LOCUS       NM_009566               5783 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus zinc finger protein 92 (Zfp92), transcript variant 1,
            mRNA.
ACCESSION   NM_009566
VERSION     NM_009566.5
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 5783)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 5783)
  AUTHORS   Osipovich,A.B., Dudek,K.D., Trinh,L.T., Kim,L.H., Shrestha,S.,
            Cartailler,J.P. and Magnuson,M.A.
  TITLE     ZFP92, a KRAB domain zinc finger protein enriched in pancreatic
            islets, binds to B1/Alu SINE transposable elements and regulates
            retroelements and genes
  JOURNAL   PLoS Genet 19 (5), e1010729 (2023)
   PUBMED   37155670
  REMARK    GeneRIF: ZFP92, a KRAB domain zinc finger protein enriched in
            pancreatic islets, binds to B1/Alu SINE transposable elements and
            regulates retroelements and genes.
            Publication Status: Online-Only
REFERENCE   3  (bases 1 to 5783)
  AUTHORS   Osipovich,A.B., Dudek,K.D., Greenfest-Allen,E., Cartailler,J.P.,
            Manduchi,E., Potter Case,L., Choi,E., Chapman,A.G., Clayton,H.W.,
            Gu,G., Stoeckert,C.J. Jr. and Magnuson,M.A.
  TITLE     A developmental lineage-based gene co-expression network for mouse
            pancreatic beta-cells reveals a role for Zfp800 in pancreas
            development
  JOURNAL   Development 148 (6) (2021)
   PUBMED   33653874
  REMARK    Publication Status: Online-Only
REFERENCE   4  (bases 1 to 5783)
  AUTHORS   Raefski,A.S. and O'Neill,M.J.
  TITLE     Identification of a cluster of X-linked imprinted genes in mice
  JOURNAL   Nat Genet 37 (6), 620-624 (2005)
   PUBMED   15908953
REFERENCE   5  (bases 1 to 5783)
  AUTHORS   Davies,W., Isles,A., Smith,R., Karunadasa,D., Burrmann,D.,
            Humby,T., Ojarikre,O., Biggin,C., Skuse,D., Burgoyne,P. and
            Wilkinson,L.
  TITLE     Xlr3b is a new imprinted candidate for X-linked parent-of-origin
            effects on cognitive function in mice
  JOURNAL   Nat Genet 37 (6), 625-629 (2005)
   PUBMED   15908950
REFERENCE   6  (bases 1 to 5783)
  AUTHORS   Mallon,A.M., Platzer,M., Bate,R., Gloeckner,G., Botcherby,M.R.,
            Nordsiek,G., Strivens,M.A., Kioschis,P., Dangel,A., Cunningham,D.,
            Straw,R.N., Weston,P., Gilbert,M., Fernando,S., Goodall,K.,
            Hunter,G., Greystrong,J.S., Clarke,D., Kimberley,C., Goerdes,M.,
            Blechschmidt,K., Rump,A., Hinzmann,B., Mundy,C.R., Miller,W.,
            Poustka,A., Herman,G.E., Rhodes,M., Denny,P., Rosenthal,A. and
            Brown,S.D.
  TITLE     Comparative genome sequence analysis of the Bpa/Str region in mouse
            and Man
  JOURNAL   Genome Res 10 (6), 758-775 (2000)
   PUBMED   10854409
REFERENCE   7  (bases 1 to 5783)
  AUTHORS   Levin,M.L., Chatterjee,A., Pragliola,A., Worley,K.C., Wehnert,M.,
            Zhuchenko,O., Smith,R.F., Lee,C.C. and Herman,G.E.
  TITLE     A comparative transcription map of the murine bare patches (Bpa)
            and striated (Str) critical regions and human Xq28
  JOURNAL   Genome Res 6 (6), 465-477 (1996)
   PUBMED   8828036
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL732461.23, AK141522.1 and AW494753.1.
            
            On Jul 15, 2015 this sequence version replaced NM_009566.4.
            
            Transcript Variant: This variant (1) represents the longer
            transcript and encodes the longer protein (isoform 1).
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK141522.1, U47104.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164131, SAMN01164132
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-7                 AL732461.23        141739-141745
            8-4006              AK141522.1         2-4000
            4007-4007           AL732461.23        155881-155881
            4008-5756           AK141522.1         4002-5750
            5757-5783           AW494753.1         1-27                c
FEATURES             Location/Qualifiers
     source          1..5783
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="X"
                     /map="X 37.31 cM"
     gene            1..5783
                     /gene="Zfp92"
                     /note="zinc finger protein 92"
                     /db_xref="GeneID:22754"
                     /db_xref="MGI:MGI:108094"
     exon            1..95
                     /gene="Zfp92"
                     /inference="alignment:Splign:2.1.0"
     exon            96..138
                     /gene="Zfp92"
                     /inference="alignment:Splign:2.1.0"
     exon            139..204
                     /gene="Zfp92"
                     /inference="alignment:Splign:2.1.0"
     CDS             172..1638
                     /gene="Zfp92"
                     /note="isoform 1 is encoded by transcript variant 1;
                     zfp-92"
                     /codon_start=1
                     /product="zinc finger protein 92 isoform 1"
                     /protein_id="NP_033592.2"
                     /db_xref="CCDS:CCDS30200.1"
                     /db_xref="GeneID:22754"
                     /db_xref="MGI:MGI:108094"
                     /translation="MAATLLRAKPKVTVSFEDVSVYFTKTEWRLLDLKQRTLYKQVML
                     ENYSHLVSVGFAFSKPNLVSQLERGEKPWIRDDGMESAARSCAGNRIKTKTLTSKPKL
                     FGRGLLRNTSRSSLQRRPHDFRPNPIVRYQHSRIADKRYLCQQCGKSFSRSFNLIKHR
                     IIHSREKPYECSECGKQFQRSLALLEHQRIHSGDKPYECGECGKTFTRSSNLVKHQVI
                     HSSEMPFVCRMCGKVFRRSFALLEHTRIHSGERPFECTECGKAFSRSSNLIEHQRIHS
                     GQKPYICKECGKAFKGVSQLIHHQLIHRGDKPFTCHEYGKAFRGLSGLSQHQRVHRGE
                     KPYECSECGRAFGRRANLFKHQVVHGGVRLQHRTRGKGFQRKLLEHLRDLHGQQPQEA
                     GEGSSAEPQPIDTNEKPQVCERCGQVFENKLLLCRHLRIHDDEDDKKQKPVISSTSVL
                     EDKSLLSQHLEAQPTEESDSEGSVVFVYAEKPHGPSSP"
     exon            205..331
                     /gene="Zfp92"
                     /inference="alignment:Splign:2.1.0"
     exon            332..433
                     /gene="Zfp92"
                     /inference="alignment:Splign:2.1.0"
     exon            434..5767
                     /gene="Zfp92"
                     /inference="alignment:Splign:2.1.0"
     regulatory      5729..5734
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Zfp92"
                     /note="hexamer: AATAAA"
     polyA_site      5759
                     /gene="Zfp92"
                     /note="major polyA site"
ORIGIN      
        1 ccgccccagc cacgcctgct cactcaccct gctccttagc agcagcagag gacctggcca
       61 aaggtctcta cgcaggacga acctcgtgaa caaagaccag gggctggcac aagagcattg
      121 cacagctgat ctgcccagcc tttcagctgt gctgtggttg gagccctgac tatggcagcc
      181 actcttctaa gggcaaagcc caaggtgaca gtgtcttttg aagatgtgtc tgtgtacttt
      241 acaaagacag aatggaggct tctggacctc aaacagagga ccctctacaa gcaagtgatg
      301 ctggagaact acagccatct ggtgtcagta ggatttgctt tctccaagcc taacctggta
      361 tcccagctgg agcgagggga gaagccctgg attagagatg atggaatgga gagtgcagca
      421 agatcctgtg ctgggaatag gataaagacc aagactttga cttcaaaacc aaaacttttc
      481 ggaagaggtc tcctcagaaa tacctcacga tcctcattgc agagacgtcc tcacgatttc
      541 aggccaaatc ccattgtaag gtaccaacac tccagaatcg cggataagcg atatctatgt
      601 cagcagtgtg gaaaatcctt cagccgcagc ttcaatctca tcaaacaccg gattatccac
      661 agcagagaga aaccttatga gtgcagcgag tgtgggaagc agttccagcg cagcttagcg
      721 ctgctggagc atcagcgcat ccacagcggc gacaagccct atgaatgtgg cgagtgtggc
      781 aaaaccttca cgcgcagctc caacctcgtc aagcaccagg tcatccacag cagtgagatg
      841 ccatttgtgt gccgcatgtg tggtaaagtg ttcaggcgca gcttcgcgct gcttgagcac
      901 acgcgcatcc acagcggcga gcggcccttc gagtgcaccg agtgcggcaa ggcattcagc
      961 cgaagctcca atctcataga gcatcagcgc atccacagtg gccagaagcc ctacatctgc
     1021 aaggagtgcg ggaaggcctt caagggcgtc tcgcagctca tccaccacca gctcatccac
     1081 cgcggcgaca agcccttcac gtgccatgag tatggcaagg ccttccgagg cctctcaggg
     1141 ctcagccaac accagcgggt ccacagaggt gagaaaccct atgagtgcag cgaatgcggc
     1201 cgggcctttg gtcgccgggc caacctcttc aagcaccagg tggtgcatgg tggggtgcgg
     1261 ctccagcacc gcactcgagg gaagggattc cagcgcaagc tcctggagca tctgcgggac
     1321 ctccatgggc agcagcccca agaggctgga gaaggtagct ccgcagaacc ccagcccatc
     1381 gacaccaatg agaagcccca agtttgtgag cgctgcggcc aggtcttcga gaacaagttg
     1441 ctgttgtgtc gccacttgcg catccatgac gacgaagatg acaagaaaca gaagcctgtt
     1501 atttcgagca cctcagtttt ggaggataag tcattgctca gccaacatct ggaagcccag
     1561 cccacagagg aaagcgacag cgaaggcagt gtagttttcg tgtatgctga gaagccccac
     1621 ggtccatcct caccttgagg ccagaaacag ggcagcagtt cagaatggca ggatggcccc
     1681 ttccccagtg tgaaacagag aagcaattca gaatgacaga gtgccctcca ccttcagtgt
     1741 agtttgtcct gctccttccc tgataggtcg aaaaggaaag ctccctccgt agtcctggat
     1801 gatacaattg atgcctagag attgtacagg caggctcctc aagttaccta ggcagggttc
     1861 tcctgtgtgt gcttcggtgt gtgagtgcct gtgtgagtgg ggtctccaag tgagcagatt
     1921 tgttttatac agagttggtc ttttccatcc acatgggaat tgcctgatgt agttagaagg
     1981 gaagcaggta ggtccagccg actctaggca cagttaccat gaagtttaca gacagatgac
     2041 ccatgtcctt tcccttgttt aatgtggggt ggtttcctcc ccttgagagt tgtgtttcta
     2101 gggaaaatat actaaagcta ctttattcca ttaaaagttt ataaattgaa ggagctctaa
     2161 aattgacttg atgctttata ggaaagcaca gggaacctgc tgtcctgggg cgcaggctag
     2221 gctatatgtg aaaacttgga ccctattatg tacccctgct gctgcttgga gggtctgtac
     2281 caaagctgtc atcttgcaga gaggttaaag tccagagacc tgagggtctc cattttggga
     2341 aaggagcctc tttcctctgg tgcctcatag aagaagggcg taggtaagac atggcctctt
     2401 tgtgccactc ctatccactg tctcaatacc tacagtttct ctgctaatcc ctttcatgga
     2461 acccattgtg tgctgataac aggttaggag tttgcactta gatggcccca gaaatgagtc
     2521 tggccagaca attacctttc agacagatga catttgttag aatattaaag ttgccattat
     2581 tttaatatgc ttttgtttgc aggtaaaagt tgggaaatgg agatctttgt tatatgagag
     2641 tgttggggaa ttgatccttt ataaaaattc ctcaggcaga gggtgtagct cagaggtgga
     2701 gtacatgcct agcagacctc gggccctgtg ttccatccct gactcctgcc caagctcaga
     2761 caggagaaag tagcctttcc agcccatgac tggtgagtat ggtggcaagt ctggccctcc
     2821 aagtgatatc actcacacac acacatacac acacacatac acacacacac acacaaatac
     2881 acacaaacac acatacacac acacacacac acacacacac acacacgtct taagcctggt
     2941 tgactttaat tagaactaag gggaaggtgt tttataagaa aatctgtagc agttctattc
     3001 tgcctgtgca gaaaccctgg agatttgtcc cttggtatac tcagctcagc atcctgggca
     3061 gcaagctact ttccagtcct ctcatatccc aggagggaga aagattttct cacaaagctg
     3121 cctgagggca ggtggggggt acgggtaaag tggaggctgc ccttgggcac tccaagaaga
     3181 gtgatggtac cttccctgca aggttagtga ggttcaaaga caactgcctc ctgccaagag
     3241 agtatgggaa gacctggaaa cttgggatgc tggttggggc cctggtcaca gaataacttc
     3301 agatattctt acacaaatat gcacacacac acacacacac acacacacac acacacacac
     3361 acacacacac gttttatgta tataaaatgt tttgtgtaaa gttctagttt atagcttgct
     3421 cttatctcca tgtcctccag acttgtcctg tgattgcttt ctttctcatg agcctgcagt
     3481 tgtatgttgt gctcagcctt gtgtctccac tccaagtccc atgttggata ctagtgaaag
     3541 agccttgctc tcttagtgta ctggacttgg gctatgtagt agttggcttc agtggctcct
     3601 ggacgcagtc caaagtatct gctaccttgg tttcccacta gaaaatgaaa tactaagaac
     3661 agtgtctttt aattccctgg tgaagtaact gctcagacag tctctcctag ggctggcaca
     3721 gatacaggaa actaggcctc atgcagtgca ggtacccaca gtgggaggtc ctgtgcagac
     3781 tgtcatgtgt tcttaaataa tcatttccat ggctctagga agggaatgca tgatacctat
     3841 cctgtaagcc tgtcaccagc ttctataccc aaagataaat ctccagagaa ggggtcatgt
     3901 gtagttattt tcagcagaaa gtggggtctg cagggagaga tgtagagcac tttagagtgg
     3961 agtaccctga aatgctccag agtccccagt ggttgctaca tacctagcaa cacatctcag
     4021 ttttctactg tagttccggt tcctagatgt tttcagcagg cagttaggtg tagtaggttc
     4081 tctcaggtat ggtaatcagg tatgtaaaat gaacgaacaa gcttctcctg ggataaagtc
     4141 aaaataacca gaggcgcttg tgctttccct tgttttgtgc ctgaaaattg gtccattcct
     4201 tatgctagat ggggaatggg gctaatggtt catttgtgtg tcttgagtgg caactagatt
     4261 ataaacgctt aaactatcaa aaactcctgc tgttttctag tccctccttt ttctgtcttc
     4321 cctccatact ttaccttcag accatttgcc ttttaagact ttgggtgctt ttcaggtgct
     4381 gtgtgaatac cctggcattg tctccaggaa actgacagat ggtcctttct gaatttatca
     4441 tgaggtggaa gttttcaaca tttttgttgg ttgaaaaaaa aaaaaacatc tacttggaaa
     4501 gagtttccca tgtgtggaga gggactgctt ccaggattaa acagagaggt agtgggttca
     4561 aagtcagaag caagagtcaa ctctgagcta gcaagagcct acagtgaggc taggcttatg
     4621 gggaaggggt tgtttgccat atgggagggc ctgccttagt ctgcccaggg tgcaggcttc
     4681 tcacagggct caatactgca actgcgagat caggcctgtg caaaaggctc ctaaacagaa
     4741 aactccatga agaggaacca ctatgcctat cttctgttct gggtttgttt atttgtttgt
     4801 ttgtttttgt tttgtgctac caagtttcag gcagcatgga agcacccacc cttacagctt
     4861 tccaaaaagg aagtaaaata tagggacttc aggtttgggg gtggaggtgt tgctgaaaag
     4921 tgccttggtt gggagtgaag aggatatagt gtattgggga agcccagaat gcacacaggt
     4981 ttctctaggg caagagtctt agagggccat tgtttcatga aaccacagat gaattgagtc
     5041 taggggaaag catggttttc tttggaggtg ttattttaag cctgtgtgac caggctggcc
     5101 tttgactctt aattctcctg cctctacctc ctaagtgctg gaattacagg gttgggccac
     5161 catgcctggg ttctgaagag tcttacgttc ttatgttgaa agtaatatca gttcaagccc
     5221 ttgcacattt atgagagaaa tggtgcctcc ttttgtgttc agtagggcta agcctggtcc
     5281 ctctccacca cctaagaatg atgagagcag aaatgaagga ctactgtgca tctggaggct
     5341 agtgatacat taacgttctt tggcagattg atggggggta taggttatac agcttaaagt
     5401 gtacaagtgt ggatgagttg tgatgggtgt ctgtgccctt aatatcatcc ccactgttaa
     5461 gtccatgaac attcagcatc ttaggcagta actcctcctt tcttctcctc cctatcccat
     5521 ccttacaact actgcttttt atcactagtg attaatttct gtataaatgg acttccacag
     5581 tgtgtgtctg gcctcttagt gacattttta gatgtttccg agtgttggtg tgtatatcct
     5641 cacttcatat atatcccagt gtataaatgg cctccaatac ctgttgatgc ctgttaatta
     5701 atatttatat tctttccagt ttgagacaaa taaagctgct atgagtattt gtatgcacat
     5761 cccagcaaaa aaaaaaaaaa aaa
//
