LOCUS       NM_011763               3921 bp    mRNA    linear   ROD 04-AUG-2023
DEFINITION  Mus musculus zinc finger protein 9 (Zfp9), mRNA.
ACCESSION   NM_011763
VERSION     NM_011763.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3921)
  AUTHORS   Woods L, Perez-Garcia V, Kieckbusch J, Wang X, DeMayo F, Colucci F
            and Hemberger M.
  TITLE     Decidualisation and placentation defects are a major cause of
            age-related reproductive decline
  JOURNAL   Nat Commun 8 (1), 352 (2017)
   PUBMED   28874785
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3921)
  AUTHORS   Wiese CB, Ireland S, Fleming NL, Yu J, Valerius MT, Georgas K, Chiu
            HS, Brennan J, Armstrong J, Little MH, McMahon AP and
            Southard-Smith EM.
  TITLE     A genome-wide screen to identify transcription factors expressed in
            pelvic Ganglia of the lower urinary tract
  JOURNAL   Front Neurosci 6, 130 (2012)
   PUBMED   22988430
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 3921)
  AUTHORS   Fairbridge NA, Dawe CE, Niri FH, Kooistra MK, King-Jones K and
            McDermid HE.
  TITLE     Cecr2 mutations causing exencephaly trigger misregulation of
            mesenchymal/ectodermal transcription factors
  JOURNAL   Birth Defects Res A Clin Mol Teratol 88 (8), 619-625 (2010)
   PUBMED   20589882
REFERENCE   4  (bases 1 to 3921)
  AUTHORS   Guo G, Huss M, Tong GQ, Wang C, Li Sun L, Clarke ND and Robson P.
  TITLE     Resolution of cell fate decisions revealed by single-cell gene
            expression analysis from zygote to blastocyst
  JOURNAL   Dev Cell 18 (4), 675-685 (2010)
   PUBMED   20412781
REFERENCE   5  (bases 1 to 3921)
  AUTHORS   Yokoyama S, Ito Y, Ueno-Kudoh H, Shimizu H, Uchibe K, Albini S,
            Mitsuoka K, Miyaki S, Kiso M, Nagai A, Hikata T, Osada T, Fukuda N,
            Yamashita S, Harada D, Mezzano V, Kasai M, Puri PL, Hayashizaki Y,
            Okado H, Hashimoto M and Asahara H.
  TITLE     A systems approach reveals that the myogenesis genome network is
            regulated by the transcriptional repressor RP58
  JOURNAL   Dev Cell 17 (6), 836-848 (2009)
   PUBMED   20059953
REFERENCE   6  (bases 1 to 3921)
  AUTHORS   Sultana DA, Tomita S, Hamada M, Iwanaga Y, Kitahama Y, Khang NV,
            Hirai S, Ohigashi I, Nitta S, Amagai T, Takahashi S and Takahama Y.
  TITLE     Gene expression profile of the third pharyngeal pouch reveals role
            of mesenchymal MafB in embryonic thymus development
  JOURNAL   Blood 113 (13), 2976-2987 (2009)
   PUBMED   19164599
REFERENCE   7  (bases 1 to 3921)
  AUTHORS   Bulfone A, Carotenuto P, Faedo A, Aglio V, Garzia L, Bello AM,
            Basile A, Andre A, Cocchia M, Guardiola O, Ballabio A, Rubenstein
            JL and Zollo M.
  TITLE     Telencephalic embryonic subtractive sequences: a unique collection
            of neurodevelopmental genes
  JOURNAL   J Neurosci 25 (33), 7586-7600 (2005)
   PUBMED   16107646
REFERENCE   8  (bases 1 to 3921)
  AUTHORS   Agata Y, Matsuda E and Shimizu A.
  TITLE     Rapid and efficient cloning of cDNAs encoding Kruppel-like zinc
            finger proteins by degenerate PCR
  JOURNAL   Gene 213 (1-2), 55-64 (1998)
   PUBMED   9630514
REFERENCE   9  (bases 1 to 3921)
  AUTHORS   Chavrier P, Lemaire P, Revelant O, Bravo R and Charnay P.
  TITLE     Characterization of a mouse multigene family that encodes zinc
            finger structures
  JOURNAL   Mol Cell Biol 8 (3), 1319-1326 (1988)
   PUBMED   2452975
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC140192.3, BY132524.1 and AK029052.1.
            
            On Jan 20, 2007 this sequence version replaced NM_011763.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK029052.1, SRR1660821.54500.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164131, SAMN01164134
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-16                AC140192.3         126675-126690       c
            17-295              BY132524.1         2-280
            296-2393            AK029052.1         282-2379
            2394-3921           AC140192.3         109367-110894       c
FEATURES             Location/Qualifiers
     source          1..3921
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="6"
                     /map="6 55.86 cM"
     gene            1..3921
                     /gene="Zfp9"
                     /gene_synonym="1810048F22Rik; Krox-4; mszf79-2; Zfp-9"
                     /note="zinc finger protein 9"
                     /db_xref="GeneID:22750"
                     /db_xref="MGI:MGI:99210"
     exon            1..68
                     /gene="Zfp9"
                     /gene_synonym="1810048F22Rik; Krox-4; mszf79-2; Zfp-9"
                     /inference="alignment:Splign:2.1.0"
     exon            69..186
                     /gene="Zfp9"
                     /gene_synonym="1810048F22Rik; Krox-4; mszf79-2; Zfp-9"
                     /inference="alignment:Splign:2.1.0"
     CDS             172..1536
                     /gene="Zfp9"
                     /gene_synonym="1810048F22Rik; Krox-4; mszf79-2; Zfp-9"
                     /codon_start=1
                     /product="zinc finger protein 25"
                     /protein_id="NP_035893.1"
                     /db_xref="CCDS:CCDS51885.1"
                     /db_xref="GeneID:22750"
                     /db_xref="MGI:MGI:99210"
                     /translation="MTKYKGPVTLRDVAVEFSKAEWKLLTPAQKSLYKNVMLETFSNL
                     FSVGYRVVKPSVIAKLKKGKEPWPLEEFFRKSRGDKRRTAHDPRAKHQEQQAGNARKG
                     ELTKHQKTPTRHESYDCSECGKSFCQKSSLLAHQETHTKKSYKCEKCGQAFYKNEDLT
                     IHQKVHTRDKTYPCKECNKIFYHLSSLTRHLRIHAGEKPYECSQCDKSFYQKPHLTEH
                     QKTHTGEKPFECKECGKFFYVKAYLLVHQKTHTGEKPFQCKECGKFFSQKSHLTVHQR
                     THTGEKPYKCKECGKLFSRNSHLKTHQRTHTGEKPYKCKECGNCFYQKSALTVHQRTH
                     TGEKPFECSKCGKHFYYKSDLTKHERKHTGEKPYECAECGKSFSVNSVLRLHERTHTG
                     EKPYECEICGKSFSQKSHFVIHQRKHTGEKPYECQECGEGFIQKSQLTSHQKTHSKKG
                     KANK"
     exon            187..313
                     /gene="Zfp9"
                     /gene_synonym="1810048F22Rik; Krox-4; mszf79-2; Zfp-9"
                     /inference="alignment:Splign:2.1.0"
     exon            314..406
                     /gene="Zfp9"
                     /gene_synonym="1810048F22Rik; Krox-4; mszf79-2; Zfp-9"
                     /inference="alignment:Splign:2.1.0"
     exon            407..470
                     /gene="Zfp9"
                     /gene_synonym="1810048F22Rik; Krox-4; mszf79-2; Zfp-9"
                     /inference="alignment:Splign:2.1.0"
     exon            471..3921
                     /gene="Zfp9"
                     /gene_synonym="1810048F22Rik; Krox-4; mszf79-2; Zfp-9"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gccacgtcgg cgtcctcccg cttctcagcc atccccgggc atctgcagcg gaggccgctg
       61 tcaccgagga gacctggagc tgtggcctat gatttcctag gacttcactc tcccaacttt
      121 agagggtaga acaccaccac tccccatccc cgctctaaaa cactgcagaa aatgaccaag
      181 tacaagggac ccgtgacatt aagggatgtt gctgtggaat tctccaaagc agaatggaag
      241 ctcctgaccc ctgctcagaa gtccctttac aaaaatgtaa tgctggagac cttcagtaac
      301 ctgttctctg tgggttatcg tgtggttaag ccaagtgtga ttgcaaagtt gaagaaagga
      361 aaagagccat ggccattaga agaatttttc cgtaagagcc gtggtgataa gcggcggacc
      421 gctcacgacc ccagagccaa acatcaggag caacaggctg gaaatgcaag gaaaggagaa
      481 cttacaaagc atcagaaaac tcccacccgg catgaaagct acgactgtag cgaatgtgga
      541 aaatctttct gccagaagtc ttccctactg gcgcaccagg aaacacacac caagaagtcc
      601 tataaatgtg agaaatgtgg acaagctttc tataagaacg aagacctcac aatccatcag
      661 aaagtccata ccagagataa aacataccca tgtaaagaat gtaacaaaat tttctatcac
      721 ctgtcgtctc tcactagaca tctgaggatc cacgctgggg agaaacccta cgaatgtagc
      781 cagtgtgata aatccttcta tcagaagcca cacctcacag agcaccagaa aacacacaca
      841 ggggagaagc catttgagtg taaggagtgt gggaagttct tctatgtgaa ggcatacctc
      901 ctggtgcacc agaaaacaca cacaggcgag aagccttttc agtgtaagga atgtgggaag
      961 ttcttttcac aaaaatcaca cctcacagta catcagagaa cacacacagg ggagaaaccc
     1021 tacaaatgta aggagtgcgg gaaactcttc tctaggaatt cacacctcaa aacccatcag
     1081 agaacccaca caggggagaa accctacaaa tgtaaggagt gcggaaactg cttctaccag
     1141 aagtcagccc tcaccgtgca ccagcgaact cacaccgggg agaaaccttt cgaatgcagt
     1201 aagtgtggga aacactttta ctataagtca gatctcacca aacacgagag aaagcataca
     1261 ggggagaagc cgtacgaatg tgcagagtgt ggcaaatctt tctctgtgaa ctcagtcctt
     1321 agattacacg aaaggactca cacgggagag aagccatacg agtgtgagat atgtgggaag
     1381 tccttctctc agaagtccca ttttgtcatc catcagagaa aacacacagg ggagaagccc
     1441 tatgagtgcc aggagtgtgg ggaaggcttt atccagaagt cacaactcac atcacatcag
     1501 aagacacact ccaagaaggg aaaggctaac aagtagcgca agttcagaac ccctgcagga
     1561 attcaccctt tggctgtaat acacacagag ggagaacctt ctaaatatgg aggaaaaatg
     1621 tcagccatgt tccccccgcc ccccgagaat tatcagcaaa tgtgcagaaa gaaattcttc
     1681 gatgttatta ggtagacctt gacaataggg tcaactttca taaatatcag gtggcagaag
     1741 acattttgca agctacaaaa tgtgaaagaa acttttcttt gaaagaaact tttctttcag
     1801 aagtcacact ggtgccatat agaaataaca cagggcagaa atccagtaag taagtggatt
     1861 tccagaagtt tctctcatag catctagcat tacacatgca gagttcacag tgaggaactc
     1921 cggtgggtat caggcactca gaagtcttct tacaaggttg cactcatctt aaaaagatgg
     1981 aagggcattc atgcatagat tgcaaacaga taggagagcc ttatcaggaa cacgcccatc
     2041 gtgaaatgtt aattgcatga gtactttaat catccctatg tacgtatttt aaatatttga
     2101 accgccttca acaaaatgcc ctgaaggcag cggtcacact cttagtccca atgccagttc
     2161 caaggttgtt tttacttcct aaagaaacat acaatataaa cagaaaccaa ctaatatcac
     2221 atatatcaaa ggtagtaaaa gagcaaaaca caggggctgg agagatggct cagcagttaa
     2281 gagcactgac tgctcttcca gaggtcctga gttcaattcc cagtaaccac atggtggctc
     2341 acaaccatct gtaatgggat ctgatgctct tttctgatgt gtctgaagac agctacagtg
     2401 tactcatata catgaaataa atacataaat ctttttttaa aaaaagagca aaaaacaatc
     2461 agaaaacatc attaaacaaa taagtctttt aataagtagg atctaggggt gtgtgtgtgt
     2521 gtgtgtgtgt ttacctataa aaaaaaatct atctaaaaaa ctgtgtgtct tgctcttgga
     2581 gcccattgtg gttgttcctg agctcagtag ctgtgtaaga acacatgtca cattgtatca
     2641 acagtgactc ccaccggtgg cattgttcct gtaacatata ttggtgtata ctttaaatgc
     2701 acagtgtgtc tttttgtcca tctctgggca cttacaaatg ggttcagaca ttgttactaa
     2761 atggaccctt caaaagaaac actgtttttg taacgttttc ggctaaactg tgatgggctg
     2821 aacttcagct tggacatgca tttgagcggt cagagctgtt tctaaagcag cagtatttcc
     2881 ttattttatt gtagatgtag cagtggcatc tgtgtttgta ttgtgtatga aaaatacctc
     2941 atgactttcc cttcctattc tgggtagcag aggcaacatg accagtggct caaagtgaga
     3001 ttctaggctc ttactacctt tgttgaccca gatcccagca tggacatacc atgtaacttc
     3061 actgtgcctc accttcttcc tctgtaagag aaatgacagt aacatcctag aattgccctg
     3121 aggttgaaat acgttgccat tttgaagcac tcagaacagt gtctgtaaaa cataagaact
     3181 cgacattaga tagtattccc attaatttgt atttcccgaa tcacatggtg aaaaggttgg
     3241 caacccagaa tttatctccc atcttattcc tgttagtgcc ttgatttgat ttggctgtgt
     3301 atctccccac cgtggctcag gagcagaccc taagtaggca aggccagggg ttggtgaacc
     3361 gcagcccatc ggccagatcc acagcccgtt ttgtagcctg taagctgaaa ttagttttat
     3421 attactcaat gattgcaaaa attaagtatt ttgtgacaca tgaaggttgt acaaaacaaa
     3481 agttccatat atctaactga agcactttga gaacactaat acaaacccgt tcgctacatt
     3541 ctgcctttgc tgccttcgaa ctgtgctagc gaggcagacc taagatgttg ctgactcagc
     3601 actttaccgc atcggtttct gttactcagg gctgcacacg ctgcagccgg tcctgagccc
     3661 ttcttctaaa cgttctgttt accaaatgtg atgcctcagt gtatgggtgg gtaatttttg
     3721 tgcagtatat ttattttgtg cattgtattt atatgtggga aaagcctagg ctttgaagta
     3781 tttttttccc aaagaaatgt gggttttttt ttttacactt actgaattgt tacgttaaag
     3841 catatctcct gatggaatgt aataaatata tgaaataaac attgtctcaa ttaaatggaa
     3901 ttaaattttc aattaatctt t
//
