1981 tgacctttaa cacatggaga cagtaaccaa ccgggggaaa gttgagtgtg acctggaggt
     2041 atctcaaagg aaggaaccag atcactttct tatgttgctg gttgcaaccc cgtgtggggc
     2101 ttcattaccg taagtgacag tcacaagata tttaggaaca ctacaagctt tctgcatatc
     2161 cagggaccaa aacctcagaa ttcaacaggt tctaggagct tctggcagct cttacccatg
     2221 atgcaactgt gtgacttcac tgcagccttc ctcagaacac accatcacca cacacagggc
     2281 ccagcctctc tgctcagggt cggcgttgtt gtctatgaca aattgcatgg ctttctacag
     2341 tacacatgct ttctgttctt ccggaagcgt tgctcacgga gctttcctgt tctcggtctt
     2401 ctagttcagc tgcagactct gttgtgtgtc tcagtgggat tttgaccatc ctcattactc
     2461 ccctttacag aaagtgttcc acggcactac tgtgcaagtt aggttttgtg gttaataaat
     2521 taccacttac tgaaattgtt taaaatacat ttcttcccaa ttaatagtac atgtttgaat
     2581 tgtatatcta cattgcgtac ctatattcac aagcagtgcc taagacatca tatgccttca
     2641 gtaaactgtt aagccagcct
//
