LOCUS       NM_009567               3510 bp    mRNA    linear   ROD 02-JUN-2024
DEFINITION  Mus musculus zinc finger protein 93 (Zfp93), transcript variant 2,
            mRNA.
ACCESSION   NM_009567
VERSION     NM_009567.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3510)
  AUTHORS   Wiese,C.B., Ireland,S., Fleming,N.L., Yu,J., Valerius,M.T.,
            Georgas,K., Chiu,H.S., Brennan,J., Armstrong,J., Little,M.H.,
            McMahon,A.P. and Southard-Smith,E.M.
  TITLE     A genome-wide screen to identify transcription factors expressed in
            pelvic Ganglia of the lower urinary tract
  JOURNAL   Front Neurosci 6, 130 (2012)
   PUBMED   22988430
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3510)
  AUTHORS   Yokoyama,S., Ito,Y., Ueno-Kudoh,H., Shimizu,H., Uchibe,K.,
            Albini,S., Mitsuoka,K., Miyaki,S., Kiso,M., Nagai,A., Hikata,T.,
            Osada,T., Fukuda,N., Yamashita,S., Harada,D., Mezzano,V., Kasai,M.,
            Puri,P.L., Hayashizaki,Y., Okado,H., Hashimoto,M. and Asahara,H.
  TITLE     A systems approach reveals that the myogenesis genome network is
            regulated by the transcriptional repressor RP58
  JOURNAL   Dev Cell 17 (6), 836-848 (2009)
   PUBMED   20059953
REFERENCE   3  (bases 1 to 3510)
  AUTHORS   Shannon,M. and Stubbs,L.
  TITLE     Analysis of homologous XRCC1-linked zinc-finger gene families in
            human and mouse: evidence for orthologous genes
  JOURNAL   Genomics 49 (1), 112-121 (1998)
   PUBMED   9570955
REFERENCE   4  (bases 1 to 3510)
  AUTHORS   Stubbs,L., Carver,E.A., Shannon,M.E., Kim,J., Geisler,J.,
            Generoso,E.E., Stanford,B.G., Dunn,W.C., Mohrenweiser,H.,
            Zimmermann,W., Watt,S.M. and Ashworth,L.K.
  TITLE     Detailed comparative map of human chromosome 19q and related
            regions of the mouse genome
  JOURNAL   Genomics 35 (3), 499-508 (1996)
   PUBMED   8812484
REFERENCE   5  (bases 1 to 3510)
  AUTHORS   Shannon,M., Ashworth,L.K., Mucenski,M.L., Lamerdin,J.E.,
            Branscomb,E. and Stubbs,L.
  TITLE     Comparative analysis of a conserved zinc finger gene cluster on
            human chromosome 19q and mouse chromosome 7
  JOURNAL   Genomics 33 (1), 112-120 (1996)
   PUBMED   8617494
  REMARK    GeneRIF: Zfp93 zinc finger protein 93
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK132229.1.
            
            On Jan 18, 2007 this sequence version replaced NM_009567.3.
            
            Transcript Variant: This variant (2) differs in the 5' UTR and
            coding sequence compared to variant 1. The resulting isoform (2) is
            shorter at the N-terminus compared to isoform 1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK132229.1, SRR1660811.83105.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-3510              AK132229.1         2-3511
FEATURES             Location/Qualifiers
     source          1..3510
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="7"
                     /map="7 10.27 cM"
     gene            1..3510
                     /gene="Zfp93"
                     /gene_synonym="Znf235"
                     /note="zinc finger protein 93"
                     /db_xref="GeneID:22755"
                     /db_xref="MGI:MGI:107611"
     exon            1..264
                     /gene="Zfp93"
                     /gene_synonym="Znf235"
                     /inference="alignment:Splign:2.1.0"
     exon            265..322
                     /gene="Zfp93"
                     /gene_synonym="Znf235"
                     /inference="alignment:Splign:2.1.0"
     CDS             308..2245
                     /gene="Zfp93"
                     /gene_synonym="Znf235"
                     /note="isoform 2 is encoded by transcript variant 2; zinc
                     finger protein 235; zfp-93"
                     /codon_start=1
                     /product="zinc finger protein 235 isoform 2"
                     /protein_id="NP_033593.1"
                     /db_xref="CCDS:CCDS39828.1"
                     /db_xref="GeneID:22755"
                     /db_xref="MGI:MGI:107611"
                     /translation="MTKLQEMVTFRDVAVVFSEEELGLLDAAQRKLYHDVMLENFRNL
                     LAVGCQSPNKMAPLDTTGIRCLPLGQLPCWQMTSHDVNKLARAPEDGINTPGKGPHLL
                     EQCHSSCHWGAEQPSQAPEDDGCLENLPSNHSSSSDNQEFLSGRAQSSWSKAHFSERW
                     NHEKHCPQTLVKTKSQLLAPGVNILGCISHHDHNILHKRDKVPSSGDCDQVIFPMTLL
                     TQHCVYREQKAYQCSRGQEVFSDSPSLELHQQTLLGKKSPVHSTHKDTRHSPSVPIQP
                     SVHPGRKRYWCHECGKGFRQSSALQTHQRVHTGEKPYRCDSCGKGFSRSSDLNIHRRV
                     HTGEKPYKCEVCGKGFTQWAHLQAHERIHTGEKPYKCGDCGKRFSCSSNLHTHQRVHT
                     EEKPYECNECGKRFSLSGNLDIHQRVHTGEKPYKCEECGKGFSSASSFQSHQRVHTGE
                     KPFHCSVCGKNFSRSSHFLDHQRIHTGEKPYRCEVCGKRFPWSLSLHSHQSVHTGKKP
                     YKCGECGKGFSHASSLQAHHSVHTGEKPFKCNVCQKQFSKTSNLQAHQRVHTGEKPYK
                     CDTCGKAFSQKSSLQVHQRIHTGEKPFKCEECGKEFRWSVGLSSHQRVHTGEKPYTCQ
                     QCGKGFSQASYFHMHQRVHTI"
     exon            323..449
                     /gene="Zfp93"
                     /gene_synonym="Znf235"
                     /inference="alignment:Splign:2.1.0"
     exon            450..3510
                     /gene="Zfp93"
                     /gene_synonym="Znf235"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2516..2521
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Zfp93"
                     /gene_synonym="Znf235"
                     /note="hexamer: AATAAA"
     regulatory      2525..2530
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Zfp93"
                     /gene_synonym="Znf235"
                     /note="hexamer: ATTAAA"
     polyA_site      2534
                     /gene="Zfp93"
                     /gene_synonym="Znf235"
                     /note="major polyA site"
     polyA_site      2543
                     /gene="Zfp93"
                     /gene_synonym="Znf235"
     regulatory      2652..2657
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Zfp93"
                     /gene_synonym="Znf235"
                     /note="hexamer: AATAAA"
     polyA_site      2669
                     /gene="Zfp93"
                     /gene_synonym="Znf235"
ORIGIN      
        1 gcttcctgtg aggtgaaaac ctgggccatc gctctgcatt tcctttgcgc ctgtgctcct
       61 gatgtatccc ctcagtgacc gcatctgcgg cccaggaaca agcccggcat ccaggtcctc
      121 tctcgctggg ctctgcctga ggcggggctg ccctacactg acacacctca gccccttgca
      181 gagccccagg agaggctagc ttcccagggg agcctggcag gggagctatg atgagagatg
      241 gcccatgtcc tgaatcctta agtgcttgct tcccagagcc ctgccttgtc tcaaagagaa
      301 gagaacaatg accaagttac aggagatggt gaccttcagg gatgtggctg ttgtcttcag
      361 cgaggaggag ctggggctgc tggacgctgc tcagaggaag ctgtaccacg atgtgatgct
      421 ggagaacttc aggaacctcc tggcagtggg atgccagagt ccaaataaga tggcgcctct
      481 tgacacaaca ggaataaggt gccttccatt ggggcagctt ccatgttggc aaatgaccag
      541 ccatgatgtc aacaaactag ccagagctcc agaagatgga ataaacactc caggaaaggg
      601 tcctcacctc ctggagcagt gccactcctc ctgccactgg ggagcagagc agccttctca
      661 ggcccccgag gatgacggct gtctggagaa tctcccaagc aatcattcca gcagtagtga
      721 caatcaggaa tttctctctg ggagggctca gagttcttgg agtaaggcac actttagtga
      781 gagatggaac catgagaaac actgtcctca gactctggtg aaaacgaagt ctcagctgtt
      841 ggctccaggt gttaacattc tgggttgcat ttcccaccac gatcacaata tactgcataa
      901 aagagataaa gtccccagca gcggtgactg tgatcaagtc atttttccca tgacgctcct
      961 cacccagcat tgtgtttata gagaacagaa ggcctaccag tgcagcaggg gccaagaagt
     1021 cttcagtgac agccctagtc tggaacttca tcaacagacc ctcttaggaa agaagtcccc
     1081 tgtgcatagt actcacaagg acaccaggca tagccccagt gtccccattc aaccaagtgt
     1141 tcatccagga agaaagcgct actggtgtca tgagtgtggc aaaggtttcc gtcagagctc
     1201 agcacttcag actcaccaga gagtgcacac aggggagaag ccctacaggt gcgacagctg
     1261 tgggaagggc ttcagccgca gctcggatct caacatccac cgccgagtgc acactggaga
     1321 gaaaccttac aagtgtgagg tgtgtgggaa gggcttcaca cagtgggcac acctccaggc
     1381 ccacgagaga attcacacag gagagaagcc atataagtgt ggagactgtg gcaagcgctt
     1441 cagctgtagc tcgaacctcc acacccacca gagagtccac actgaggaga aaccttatga
     1501 gtgtaatgag tgtgggaagc gcttcagctt aagtggcaac ctagacatcc atcagcgggt
     1561 ccacacagga gagaagccat ataaatgtga agagtgtggg aagggtttca gttcagcctc
     1621 aagcttccaa agccaccaga gggtccatac cggagagaag ccatttcact gcagtgtctg
     1681 tgggaagaac ttcagtcgga gctcacattt tctagatcac caaagaattc acactgggga
     1741 aaaaccgtat agatgtgaag tgtgtgggaa gcgcttcccc tggagcttga gccttcatag
     1801 tcaccagagt gtgcacacag gaaagaaacc gtataaatgt ggggagtgtg ggaaaggctt
     1861 cagtcatgcc tccagtctgc aggcccatca cagtgtccac accggtgaaa aaccattcaa
     1921 atgcaatgtt tgccagaagc agttcagcaa gacctcaaac ctccaggccc accagagggt
     1981 tcacacaggg gagaagccct acaaatgcga cacgtgtggg aaagccttca gccagaagtc
     2041 cagtctccaa gtccatcaga gaattcacac tggggagaag ccgttcaagt gtgaggagtg
     2101 tgggaaggaa ttcagatgga gcgtggggct gagttctcac cagagggtcc acacaggaga
     2161 gaaaccctac acgtgtcagc agtgtgggaa aggtttcagt caggcctcat atttccatat
     2221 gcaccagagg gtccacacta tatagagacc ttaaatcggc catatttgct gtaggggcta
     2281 tagtcagaga tcacatcttg tcttccacca gagaatccac actgcatgga atctttagtt
     2341 tctgctgtca ggtgggctct tggctgatga ttgttaaaag tatccccaac acgcagagtc
     2401 ttcaggagac ttcataggag ctttattttg gtatttttgc cctcaactta ttctcctact
     2461 gtactcatta tgcaaaggga agagagtatt ttagaatgga tcttcttagc atataaataa
     2521 aagaattaaa cgtatataga aaaggattct gatttaatta taaaaggaaa cattggcaat
     2581 tgtgaggaac aggcccaaca ggaattgtag ggcatcatac taatgctgat attatatcat
     2641 tatgggtaat caataaagat tggcaaagag cttgtagcaa ctgataggag aatttaacaa
     2701 ctatcctaaa accaaatgac ttcagtttat acaaagtaat tggattcacc ccatattgta
     2761 aagagaacat caattcctgg agcccttaca ttttatacta atgtcaataa gttggaaatg
     2821 gctagttata attcagaaaa aacataatca aagtcattca aagtccatat gttttgggtt
     2881 ttttttttcc agttcaaaaa tcagagttct atgacattct taaggaatta ttagattttc
     2941 ttgaatcttt tcatgtagtt actgcccgca atatgcaaaa aatgtttcgg atatagaaac
     3001 tactgaactt actcagtatg accaaaatta acttcactgt ttattcaact acaaaaatta
     3061 attataggga aatcatccat tgtatataac atgtcagatt ccacaagata atgatgaaat
     3121 tgttcacctg ttgatgggaa atgtgctaga aacctcaaat tttcataaga aacaccataa
     3181 taagactaaa ggtattgagg gggatttttc tatcacttgg caacaagcca aagaaattat
     3241 aagaaaatgt cctatttgtc ctttatataa ccaaactcca ttacctgcag ggagtaaccc
     3301 aaaaagtatc caaagaaatt aaatttggca aatgaatatg tttcattttg cagaattagg
     3361 aaaattaacg tatgtgtacc ataccatact caggatttca ataggcagtt gctttaagtt
     3421 ctaaaaactt gattctataa ttgcacattt atttgacatt gtggcaatta tgagaatacc
     3481 tgggcagatt aaaaatgtta tcattcttgg
//
